Lrrfip1 (LRR binding FLII interacting protein 1) - Rat Genome Database

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Gene: Lrrfip1 (LRR binding FLII interacting protein 1) Rattus norvegicus
Analyze
Symbol: Lrrfip1
Name: LRR binding FLII interacting protein 1
RGD ID: 1359548
Description: Predicted to enable DNA-binding transcription repressor activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and protein homodimerization activity. Predicted to be involved in negative regulation of transcription by RNA polymerase II. Predicted to act upstream of or within positive regulation of NF-kappaB transcription factor activity. Predicted to be located in cytosol and plasma membrane. Orthologous to human LRRFIP1 (LRR binding FLII interacting protein 1); INTERACTS WITH (+)-schisandrin B; 1-naphthyl isothiocyanate; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: leucine rich repeat (in FLII) interacting protein 1; leucine-rich repeat flightless-interacting protein 1; LOC367314; LRR FLII-interacting protein 1; similar to FLI-LRR associated protein-1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2991,592,032 - 91,720,250 (+)NCBI
Rnor_6.0 Ensembl998,190,829 - 98,257,735 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0998,139,484 - 98,268,148 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0997,820,647 - 97,950,350 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4990,278,891 - 90,346,980 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1990,483,659 - 90,551,748 (+)NCBI
Celera989,186,375 - 89,252,422 (+)NCBICelera
Cytogenetic Map9q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
(-)-demecolcine  (ISO)
(-)-epigallocatechin 3-gallate  (ISO)
(S)-nicotine  (ISO)
1,1-dichloroethene  (ISO)
1,2-dimethylhydrazine  (ISO)
1-naphthyl isothiocyanate  (EXP)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (EXP)
2,6-dinitrotoluene  (EXP)
3,3',4,4',5-pentachlorobiphenyl  (EXP)
3,4-methylenedioxymethamphetamine  (ISO)
4,4'-diaminodiphenylmethane  (EXP)
acetamide  (EXP)
acrolein  (ISO)
acrylamide  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
antirheumatic drug  (ISO)
aristolochic acid  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[e]pyrene  (ISO)
bisphenol A  (EXP,ISO)
bortezomib  (ISO)
cadmium dichloride  (EXP)
calcium dichloride  (ISO)
carbon nanotube  (ISO)
cocaine  (EXP)
copper(II) sulfate  (ISO)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
DDT  (EXP)
decabromodiphenyl ether  (EXP)
diarsenic trioxide  (ISO)
dibutyl phthalate  (EXP)
diuron  (EXP)
dorsomorphin  (ISO)
doxorubicin  (ISO)
elemental selenium  (ISO)
entinostat  (ISO)
enzyme inhibitor  (ISO)
ethanol  (ISO)
ethyl methanesulfonate  (ISO)
flutamide  (EXP)
folic acid  (ISO)
formaldehyde  (ISO)
lead(0)  (ISO)
lead(2+)  (ISO)
mercury atom  (ISO)
mercury(0)  (ISO)
methamphetamine  (ISO)
methapyrilene  (ISO)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
N-nitrosodimethylamine  (EXP)
nicotine  (ISO)
oxaliplatin  (EXP)
ozone  (ISO)
p-toluidine  (EXP)
panobinostat  (ISO)
paracetamol  (ISO)
phenylmercury acetate  (ISO)
potassium chromate  (ISO)
resveratrol  (ISO)
rimonabant  (ISO)
SB 431542  (ISO)
selenium atom  (ISO)
sodium arsenite  (EXP,ISO)
sodium dichromate  (EXP)
Soman  (EXP)
sunitinib  (ISO)
tamoxifen  (ISO)
tetrachloromethane  (EXP,ISO)
thioacetamide  (EXP)
topotecan  (EXP)
trichostatin A  (ISO)
tungsten  (ISO)
valdecoxib  (EXP)
valproic acid  (ISO)
vinclozolin  (EXP)
vincristine  (ISO)
vitamin E  (ISO)
vorinostat  (ISO)

References

Additional References at PubMed
PMID:10364563   PMID:14522076   PMID:15489334   PMID:19265123   PMID:23099021   PMID:23880186   PMID:24637094   PMID:25468996   PMID:25532521   PMID:28322931  


Genomics

Comparative Map Data
Lrrfip1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2991,592,032 - 91,720,250 (+)NCBI
Rnor_6.0 Ensembl998,190,829 - 98,257,735 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0998,139,484 - 98,268,148 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0997,820,647 - 97,950,350 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4990,278,891 - 90,346,980 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1990,483,659 - 90,551,748 (+)NCBI
Celera989,186,375 - 89,252,422 (+)NCBICelera
Cytogenetic Map9q36NCBI
LRRFIP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl2237,627,587 - 237,813,682 (+)EnsemblGRCh38hg38GRCh38
