Ube2j2 (ubiquitin-conjugating enzyme E2, J2) - Rat Genome Database

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Gene: Ube2j2 (ubiquitin-conjugating enzyme E2, J2) Rattus norvegicus
Analyze
Symbol: Ube2j2
Name: ubiquitin-conjugating enzyme E2, J2
RGD ID: 1359523
Description: Predicted to enable ubiquitin conjugating enzyme activity and ubiquitin protein ligase binding activity. Predicted to be involved in positive regulation of protein targeting to mitochondrion; protein K6-linked ubiquitination; and proteolysis involved in protein catabolic process. Predicted to be located in membrane. Predicted to be part of ubiquitin ligase complex. Predicted to be active in endoplasmic reticulum and nucleus. Orthologous to human UBE2J2 (ubiquitin conjugating enzyme E2 J2); PARTICIPATES IN Endoplasmic Reticulum-associated degradation pathway; Parkinson's disease pathway; ubiquitin/proteasome degradation pathway; INTERACTS WITH bis(2-ethylhexyl) phthalate; bisphenol A; fipronil.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: MGC94113; similar to Ubc6p homolog; ubiquitin-conjugating enzyme E2 J2; ubiquitin-conjugating enzyme E2, J2 (UBC6 homolog, yeast); ubiquitin-conjugating enzyme E2, J2 homolog; ubiquitin-conjugating enzyme E2, J2 homolog (yeast)
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85171,815,607 - 171,830,037 (+)NCBIGRCr8
mRatBN7.25166,533,374 - 166,547,811 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5166,533,418 - 166,547,804 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5169,238,138 - 169,252,559 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05171,059,561 - 171,073,983 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05171,022,094 - 171,036,517 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05173,372,659 - 173,387,084 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5173,372,669 - 173,387,104 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05176,848,287 - 176,862,703 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45172,782,311 - 172,796,727 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15172,792,805 - 172,807,219 (+)NCBI
Celera5164,734,099 - 164,748,533 (+)NCBICelera
Cytogenetic Map5q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
3. GOA pipeline RGD automated data pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:11278356   PMID:20061386   PMID:24019521   PMID:24270810   PMID:24807418  


Genomics

Comparative Map Data
Ube2j2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85171,815,607 - 171,830,037 (+)NCBIGRCr8
mRatBN7.25166,533,374 - 166,547,811 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5166,533,418 - 166,547,804 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5169,238,138 - 169,252,559 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05171,059,561 - 171,073,983 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05171,022,094 - 171,036,517 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05173,372,659 - 173,387,084 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5173,372,669 - 173,387,104 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05176,848,287 - 176,862,703 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45172,782,311 - 172,796,727 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15172,792,805 - 172,807,219 (+)NCBI
Celera5164,734,099 - 164,748,533 (+)NCBICelera
Cytogenetic Map5q36NCBI
UBE2J2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811,253,912 - 1,273,854 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11,253,909 - 1,273,864 (-)EnsemblGRCh38hg38GRCh38
GRCh3711,189,292 - 1,209,234 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3611,179,155 - 1,199,097 (-)NCBINCBI36Build 36hg18NCBI36
Build 3411,229,216 - 1,249,157NCBI
Celera11,373,022 - 1,393,007 (+)NCBICelera
Cytogenetic Map1p36.33NCBI
HuRef1461,268 - 480,938 (-)NCBIHuRef
CHM1_111,175,791 - 1,196,283 (-)NCBICHM1_1
T2T-CHM13v2.01682,910 - 702,871 (-)NCBIT2T-CHM13v2.0
Ube2j2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394156,028,270 - 156,044,061 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4156,028,288 - 156,044,061 (+)EnsemblGRCm39 Ensembl
GRCm384155,943,813 - 155,959,604 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4155,943,831 - 155,959,604 (+)EnsemblGRCm38mm10GRCm38
MGSCv374155,317,940 - 155,333,713 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364154,787,631 - 154,803,404 (+)NCBIMGSCv36mm8
Celera4158,206,511 - 158,222,564 (+)NCBICelera
Cytogenetic Map4E2NCBI
cM Map487.66NCBI
