Dusp13 (dual specificity phosphatase 13) - Rat Genome Database

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Gene: Dusp13 (dual specificity phosphatase 13) Rattus norvegicus
Analyze
Symbol: Dusp13
Name: dual specificity phosphatase 13
RGD ID: 1359712
Description: Predicted to enable MAP kinase phosphatase activity and protein tyrosine/serine/threonine phosphatase activity. Predicted to be involved in dephosphorylation and negative regulation of MAPK cascade. Predicted to be active in cytoplasm. Orthologous to human DUSP13 (dual specificity phosphatase 13); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 2-amino-4,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: dual specificity protein phosphatase 13; LOC108348179; MGC94474; muscle-restricted dual specificity phosphatase; testis and skeletal muscle-specific dual specificity phosphatase
RGD Orthologs
Human
Mouse
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2152,559,720 - 2,575,105 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl152,533,547 - 2,575,539 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx152,566,457 - 2,581,840 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0153,952,903 - 3,968,286 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0152,565,257 - 2,580,640 (+)NCBIRnor_WKY
Rnor_6.0152,524,435 - 2,541,734 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl152,733,114 - 2,735,730 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl152,526,368 - 2,541,732 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl152,526,368 - 2,541,729 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl152,734,068 - 2,748,466 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0152,714,150 - 2,729,517 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4152,614,864 - 2,630,230 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1152,622,556 - 2,630,228 (+)NCBI
Celera152,008,057 - 2,023,408 (-)NCBICelera
Cytogenetic Map15p16NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IBA,ISO)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. Molecular cloning and characterization of a novel dual-specificity protein phosphatase possibly involved in spermatogenesis. Nakamura K, etal., Biochem J 1999 Dec 15;344 Pt 3:819-25.
4. GOA pipeline RGD automated data pipeline
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:11432789   PMID:15252030   PMID:24531476  


Genomics

Comparative Map Data
Dusp13
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2152,559,720 - 2,575,105 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl152,533,547 - 2,575,539 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx152,566,457 - 2,581,840 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0153,952,903 - 3,968,286 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0152,565,257 - 2,580,640 (+)NCBIRnor_WKY
Rnor_6.0152,524,435 - 2,541,734 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl152,733,114 - 2,735,730 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl152,526,368 - 2,541,732 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl152,526,368 - 2,541,729 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl152,734,068 - 2,748,466 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0152,714,150 - 2,729,517 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4152,614,864 - 2,630,230 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1152,622,556 - 2,630,228 (+)NCBI
Celera152,008,057 - 2,023,408 (-)NCBICelera
Cytogenetic Map15p16NCBI
DUSP13
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381075,094,434 - 75,109,191 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1075,094,432 - 75,109,221 (-)EnsemblGRCh38hg38GRCh38
GRCh371076,854,192 - 76,868,949 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361076,524,196 - 76,538,976 (-)NCBINCBI36Build 36hg18NCBI36
Build 341076,524,198 - 76,529,254NCBI
Celera1070,142,445 - 70,157,225 (-)NCBICelera
Cytogenetic Map10q22.2NCBI
HuRef1070,852,719 - 70,867,439 (-)NCBIHuRef
CHM1_11077,135,938 - 77,150,718 (-)NCBICHM1_1
T2T-CHM13v2.01075,967,932 - 75,982,690 (-)NCBIT2T-CHM13v2.0
Dusp13
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391421,783,460 - 21,798,704 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1421,783,462 - 21,801,249 (-)EnsemblGRCm39 Ensembl
GRCm381421,733,395 - 21,748,651 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1421,733,394 - 21,751,181 (-)EnsemblGRCm38mm10GRCm38
MGSCv371422,552,617 - 22,567,844 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361420,521,947 - 20,537,174 (-)NCBIMGSCv36mm8
Celera1418,116,274 - 18,131,815 (-)NCBICelera
Cytogenetic Map14A3NCBI
DUSP13