GRCh382237,627,576 - 237,781,643 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh372238,536,230 - 238,690,286 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362238,265,668 - 238,338,645 (+)NCBINCBI36hg18NCBI36
Build 342238,382,928 - 238,455,906NCBI
Celera2232,249,255 - 232,403,327 (+)NCBI
Cytogenetic Map2q37.3NCBI
HuRef2230,392,463 - 230,481,948 (+)NCBIHuRef
CHM1_12238,541,235 - 238,696,081 (+)NCBICHM1_1
Lrrfip1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39190,924,652 - 91,056,666 (+)NCBIGRCm39mm39
GRCm39 Ensembl190,926,459 - 91,056,666 (+)Ensembl
GRCm38190,996,930 - 91,128,944 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl190,998,737 - 91,128,944 (+)EnsemblGRCm38mm10GRCm38
MGSCv37192,895,304 - 93,025,521 (+)NCBIGRCm37mm9NCBIm37
MGSCv36192,883,913 - 92,959,324 (+)NCBImm8
Celera193,937,297 - 94,071,670 (+)NCBICelera
Cytogenetic Map1DNCBI
Lrrfip1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555422,632,933 - 2,686,865 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555422,632,933 - 2,737,922 (-)NCBIChiLan1.0ChiLan1.0
LRRFIP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12B243,775,371 - 243,863,899 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B243,775,371 - 243,863,116 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02B124,856,660 - 125,013,602 (+)NCBIMhudiblu_PPA_v0panPan3
LRRFIP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12548,292,968 - 48,370,727 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2548,292,720 - 48,370,469 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2548,728,723 - 48,867,611 (+)NCBI
ROS_Cfam_1.02548,616,990 - 48,756,690 (+)NCBI
UMICH_Zoey_3.12548,492,971 - 48,632,310 (+)NCBI
UNSW_CanFamBas_1.02548,281,181 - 48,420,794 (+)NCBI
UU_Cfam_GSD_1.02548,513,209 - 48,652,419 (+)NCBI
Lrrfip1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303190,276,636 - 190,346,654 (+)NCBI
SpeTri2.0NW_004936525593,048 - 663,066 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LRRFIP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15137,283,276 - 137,439,385 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115137,283,262 - 137,439,383 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215151,754,416 - 151,847,486 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LRRFIP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.110123,632,545 - 123,806,348 (+)NCBI
ChlSab1.1 Ensembl10123,707,283 - 123,809,140 (+)Ensembl
Vero_WHO_p1.0NW_02366604075,606,481 - 75,775,458 (-)NCBI
Lrrfip1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248472,993,251 - 3,095,611 (+)NCBI

Position Markers
BE107608  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2991,689,143 - 91,689,319 (+)MAPPER
Rnor_6.0998,237,038 - 98,237,213NCBIRnor6.0
Rnor_5.0997,919,240 - 97,919,415UniSTSRnor5.0
RGSC_v3.4990,326,282 - 90,326,457UniSTSRGSC3.4
Celera989,231,740 - 89,231,915UniSTS
RH 3.4 Map9784.59UniSTS
Cytogenetic Map9q36UniSTS
RH129755  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2991,709,581 - 91,709,761 (+)MAPPER
Rnor_6.0998,257,480 - 98,257,659NCBIRnor6.0
Rnor_5.0997,939,682 - 97,939,861UniSTSRnor5.0
RGSC_v3.4990,346,724 - 90,346,903UniSTSRGSC3.4
Celera989,252,166 - 89,252,345UniSTS
Cytogenetic Map9q36UniSTS
BE119589  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2991,680,127 - 91,680,280 (+)MAPPER
Rnor_6.0998,229,520 - 98,229,672NCBIRnor6.0
Rnor_6.0998,223,571 - 98,223,723NCBIRnor6.0
Rnor_5.0997,907,064 - 97,907,216UniSTSRnor5.0
Rnor_5.0997,911,722 - 97,911,874UniSTSRnor5.0
RGSC_v3.4990,317,329 - 90,317,481UniSTSRGSC3.4
Celera989,222,812 - 89,222,964UniSTS
Cytogenetic Map9q36UniSTS


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
724544Uae9Urinary albumin excretion QTL 94.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)929075079122095297Rat
731164Uae25Urinary albumin excretion QTL 253.50.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)929466970107878528Rat
8662828Vetf6Vascular elastic tissue fragility QTL 63.9artery integrity trait (VT:0010639)patent ductus arteriosus score (CMO:0002566)94126103498606834Rat
2290450Scl57Serum cholesterol level QTL 574.15blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)941261034102531865Rat
631656Bp108Blood pressure QTL 1085.970.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)95417754299177542Rat
1578760Cm53Cardiac mass QTL 533.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)961186278106186278Rat
724515Uae16Urinary albumin excretion QTL 168urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)963270073107878387Rat