Ube2j2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554869,524,459 - 9,540,562 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554869,519,467 - 9,539,666 (+)NCBIChiLan1.0ChiLan1.0
UBE2J2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21226,953,111 - 226,973,160 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11225,649,883 - 225,669,945 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v018,756 - 28,672 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.111,211,502 - 1,231,813 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11,211,502 - 1,231,530 (-)Ensemblpanpan1.1panPan2
UBE2J2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1556,440,394 - 56,455,491 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl556,441,821 - 56,455,460 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha556,517,299 - 56,532,402 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0556,643,223 - 56,658,336 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl556,643,248 - 56,658,448 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1556,633,956 - 56,649,057 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0556,526,236 - 56,541,339 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0556,916,237 - 56,931,340 (-)NCBIUU_Cfam_GSD_1.0
Ube2j2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505827,590,730 - 27,607,014 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367371,862,578 - 1,875,248 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367371,862,577 - 1,875,216 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
UBE2J2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl663,555,488 - 63,568,017 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1663,556,134 - 63,568,080 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2657,970,220 - 57,982,129 (+)NCBISscrofa10.2Sscrofa10.2susScr3
UBE2J2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120130,174,207 - 130,192,723 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl20130,174,223 - 130,195,150 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605434,742,534 - 34,762,357 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ube2j2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248188,326,781 - 8,347,370 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248188,326,592 - 8,347,108 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ube2j2
41 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:63
Count of miRNA genes:51
Interacting mature miRNAs:59
Transcripts:ENSRNOT00000026752
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631272Lanf1Left ventricular atrial natriuretic factor QTL 112heart left ventricle natriuretic peptide A amount (VT:0010596)heart left ventricle natriuretic peptide A level (CMO:0002165)5151113452166875058Rat
10053720Scort26Serum corticosterone level QTL 262.060.0147blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)5124965598166875058Rat
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)52138965166875058Rat
631562Apr2Acute phase response QTL 23.7blood murinoglobulin 1 amount (VT:0010597)plasma murinoglobulin 1 level (CMO:0001931)5135927956166875058Rat
61444Strs2Sensitivity to stroke QTL 24.7cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)5135929696166875058Rat
634349Bp139Blood pressure QTL 1390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5128924607166875058Rat
724525Bp147Blood pressure QTL 1474.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5126424772166875058Rat
1549904Neuinf1Neuroinflammation QTL 130nervous system integrity trait (VT:0010566)blood T lymphocyte count (CMO:0000110)5154828214166875058Rat
738018Anxrr4Anxiety related response QTL 45.1exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)5130130159166875058Rat
8552908Pigfal4Plasma insulin-like growth factor 1 level QTL 46.6blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5128506074166875058Rat
7794791Mcs33Mammary carcinoma susceptibility QTL 331.93mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)5131345754166875058Rat
1302790Scl20Serum cholesterol level QTL 206.40.0001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)582394392166664054Rat
1598861Cm64Cardiac mass QTL 642.9heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)5127798274166875058Rat
1641920Colcs1Colorectal carcinoma susceptibility QTL 12.990.0055intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)5121846814166846814Rat
1598819Bp292Blood pressure QTL 2924.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5127798274166875058Rat