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11074,287,734 - 74,302,527 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1074,287,734 - 74,302,503 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01071,623,286 - 71,638,049 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
DUSP13
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1425,360,291 - 25,373,299 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl425,360,294 - 25,373,238 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha425,495,596 - 25,508,622 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0425,642,971 - 25,656,033 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl425,642,981 - 25,656,180 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1425,538,140 - 25,546,032 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0425,738,781 - 25,751,780 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0426,094,302 - 26,107,339 (-)NCBIUU_Cfam_GSD_1.0
Dusp13
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721355,739,914 - 55,743,734 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365214,232,565 - 4,245,323 (+)EnsemblSpeTri2.0
SpeTri2.0NW_0049365214,232,678 - 4,245,199 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DUSP13
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11477,660,124 - 77,677,713 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21483,790,369 - 83,804,190 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103215967
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1956,261,811 - 56,276,861 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl956,267,491 - 56,276,844 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604816,755,029 - 16,764,386 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dusp13
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247548,446,329 - 8,457,628 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247548,446,376 - 8,457,678 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Dusp13
55 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:196
Count of miRNA genes:104
Interacting mature miRNAs:109
Transcripts:ENSRNOT00000017663, ENSRNOT00000067781, ENSRNOT00000074545, ENSRNOT00000074803
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354657Despr13Despair related QTL 130.0022locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)15129912054Rat
8552920Pigfal8Plasma insulin-like growth factor 1 level QTL 83blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)15134723002Rat
8694361Abfw6Abdominal fat weight QTL 610.20.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)15134723002Rat
9589149Insul29Insulin level QTL 299.060.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)15134723002Rat
731170Pur3Proteinuria QTL 32.30.0005urine protein amount (VT:0005160)urine protein excretion rate (CMO:0000759)15141686771Rat
1641887Alcrsp14Alcohol response QTL 14response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)15142356671Rat
2298549Neuinf12Neuroinflammation QTL 123.5nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)15155302115Rat
10401805Kidm51Kidney mass QTL 51kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1530632945306329Rat
5684946Bss98Bone structure and strength QTL 983.90.0026tibia strength trait (VT:1000284)tibia ultimate force (CMO:0001734)15105825014481294Rat
1641913Colcr2Colorectal carcinoma resistance QTL 26.570.0197intestine integrity trait (VT:0010554)colorectal tumor number (CMO:0001794)15226636822711984Rat
1641913Colcr2Colorectal carcinoma resistance QTL 26.570.0197intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor number (CMO:0002076)15226636822711984Rat
738017Hcas7Hepatocarcinoma susceptibility QTL 72.91liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)15226636846921453Rat

Markers in Region
RH94133  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2152,574,665 - 2,574,820 (+)MAPPERmRatBN7.2
Rnor_6.0152,541,295 - 2,541,449NCBIRnor6.0
Rnor_6.0152,748,018 - 2,748,172NCBIRnor6.0
Rnor_5.0152,523,052 - 2,523,206UniSTSRnor5.0
Rnor_5.0152,729,076 - 2,729,230UniSTSRnor5.0
RGSC_v3.4152,629,791 - 2,629,945UniSTSRGSC3.4
Celera152,008,342 - 2,008,496UniSTS
Cytogenetic Map15p16UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

circulatory system endocrine system hemolymphoid system integumental system musculoskeletal system nervous system reproductive system respiratory system appendage
High
Medium 7
Low 8 11 1 8
Below cutoff 9 6 2 3 13 5