1300134Bp185Blood pressure QTL 1853.73arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)966757444112943287Rat
1581580Uae34Urinary albumin excretion QTL 34urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)96745166499920892Rat
1578757Pur6Proteinuria QTL 63.30.005total urine protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)96745166499920892Rat
61385Edpm9Estrogen-dependent pituitary mass QTL 93.430.05pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)970241351115241351Rat
731171Glom6Glomerulus QTL 62.80.0003kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)970942881115942881Rat
1354626Bvd1Brain ventricular dilatation QTL 13.730.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)981411073119983851Rat
2303178Bp334Blood pressure QTL 3343.70.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)98368615398164303Rat
2303178Bp334Blood pressure QTL 3343.70.01arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)98368615398164303Rat
2303178Bp334Blood pressure QTL 3343.70.01arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)98368615398164303Rat
724547Cm21Cardiac mass QTL 212.7heart mass (VT:0007028)calculated heart weight (CMO:0000073)983686153111609081Rat
4889852Pur26Proteinuria QTL 26150.001total urine protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)990024661107199079Rat
7794784Mcs31Mammary carcinoma susceptibility QTL 312.98mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)990024661119983851Rat
4889943Bss90Bone structure and strength QTL 904.1tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)99274129798606834Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:147
Count of miRNA genes:104
Interacting mature miRNAs:128
Transcripts:ENSRNOT00000050191
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 42 30 19 30 8 10 54 35 33 11 8
Low 15 11 11 1 20 8
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001014269 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006245444 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006245445 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006245446 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006245447 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006245448 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006245450 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006245451 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006245452 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006245455 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006245456 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006245457 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006245458 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006245459 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006245460 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006245461 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006245462 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006245463 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006245464 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006245465 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006245466 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008767285 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008767286 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596575 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596576 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596577 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596578 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596579 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596580 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083982 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083983 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083984 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083986 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083987 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083988 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083989 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083990 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083992 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083993 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083994 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083995 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083996 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083997 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083998 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083999 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084000 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC081883 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473997 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213356 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000215 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000050191   ⟹   ENSRNOP00000045021