1331721Bp210Blood pressure QTL 2103.413arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)5143069996166846814Rat
8694169Bw148Body weight QTL 14850.001body mass (VT:0001259)body weight gain (CMO:0000420)5128506074166875058Rat

Markers in Region
AA819755  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25166,547,523 - 166,547,671 (+)MAPPERmRatBN7.2
Rnor_6.05173,386,797 - 173,386,944NCBIRnor6.0
Rnor_5.05176,862,416 - 176,862,563UniSTSRnor5.0
RGSC_v3.45172,796,440 - 172,796,587UniSTSRGSC3.4
Celera5164,748,246 - 164,748,393UniSTS
RH 3.4 Map51173.8UniSTS
Cytogenetic Map5q36UniSTS
D4Mon53  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25166,532,046 - 166,532,111 (+)MAPPERmRatBN7.2
Rnor_6.05173,371,323 - 173,371,387NCBIRnor6.0
Rnor_5.05176,846,941 - 176,847,005UniSTSRnor5.0
RGSC_v3.45172,780,965 - 172,781,029UniSTSRGSC3.4
Celera5164,732,763 - 164,732,827UniSTS
Cytogenetic Map5q36UniSTS
D4Mon54  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25166,532,405 - 166,532,576 (+)MAPPERmRatBN7.2
Rnor_6.05173,371,681 - 173,371,849NCBIRnor6.0
Rnor_5.05176,847,299 - 176,847,467UniSTSRnor5.0
RGSC_v3.45172,781,323 - 172,781,491UniSTSRGSC3.4
Celera5164,733,121 - 164,733,289UniSTS
Cytogenetic Map5q36UniSTS
D4Mon59  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25166,540,597 - 166,540,811 (+)MAPPERmRatBN7.2
Rnor_6.05173,379,871 - 173,380,084NCBIRnor6.0
Rnor_5.05176,855,489 - 176,855,702UniSTSRnor5.0
RGSC_v3.45172,789,513 - 172,789,726UniSTSRGSC3.4
Celera5164,741,320 - 164,741,533UniSTS
Cytogenetic Map5q36UniSTS
D4Mon60  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25166,542,507 - 166,542,729 (+)MAPPERmRatBN7.2
Rnor_6.05173,381,781 - 173,382,002NCBIRnor6.0
Rnor_5.05176,857,400 - 176,857,621UniSTSRnor5.0
RGSC_v3.45172,791,424 - 172,791,645UniSTSRGSC3.4
Celera5164,743,230 - 164,743,451UniSTS
Cytogenetic Map5q36UniSTS
AA819755  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25166,547,436 - 166,547,650 (+)MAPPERmRatBN7.2
Rnor_6.05173,386,710 - 173,386,923NCBIRnor6.0
Rnor_5.05176,862,329 - 176,862,542UniSTSRnor5.0
RGSC_v3.45172,796,353 - 172,796,566UniSTSRGSC3.4
Celera5164,748,159 - 164,748,372UniSTS
RH 3.4 Map51173.8UniSTS
Cytogenetic Map5q36UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000026752   ⟹   ENSRNOP00000026752
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5166,536,959 - 166,547,804 (+)Ensembl
Rnor_6.0 Ensembl5173,372,669 - 173,387,081 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000077602   ⟹   ENSRNOP00000074553
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5166,533,418 - 166,547,804 (+)Ensembl
Rnor_6.0 Ensembl5173,373,888 - 173,387,104 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000094080   ⟹   ENSRNOP00000082034
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5166,538,352 - 166,547,475 (+)Ensembl
RefSeq Acc Id: NM_001007655   ⟹   NP_001007656
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85171,815,612 - 171,830,037 (+)NCBI
mRatBN7.25166,533,386 - 166,547,811 (+)NCBI
Rnor_6.05173,372,659 - 173,387,084 (+)NCBI
Rnor_5.05176,848,287 - 176,862,703 (+)NCBI
RGSC_v3.45172,782,311 - 172,796,727 (+)RGD
Celera5164,734,099 - 164,748,533 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006239554   ⟹   XP_006239616
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85171,815,609 - 171,830,037 (+)NCBI
mRatBN7.25166,533,379 - 166,547,811 (+)NCBI
Rnor_6.05173,372,686 - 173,387,084 (+)NCBI
Rnor_5.05176,848,287 - 176,862,703 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006239555   ⟹   XP_006239617
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85171,815,609 - 171,830,037 (+)NCBI
mRatBN7.25166,533,379 - 166,547,811 (+)NCBI
Rnor_6.05173,372,705 - 173,387,084 (+)NCBI
Rnor_5.05176,848,287 - 176,862,703 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006239557   ⟹   XP_006239619
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85171,815,609 - 171,830,037 (+)NCBI
mRatBN7.25166,533,379 - 166,547,811 (+)NCBI
Rnor_6.05173,372,709 - 173,387,084 (+)NCBI
Rnor_5.05176,848,287 - 176,862,703 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006239558   ⟹   XP_006239620
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85171,815,608 - 171,830,037 (+)NCBI
mRatBN7.25166,533,379 - 166,547,811 (+)NCBI
Rnor_6.05173,372,722 - 173,387,084 (+)NCBI
Rnor_5.05176,848,287 - 176,862,703 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008764355   ⟹   XP_008762577
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85171,818,891 - 171,830,037 (+)NCBI