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001007006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001162408 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_003751425 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_003751426 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008770474 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008770475 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599729 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599730 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599731 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093422 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093423 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093424 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093425 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093426 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093427 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093428 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005493743 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005493744 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005493745 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC083646 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC166532 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474061 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000255 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000017663   ⟹   ENSRNOP00000017663
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl152,559,763 - 2,575,539 (+)Ensembl
Rnor_6.0 Ensembl152,734,068 - 2,748,466 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000048713   ⟹   ENSRNOP00000051508
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl152,559,737 - 2,575,100 (+)Ensembl
Rnor_6.0 Ensembl152,526,368 - 2,541,729 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000067781   ⟹   ENSRNOP00000058941
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl152,567,432 - 2,575,098 (+)Ensembl
Rnor_6.0 Ensembl152,740,784 - 2,748,450 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000074545   ⟹   ENSRNOP00000064546
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl152,733,114 - 2,735,730 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000074803   ⟹   ENSRNOP00000066962
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl152,533,547 - 2,575,539 (+)Ensembl
Rnor_6.0 Ensembl152,526,368 - 2,541,729 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000089013   ⟹   ENSRNOP00000075061
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl152,563,139 - 2,575,539 (+)Ensembl
Rnor_6.0 Ensembl152,527,343 - 2,541,732 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000101834   ⟹   ENSRNOP00000080776
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl152,563,139 - 2,575,539 (+)Ensembl
RefSeq Acc Id: NM_001007006   ⟹   NP_001007007
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2152,567,432 - 2,575,105 (+)NCBI
Rnor_6.0152,534,061 - 2,541,734 (+)NCBI
Rnor_5.0152,714,150 - 2,729,517 (+)NCBI
RGSC_v3.4152,614,864 - 2,630,230 (+)RGD
Celera152,008,057 - 2,015,722 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001162408   ⟹   NP_001155880
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2152,559,741 - 2,575,105 (+)NCBI
Rnor_6.0152,526,368 - 2,541,734 (+)NCBI
Rnor_5.0152,714,150 - 2,729,517 (+)NCBI
RGSC_v3.4152,614,864 - 2,630,230 (+)RGD
Celera152,008,057 - 2,023,408 (-)RGD
Sequence:
RefSeq Acc Id: XM_008770474   ⟹   XP_008768696
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2152,562,256 - 2,575,105 (+)NCBI
Rnor_6.0152,529,797 - 2,541,734 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008770475   ⟹   XP_008768697
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2152,562,256 - 2,575,105 (+)NCBI
Rnor_6.0152,529,797 - 2,541,734 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039093422   ⟹   XP_038949350
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2152,559,720 - 2,575,105 (+)NCBI
RefSeq Acc Id: XM_039093423   ⟹   XP_038949351
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2152,563,945 - 2,575,105 (+)NCBI
RefSeq Acc Id: XM_039093424   ⟹   XP_038949352
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2152,562,256 - 2,573,352 (+)NCBI
RefSeq Acc Id: XM_039093425   ⟹   XP_038949353
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2152,562,256 - 2,573,317 (+)NCBI
RefSeq Acc Id: XM_039093426   ⟹   XP_038949354
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2152,562,255 - 2,575,105 (+)NCBI
RefSeq Acc Id: XM_039093427   ⟹   XP_038949355
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2152,565,133 - 2,575,105 (+)NCBI
RefSeq Acc Id: XM_039093428   ⟹   XP_038949356
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2152,559,763 - 2,560,943 (+)NCBI
RefSeq Acc Id: XR_005493743
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2152,562,256 - 2,575,105 (+)NCBI