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl998,190,829 - 98,257,735 (+)Ensembl
RefSeq Acc Id: NM_001014269   ⟹   NP_001014291
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2991,643,291 - 91,709,838 (+)NCBI
Rnor_6.0998,190,829 - 98,257,736 (+)NCBI
Rnor_5.0997,820,647 - 97,950,350 (+)NCBI
RGSC_v3.4990,278,891 - 90,346,980 (+)RGD
Celera989,186,375 - 89,252,422 (+)RGD
Sequence:
RefSeq Acc Id: XM_006245444   ⟹   XP_006245506
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2991,592,032 - 91,709,841 (+)NCBI
Rnor_6.0998,139,484 - 98,257,739 (+)NCBI
Rnor_5.0997,820,647 - 97,950,350 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006245445   ⟹   XP_006245507
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2991,642,947 - 91,709,841 (+)NCBI
Rnor_6.0998,190,735 - 98,257,739 (+)NCBI
Rnor_5.0997,820,647 - 97,950,350 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006245446   ⟹   XP_006245508
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2991,592,032 - 91,709,841 (+)NCBI
Rnor_6.0998,139,484 - 98,257,739 (+)NCBI
Rnor_5.0997,820,647 - 97,950,350 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006245447   ⟹   XP_006245509
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2991,592,032 - 91,709,841 (+)NCBI
Rnor_6.0998,139,484 - 98,257,739 (+)NCBI
Rnor_5.0997,820,647 - 97,950,350 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006245448   ⟹   XP_006245510
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2991,592,032 - 91,709,841 (+)NCBI
Rnor_6.0998,139,484 - 98,257,739 (+)NCBI
Rnor_5.0997,820,647 - 97,950,350 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006245450   ⟹   XP_006245512
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2991,592,033 - 91,709,841 (+)NCBI
Rnor_6.0998,139,484 - 98,257,739 (+)NCBI
Rnor_5.0997,820,647 - 97,950,350 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006245451   ⟹   XP_006245513
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2991,592,033 - 91,709,841 (+)NCBI
Rnor_6.0998,139,484 - 98,257,739 (+)NCBI
Rnor_5.0997,820,647 - 97,950,350 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006245452   ⟹   XP_006245514
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2991,592,033 - 91,709,841 (+)NCBI
Rnor_6.0998,139,484 - 98,257,739 (+)NCBI
Rnor_5.0997,820,647 - 97,950,350 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006245455   ⟹   XP_006245517
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2991,592,034 - 91,709,841 (+)NCBI
Rnor_6.0998,139,484 - 98,257,739 (+)NCBI
Rnor_5.0997,820,647 - 97,950,350 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006245456   ⟹   XP_006245518
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2991,642,956 - 91,709,841 (+)NCBI
Rnor_6.0998,190,736 - 98,257,739 (+)NCBI
Rnor_5.0997,820,647 - 97,950,350 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006245457   ⟹   XP_006245519
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2991,642,958 - 91,709,841 (+)NCBI
Rnor_6.0998,190,736 - 98,257,739 (+)NCBI
Rnor_5.0997,820,647 - 97,950,350 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006245458   ⟹   XP_006245520
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2991,592,035 - 91,709,841 (+)NCBI
Rnor_6.0998,139,484 - 98,257,739 (+)NCBI
Rnor_5.0997,820,647 - 97,950,350 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006245459   ⟹   XP_006245521
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2991,592,032 - 91,720,250 (+)NCBI
Rnor_6.0998,139,484 - 98,268,148 (+)NCBI
Rnor_5.0997,820,647 - 97,950,350 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006245460   ⟹   XP_006245522
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2991,592,033 - 91,720,250 (+)NCBI
Rnor_6.0998,139,484 - 98,268,148 (+)NCBI
Rnor_5.0997,820,647 - 97,950,350 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006245461   ⟹   XP_006245523
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2991,642,950 - 91,720,250 (+)NCBI