mRatBN7.25166,536,658 - 166,547,811 (+)NCBI
Rnor_6.05173,372,662 - 173,387,084 (+)NCBI
Sequence:
RefSeq Acc Id: XM_063287507   ⟹   XP_063143577
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85171,815,609 - 171,830,037 (+)NCBI
RefSeq Acc Id: XM_063287508   ⟹   XP_063143578
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85171,815,607 - 171,828,735 (+)NCBI
RefSeq Acc Id: NP_001007656   ⟸   NM_001007655
- UniProtKB: A0A0G2K8C5 (UniProtKB/TrEMBL),   A6IUU4 (UniProtKB/TrEMBL),   A0A8J8XLZ8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006239616   ⟸   XM_006239554
- Peptide Label: isoform X1
- UniProtKB: A0A0G2K8C5 (UniProtKB/TrEMBL),   A6IUU4 (UniProtKB/TrEMBL),   A0A8J8XLZ8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006239617   ⟸   XM_006239555
- Peptide Label: isoform X1
- UniProtKB: A0A0G2K8C5 (UniProtKB/TrEMBL),   A6IUU4 (UniProtKB/TrEMBL),   A0A8J8XLZ8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006239619   ⟸   XM_006239557
- Peptide Label: isoform X2
- UniProtKB: Q6AYB7 (UniProtKB/TrEMBL),   G3V8L8 (UniProtKB/TrEMBL),   A0A8J8XLZ8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006239620   ⟸   XM_006239558
- Peptide Label: isoform X2
- UniProtKB: Q6AYB7 (UniProtKB/TrEMBL),   G3V8L8 (UniProtKB/TrEMBL),   A0A8J8XLZ8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008762577   ⟸   XM_008764355
- Peptide Label: isoform X2
- UniProtKB: Q6AYB7 (UniProtKB/TrEMBL),   G3V8L8 (UniProtKB/TrEMBL),   A0A8J8XLZ8 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000026752   ⟸   ENSRNOT00000026752
Ensembl Acc Id: ENSRNOP00000074553   ⟸   ENSRNOT00000077602
Ensembl Acc Id: ENSRNOP00000082034   ⟸   ENSRNOT00000094080
RefSeq Acc Id: XP_063143578   ⟸   XM_063287508
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063143577   ⟸   XM_063287507
- Peptide Label: isoform X1
- UniProtKB: A0A8J8XLZ8 (UniProtKB/TrEMBL),   A0A0G2K8C5 (UniProtKB/TrEMBL),   A6IUU4 (UniProtKB/TrEMBL)
Protein Domains
UBC core

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2K8C5-F1-model_v2 AlphaFold A0A0G2K8C5 1-271 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694338
Promoter ID:EPDNEW_R4863
Type:initiation region
Name:Ube2j2_1
Description:ubiquitin-conjugating enzyme E2, J2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.05173,372,683 - 173,372,743EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1359523 AgrOrtholog
BioCyc Gene G2FUF-38884 BioCyc
BioCyc Pathway PWY-7511 [protein ubiquitination] BioCyc
BioCyc Pathway Image PWY-7511 BioCyc
Ensembl Genes ENSRNOG00000019749 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000026752.8 UniProtKB/TrEMBL
  ENSRNOT00000077602.2 UniProtKB/TrEMBL
  ENSRNOT00000094080.1 UniProtKB/TrEMBL
Gene3D-CATH 3.10.110.10 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7126201 IMAGE-MGC_LOAD
InterPro Ub_conjugating_enzyme UniProtKB/TrEMBL
  UBQ-conjugat_E2 UniProtKB/TrEMBL
  UBQ-conjugating_enzyme/RWD UniProtKB/TrEMBL
KEGG Report rno:298689 UniProtKB/TrEMBL
MGC_CLONE MGC:94113 IMAGE-MGC_LOAD
NCBI Gene 298689 ENTREZGENE
PANTHER UBC CORE DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
  UBIQUITIN-CONJUGATING ENZYME E2 UniProtKB/TrEMBL
Pfam UQ_con UniProtKB/TrEMBL
PhenoGen Ube2j2 PhenoGen
PROSITE UBIQUITIN_CONJUGAT_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000019749 RatGTEx
SMART UBCc UniProtKB/TrEMBL
Superfamily-SCOP UBQ-conjugat/RWD-like UniProtKB/TrEMBL
UniProt A0A0G2K8C5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6G6W9_RAT UniProtKB/TrEMBL
  A0A8J8XLZ8 ENTREZGENE, UniProtKB/TrEMBL
  A6IUU4 ENTREZGENE, UniProtKB/TrEMBL
  G3V8L8 ENTREZGENE
  Q6AYB7 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary G3V8L8 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-08-01 Ube2j2  ubiquitin-conjugating enzyme E2, J2  Ube2j2  ubiquitin-conjugating enzyme E2, J2 (UBC6 homolog, yeast)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-05-25 Ube2j2  ubiquitin-conjugating enzyme E2, J2 (UBC6 homolog, yeast)  Ube2j2  ubiquitin-conjugating enzyme E2, J2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-12-15 Ube2j2  ubiquitin-conjugating enzyme E2, J2  Ube2j2  ubiquitin-conjugating enzyme E2, J2 homolog (yeast)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-06 Ube2j2  ubiquitin-conjugating enzyme E2, J2 homolog (yeast)  MGC94113  similar to Ubc6p homolog  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-07-29 MGC94113  similar to Ubc6p homolog      Symbol and Name status set to provisional 70820 PROVISIONAL