RefSeq Acc Id: XR_005493744
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2152,562,256 - 2,573,261 (+)NCBI
RefSeq Acc Id: XR_005493745
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2152,562,256 - 2,573,218 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_001007007   ⟸   NM_001007006
- Peptide Label: isoform 2
- UniProtKB: Q5XIN2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001155880   ⟸   NM_001162408
- Peptide Label: isoform 1
- UniProtKB: B2RYA2 (UniProtKB/TrEMBL),   D3ZRE9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008768696   ⟸   XM_008770474
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_008768697   ⟸   XM_008770475
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: ENSRNOP00000058941   ⟸   ENSRNOT00000067781
RefSeq Acc Id: ENSRNOP00000075061   ⟸   ENSRNOT00000089013
RefSeq Acc Id: ENSRNOP00000051508   ⟸   ENSRNOT00000048713
RefSeq Acc Id: ENSRNOP00000066962   ⟸   ENSRNOT00000074803
RefSeq Acc Id: ENSRNOP00000017663   ⟸   ENSRNOT00000017663
RefSeq Acc Id: XP_038949350   ⟸   XM_039093422
- Peptide Label: isoform X2
- UniProtKB: M0RBM2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038949356   ⟸   XM_039093428
- Peptide Label: isoform X9
RefSeq Acc Id: XP_038949354   ⟸   XM_039093426
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038949352   ⟸   XM_039093424
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038949353   ⟸   XM_039093425
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038949351   ⟸   XM_039093423
- Peptide Label: isoform X4
- UniProtKB: F7EXD6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038949355   ⟸   XM_039093427
- Peptide Label: isoform X8
- UniProtKB: Q5XIN2 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000064546   ⟸   ENSRNOT00000074545
RefSeq Acc Id: ENSRNOP00000080776   ⟸   ENSRNOT00000101834
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-M0R587-F1-model_v2 AlphaFold M0R587 1-188 view protein structure
AF-A0A0G2K9N1-F1-model_v2 AlphaFold A0A0G2K9N1 1-304 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1359712 AgrOrtholog
BioCyc Gene G2FUF-14599 BioCyc
Ensembl Genes ENSRNOG00000013112 Ensembl
  ENSRNOG00000048428 Ensembl
  ENSRNOG00000057795 Ensembl
  ENSRNOG00000060401 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000017663.5 UniProtKB/TrEMBL
  ENSRNOP00000051508 ENTREZGENE
  ENSRNOP00000051508.2 UniProtKB/TrEMBL
  ENSRNOP00000058941 ENTREZGENE
  ENSRNOP00000058941.2 UniProtKB/TrEMBL
  ENSRNOP00000066962 ENTREZGENE
  ENSRNOP00000066962.3 UniProtKB/TrEMBL
  ENSRNOP00000075061 ENTREZGENE
  ENSRNOP00000075061.2 UniProtKB/TrEMBL
  ENSRNOP00000080776.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000017663.7 UniProtKB/TrEMBL
  ENSRNOT00000048713 ENTREZGENE
  ENSRNOT00000048713.3 UniProtKB/TrEMBL
  ENSRNOT00000067781 ENTREZGENE
  ENSRNOT00000067781.2 UniProtKB/TrEMBL
  ENSRNOT00000074803 ENTREZGENE
  ENSRNOT00000074803.3 UniProtKB/TrEMBL
  ENSRNOT00000089013 ENTREZGENE
  ENSRNOT00000089013.2 UniProtKB/TrEMBL
  ENSRNOT00000101834.1 UniProtKB/TrEMBL
Gene3D-CATH 3.90.190.10 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7135038 IMAGE-MGC_LOAD
  IMAGE:7190084 IMAGE-MGC_LOAD
InterPro Dual-sp/Tyr_phosphatase UniProtKB/TrEMBL
  Dual-sp_phosphatase_cat-dom UniProtKB/TrEMBL
  Dual-sp_phosphatase_famA UniProtKB/TrEMBL
  Dual-sp_phosphatase_subgr_cat UniProtKB/TrEMBL
  Prot-tyrosine_phosphatase-like UniProtKB/TrEMBL
  Tyr_Pase_AS UniProtKB/TrEMBL
  Tyr_Pase_cat UniProtKB/TrEMBL
KEGG Report rno:361002 UniProtKB/TrEMBL
MGC_CLONE MGC:188125 IMAGE-MGC_LOAD
  MGC:94474 IMAGE-MGC_LOAD
NCBI Gene 361002 ENTREZGENE
PANTHER PTHR45682 UniProtKB/TrEMBL
Pfam DSPc UniProtKB/TrEMBL
PhenoGen Dusp13 PhenoGen
PRINTS ADSPHPHTASEA UniProtKB/TrEMBL
PROSITE TYR_PHOSPHATASE_1 UniProtKB/TrEMBL
  TYR_PHOSPHATASE_2 UniProtKB/TrEMBL
  TYR_PHOSPHATASE_DUAL UniProtKB/TrEMBL
SMART DSPc UniProtKB/TrEMBL
  PTPc_motif UniProtKB/TrEMBL
Superfamily-SCOP SSF52799 UniProtKB/TrEMBL
UniProt A0A0G2K9N1_RAT UniProtKB/TrEMBL
  A0A8I6G515_RAT UniProtKB/TrEMBL
  B2RYA2 ENTREZGENE, UniProtKB/TrEMBL
  D3ZRE9 ENTREZGENE, UniProtKB/TrEMBL
  F6Z8N5_RAT UniProtKB/TrEMBL
  F7EXD6 ENTREZGENE, UniProtKB/TrEMBL
  M0RBM2 ENTREZGENE, UniProtKB/TrEMBL
  Q5XIN2 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Dusp13  dual specificity phosphatase 13  LOC108348179  dual specificity protein phosphatase 13  Data Merged 737654 PROVISIONAL
2016-08-02 LOC108348179  dual specificity protein phosphatase 13      Symbol and Name status set to provisional 70820 PROVISIONAL
2005-07-29 Dusp13  dual specificity phosphatase 13      Symbol and Name status set to provisional 70820 PROVISIONAL