Rnor_6.0998,190,736 - 98,268,148 (+)NCBI
Rnor_5.0997,820,647 - 97,950,350 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006245462   ⟹   XP_006245524
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2991,592,033 - 91,720,250 (+)NCBI
Rnor_6.0998,139,484 - 98,268,148 (+)NCBI
Rnor_5.0997,820,647 - 97,950,350 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006245463   ⟹   XP_006245525
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2991,592,034 - 91,720,250 (+)NCBI
Rnor_6.0998,139,484 - 98,268,148 (+)NCBI
Rnor_5.0997,820,647 - 97,950,350 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006245464   ⟹   XP_006245526
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2991,592,036 - 91,720,250 (+)NCBI
Rnor_6.0998,139,484 - 98,268,148 (+)NCBI
Rnor_5.0997,820,647 - 97,950,350 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006245465   ⟹   XP_006245527
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2991,592,037 - 91,720,250 (+)NCBI
Rnor_6.0998,139,485 - 98,268,148 (+)NCBI
Rnor_5.0997,820,647 - 97,950,350 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008767285   ⟹   XP_008765507
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2991,592,032 - 91,709,841 (+)NCBI
Rnor_6.0998,139,484 - 98,257,739 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008767286   ⟹   XP_008765508
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2991,592,033 - 91,709,841 (+)NCBI
Rnor_6.0998,139,484 - 98,257,739 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017596577   ⟹   XP_017452066
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2991,592,033 - 91,709,841 (+)NCBI
Rnor_6.0998,139,484 - 98,257,739 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017596578   ⟹   XP_017452067
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2991,592,033 - 91,709,841 (+)NCBI
Rnor_6.0998,139,484 - 98,257,739 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017596579   ⟹   XP_017452068
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2991,592,033 - 91,709,841 (+)NCBI
Rnor_6.0998,139,484 - 98,257,739 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017596580   ⟹   XP_017452069
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2991,592,033 - 91,709,841 (+)NCBI
Rnor_6.0998,139,484 - 98,257,739 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039083982   ⟹   XP_038939910
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2991,642,947 - 91,709,841 (+)NCBI
RefSeq Acc Id: XM_039083983   ⟹   XP_038939911
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2991,592,032 - 91,709,841 (+)NCBI
RefSeq Acc Id: XM_039083984   ⟹   XP_038939912
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2991,592,032 - 91,709,841 (+)NCBI
RefSeq Acc Id: XM_039083986   ⟹   XP_038939914
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2991,642,948 - 91,709,841 (+)NCBI
RefSeq Acc Id: XM_039083987   ⟹   XP_038939915
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2991,592,033 - 91,709,841 (+)NCBI
RefSeq Acc Id: XM_039083988   ⟹   XP_038939916
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2991,592,033 - 91,709,841 (+)NCBI
RefSeq Acc Id: XM_039083989   ⟹   XP_038939917
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2991,592,033 - 91,709,841 (+)NCBI
RefSeq Acc Id: XM_039083990   ⟹   XP_038939918
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2991,592,033 - 91,709,841 (+)NCBI
RefSeq Acc Id: XM_039083992   ⟹   XP_038939920
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2991,642,952 - 91,709,841 (+)NCBI
RefSeq Acc Id: XM_039083993   ⟹   XP_038939921
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2991,642,953 - 91,709,841 (+)NCBI
RefSeq Acc Id: XM_039083994   ⟹   XP_038939922
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2991,592,032 - 91,720,250 (+)NCBI
RefSeq Acc Id: XM_039083995   ⟹   XP_038939923
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2991,592,033 - 91,720,250 (+)NCBI
RefSeq Acc Id: XM_039083996   ⟹   XP_038939924
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2991,592,036 - 91,720,250 (+)NCBI
RefSeq Acc Id: XM_039083997   ⟹   XP_038939925
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2991,642,968 - 91,720,250 (+)NCBI
RefSeq Acc Id: XM_039083998   ⟹   XP_038939926
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2991,642,950 - 91,720,250 (+)NCBI
RefSeq Acc Id: XM_039083999   ⟹   XP_038939927
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2991,592,035 - 91,720,250 (+)NCBI
RefSeq Acc Id: XM_039084000   ⟹   XP_038939928
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2991,592,035 - 91,720,250 (+)NCBI
RefSeq Acc Id: XM_039084002   ⟹   XP_038939930
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2991,592,036 - 91,720,250 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001014291 (Get FASTA)   NCBI Sequence Viewer  
  XP_006245506 (Get FASTA)   NCBI Sequence Viewer  
  XP_006245507 (Get FASTA)   NCBI Sequence Viewer  
  XP_006245508 (Get FASTA)   NCBI Sequence Viewer  
  XP_006245509 (Get FASTA)   NCBI Sequence Viewer  
  XP_006245510 (Get FASTA)   NCBI Sequence Viewer  
  XP_006245512 (Get FASTA)   NCBI Sequence Viewer  
  XP_006245513 (Get FASTA)   NCBI Sequence Viewer  
  XP_006245514 (Get FASTA)   NCBI Sequence Viewer  
  XP_006245517 (Get FASTA)   NCBI Sequence Viewer  
  XP_006245518 (Get FASTA)   NCBI Sequence Viewer  
  XP_006245519 (Get FASTA)   NCBI Sequence Viewer  
  XP_006245520 (Get FASTA)   NCBI Sequence Viewer  
  XP_006245521 (Get FASTA)   NCBI Sequence Viewer  
  XP_006245522 (Get FASTA)   NCBI Sequence Viewer  
  XP_006245523 (Get FASTA)   NCBI Sequence Viewer  
  XP_006245524 (Get FASTA)   NCBI Sequence Viewer  
  XP_006245525 (Get FASTA)   NCBI Sequence Viewer  
  XP_006245526 (Get FASTA)   NCBI Sequence Viewer  
  XP_006245527 (Get FASTA)   NCBI Sequence Viewer  
  XP_008765507 (Get FASTA)   NCBI Sequence Viewer  
  XP_008765508 (Get FASTA)   NCBI Sequence Viewer  
  XP_017452066 (Get FASTA)   NCBI Sequence Viewer  
  XP_017452067 (Get FASTA)   NCBI Sequence Viewer  
  XP_017452068 (Get FASTA)   NCBI Sequence Viewer  
  XP_017452069 (Get FASTA)   NCBI Sequence Viewer  
  XP_038939910 (Get FASTA)   NCBI Sequence Viewer  
  XP_038939911 (Get FASTA)   NCBI Sequence Viewer  
  XP_038939912 (Get FASTA)   NCBI Sequence Viewer  
  XP_038939914 (Get FASTA)   NCBI Sequence Viewer  
  XP_038939915 (Get FASTA)   NCBI Sequence Viewer  
  XP_038939916 (Get FASTA)   NCBI Sequence Viewer  
  XP_038939917 (Get FASTA)   NCBI Sequence Viewer  
  XP_038939918 (Get FASTA)   NCBI Sequence Viewer  
  XP_038939920 (Get FASTA)   NCBI Sequence Viewer  
  XP_038939921 (Get FASTA)   NCBI Sequence Viewer  
  XP_038939922 (Get FASTA)   NCBI Sequence Viewer  
  XP_038939923 (Get FASTA)   NCBI Sequence Viewer  
  XP_038939924 (Get FASTA)   NCBI Sequence Viewer  
  XP_038939925 (Get FASTA)   NCBI Sequence Viewer  
  XP_038939926 (Get FASTA)   NCBI Sequence Viewer  
  XP_038939927 (Get FASTA)   NCBI Sequence Viewer  
  XP_038939928 (Get FASTA)   NCBI Sequence Viewer  
  XP_038939930 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH81883 (Get FASTA)   NCBI Sequence Viewer  
  EDL92040 (Get FASTA)   NCBI Sequence Viewer  
  EDL92041 (Get FASTA)   NCBI Sequence Viewer  
  EDL92042 (Get FASTA)   NCBI Sequence Viewer  
  EDL92043 (Get FASTA)   NCBI Sequence Viewer  
  EDL92044 (Get FASTA)   NCBI Sequence Viewer  
  EDL92045 (Get FASTA)   NCBI Sequence Viewer  
  EDL92046 (Get FASTA)   NCBI Sequence Viewer  
  EDL92047 (Get FASTA)   NCBI Sequence Viewer  
  EDL92048 (Get FASTA)   NCBI Sequence Viewer  
  EDL92049 (Get FASTA)   NCBI Sequence Viewer  
  EDL92050 (Get FASTA)   NCBI Sequence Viewer  
  Q66HF9 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001014291   ⟸   NM_001014269
- UniProtKB: Q66HF9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006245506   ⟸   XM_006245444
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006245510   ⟸   XM_006245448
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_006245512   ⟸   XM_006245450
- Peptide Label: isoform X9
- Sequence:
RefSeq Acc Id: XP_006245509   ⟸   XM_006245447
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_006245514   ⟸   XM_006245452
- Peptide Label: isoform X15
- Sequence:
RefSeq Acc Id: XP_006245508   ⟸   XM_006245446
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_006245521   ⟸   XM_006245459
- Peptide Label: isoform X29
- Sequence:
RefSeq Acc Id: XP_006245513   ⟸   XM_006245451
- Peptide Label: isoform X10
- Sequence:
RefSeq Acc Id: XP_006245524   ⟸   XM_006245462
- Peptide Label: isoform X34
- Sequence:
RefSeq Acc Id: XP_006245525   ⟸   XM_006245463
- Peptide Label: isoform X35
- Sequence:
RefSeq Acc Id: XP_006245522   ⟸   XM_006245460
- Peptide Label: isoform X30
- Sequence:
RefSeq Acc Id: XP_006245517   ⟸   XM_006245455
- Peptide Label: isoform X25
- Sequence:
RefSeq Acc Id: XP_006245520   ⟸   XM_006245458
- Peptide Label: isoform X28
- Sequence:
RefSeq Acc Id: XP_006245526   ⟸   XM_006245464
- Peptide Label: isoform X37
- Sequence:
RefSeq Acc Id: XP_006245527   ⟸   XM_006245465
- Peptide Label: isoform X43
- Sequence:
RefSeq Acc Id: XP_006245507   ⟸   XM_006245445
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006245523   ⟸   XM_006245461
- Peptide Label: isoform X31
- Sequence:
RefSeq Acc Id: XP_006245518   ⟸   XM_006245456
- Peptide Label: isoform X26
- Sequence:
RefSeq Acc Id: XP_006245519   ⟸   XM_006245457
- Peptide Label: isoform X27
- Sequence:
RefSeq Acc Id: XP_008765507   ⟸   XM_008767285
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_008765508   ⟸   XM_008767286
- Peptide Label: isoform X23
- Sequence:
RefSeq Acc Id: XP_017452067   ⟸   XM_017596578
- Peptide Label: isoform X14
- Sequence:
RefSeq Acc Id: XP_017452066   ⟸   XM_017596577
- Peptide Label: isoform X12
- Sequence:
RefSeq Acc Id: XP_017452069   ⟸   XM_017596580
- Peptide Label: isoform X17
- Sequence:
RefSeq Acc Id: XP_017452068   ⟸   XM_017596579
- Peptide Label: isoform X16
- Sequence:
RefSeq Acc Id: ENSRNOP00000045021   ⟸   ENSRNOT00000050191
RefSeq Acc Id: XP_038939922   ⟸   XM_039083994
- Peptide Label: isoform X32
RefSeq Acc Id: XP_038939911   ⟸   XM_039083983
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038939912   ⟸   XM_039083984
- Peptide Label: isoform X11
RefSeq Acc Id: XP_038939923   ⟸   XM_039083995
- Peptide Label: isoform X33
RefSeq Acc Id: XP_038939915   ⟸   XM_039083987
- Peptide Label: isoform X18
RefSeq Acc Id: XP_038939916   ⟸   XM_039083988
- Peptide Label: isoform X19
RefSeq Acc Id: XP_038939918   ⟸   XM_039083990
- Peptide Label: isoform X21
RefSeq Acc Id: XP_038939917   ⟸   XM_039083989
- Peptide Label: isoform X20
RefSeq Acc Id: XP_038939927   ⟸   XM_039083999
- Peptide Label: isoform X40
RefSeq Acc Id: XP_038939928   ⟸   XM_039084000
- Peptide Label: isoform X41
RefSeq Acc Id: XP_038939930   ⟸   XM_039084002
- Peptide Label: isoform X42
RefSeq Acc Id: XP_038939924   ⟸   XM_039083996
- Peptide Label: isoform X36
RefSeq Acc Id: XP_038939910   ⟸   XM_039083982
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038939914   ⟸   XM_039083986
- Peptide Label: isoform X13
RefSeq Acc Id: XP_038939926   ⟸   XM_039083998
- Peptide Label: isoform X39
RefSeq Acc Id: XP_038939920   ⟸   XM_039083992
- Peptide Label: isoform X22
RefSeq Acc Id: XP_038939921   ⟸   XM_039083993
- Peptide Label: isoform X24
RefSeq Acc Id: XP_038939925   ⟸   XM_039083997
- Peptide Label: isoform X38

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696853
Promoter ID:EPDNEW_R7378
Type:initiation region
Name:Lrrfip1_1
Description:LRR binding FLII interacting protein 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0998,190,837 - 98,190,897EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN/SsN (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Buf/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
F344/NCrl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
FHH/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
GH/OmrMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/Ox (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LE/Stm (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
M520/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MHS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
SBH/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHRSP/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1359548 AgrOrtholog
Ensembl Genes ENSRNOG00000019892 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein ENSRNOP00000045021 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000050191 ENTREZGENE, UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7108398 IMAGE-MGC_LOAD
InterPro LRRFIP1/2 UniProtKB/Swiss-Prot
KEGG Report rno:367314 UniProtKB/Swiss-Prot
MGC_CLONE MGC:93757 IMAGE-MGC_LOAD
NCBI Gene 367314 ENTREZGENE
PANTHER PTHR19212 UniProtKB/Swiss-Prot
Pfam LRRFIP UniProtKB/Swiss-Prot
PhenoGen Lrrfip1 PhenoGen
UniProt LRRF1_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-06-29 Lrrfip1  LRR binding FLII interacting protein 1  Lrrfip1  leucine rich repeat (in FLII) interacting protein 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-07-25 Lrrfip1  leucine rich repeat (in FLII) interacting protein 1  LOC367314  similar to FLI-LRR associated protein-1  Symbol and Name updated to reflect Human and Mouse nomenclature 1299863 APPROVED
2005-07-29 LOC367314  similar to FLI-LRR associated protein-1      Symbol and Name status set to provisional 70820 PROVISIONAL