Ndrg3 (NDRG family member 3) - Rat Genome Database

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Gene: Ndrg3 (NDRG family member 3) Rattus norvegicus
Analyze
Symbol: Ndrg3 (Ensembl: LOC679863)
Name: NDRG family member 3 (Ensembl:similar to N-myc downstream regulated gene 3)
RGD ID: 1359424
Description: Predicted to be involved in decidualization and signal transduction. Predicted to be active in cytoplasm. Orthologous to human NDRG3 (NDRG family member 3); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC296318; N-myc downstream regulated 3; N-myc downstream regulated gene 3; N-myc downstream regulated gene 3-like; N-myc downstream-regulated gene 3 protein; similar to Ndr3 protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83166,007,556 - 166,070,981 (-)NCBIGRCr8
mRatBN7.23145,587,505 - 145,650,896 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3145,548,041 - 145,650,873 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3149,412,925 - 149,476,219 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03157,911,426 - 157,974,699 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03155,651,319 - 155,714,472 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03152,972,055 - 153,099,089 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.03158,631,322 - 158,659,477 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43147,454,138 - 147,571,926 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13147,307,929 - 147,477,835 (-)NCBI
Celera3144,316,668 - 144,358,980 (-)NCBICelera
Cytogenetic Map3q42NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IBA,ISO)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:11936845   PMID:19056867   PMID:27812761   PMID:33247804  


Genomics

Comparative Map Data
Ndrg3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83166,007,556 - 166,070,981 (-)NCBIGRCr8
mRatBN7.23145,587,505 - 145,650,896 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3145,548,041 - 145,650,873 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3149,412,925 - 149,476,219 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03157,911,426 - 157,974,699 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03155,651,319 - 155,714,472 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03152,972,055 - 153,099,089 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.03158,631,322 - 158,659,477 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43147,454,138 - 147,571,926 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13147,307,929 - 147,477,835 (-)NCBI
Celera3144,316,668 - 144,358,980 (-)NCBICelera
Cytogenetic Map3q42NCBI
NDRG3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382036,651,771 - 36,746,090 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2036,651,766 - 36,746,090 (-)EnsemblGRCh38hg38GRCh38
GRCh372035,280,174 - 35,374,493 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362034,713,583 - 34,807,895 (-)NCBINCBI36Build 36hg18NCBI36
Build 342034,713,582 - 34,807,895NCBI
Celera2031,987,719 - 32,081,988 (-)NCBICelera
Cytogenetic Map20q11.23NCBI
HuRef2032,016,200 - 32,111,174 (-)NCBIHuRef
CHM1_12035,182,002 - 35,276,298 (-)NCBICHM1_1
T2T-CHM13v2.02038,376,108 - 38,470,363 (-)NCBIT2T-CHM13v2.0
Ndrg3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392156,769,262 - 156,834,052 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2156,769,265 - 156,833,976 (-)EnsemblGRCm39 Ensembl
GRCm382156,927,342 - 156,992,132 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2156,927,345 - 156,992,056 (-)EnsemblGRCm38mm10GRCm38
MGSCv372156,753,078 - 156,817,847 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362156,618,786 - 156,661,584 (-)NCBIMGSCv36mm8
Celera2162,863,371 - 162,927,900 (-)NCBICelera
Cytogenetic Map2H1NCBI
cM Map277.89NCBI
Ndrg3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542224,901,976 - 24,972,033 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542224,901,975 - 24,972,033 (+)NCBIChiLan1.0ChiLan1.0
NDRG3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22142,388,819 - 42,482,470 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12042,381,919 - 42,475,565 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02032,983,709 - 33,077,582 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12034,103,898 - 34,172,830 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2034,103,898 - 34,172,830 (-)Ensemblpanpan1.1panPan2
NDRG3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12425,429,987 - 25,504,639 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2425,431,312 - 25,486,468 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2425,075,377 - 25,150,144 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02426,127,266 - 26,202,078 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2426,127,286 - 26,201,826 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12425,405,666 - 25,480,249 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02425,504,885 - 25,580,017 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02425,995,357 - 26,069,862 (-)NCBIUU_Cfam_GSD_1.0
Ndrg3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640174,347,658 - 174,409,031 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365614,340,452 - 4,401,864 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365614,340,518 - 4,401,826 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NDRG3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1739,905,958 - 39,969,659 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11739,905,957 - 39,987,754 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21745,359,910 - 45,427,415 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NDRG3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Vero_WHO_p1.0NW_023666054615,209 - 660,526 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ndrg3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248422,786,992 - 2,849,901 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248422,767,359 - 2,848,637 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ndrg3
306 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:245
Count of miRNA genes:175
Interacting mature miRNAs:196
Transcripts:ENSRNOT00000000015, ENSRNOT00000055232
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)331172320163586636Rat
2301970Bw81Body weight QTL 815.19body mass (VT:0001259)body weight (CMO:0000012)341874578155617519Rat
2301971Cm71Cardiac mass QTL 714.63heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)341874578155617519Rat
1559282Emca5Estrogen-induced mammary cancer QTL 53.9mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)343827364169034231Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)347233211147415807Rat
1581568Rf53Renal function QTL 53urine total protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)356395968161299569Rat
8662816Vetf4Vascular elastic tissue fragility QTL 44renal artery integrity trait (VT:0010642)number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)359242096157323038Rat
1581546Pur13Proteinuria QTL 132.930.0335urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)378196190146592722Rat
631841Niddm39Non-insulin dependent diabetes mellitus QTL 393.36blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)394856903159898684Rat
2293087Iddm27Insulin dependent diabetes mellitus QTL 272.68blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)397551417147415807Rat
2312659Slep7Serum leptin concentration QTL 70.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)398535255168026850Rat
2312670Bw94Body weight QTL 940.01inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)398535255168026850Rat
2312673Scl63Serum cholesterol level QTL 630.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)398535255168026850Rat
2302373Gluco39Glucose level QTL 395.01blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)398535386161695835Rat
619618Rf3Renal disease susceptibility QTL 36.50.001urine albumin amount (VT:0002871)urine albumin excretion rate to body weight ratio (CMO:0001270)3107693393152693393Rat
1578754Stresp16Stress response QTL 1640.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)3112681431157681431Rat
1576306Schws3Schwannoma susceptibility QTL 30.001nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)3118839124163839124Rat
1598877Bp285Blood pressure QTL 2851.50.03arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3120538241165538241Rat
1300173Rf11Renal function QTL 113.38renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)3121056165145956249Rat
1300159Kidm4Kidney mass QTL 43.83kidney mass (VT:0002707)right kidney wet weight to body weight ratio (CMO:0001953)3121056165157309487Rat
10755461Coatc16Coat color QTL 16coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)3122438700167438700Rat
631541Bp81Blood pressure QTL 814arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3124122556169034231Rat
2303620Vencon4Ventilatory control QTL 43.9respiration trait (VT:0001943)tidal volume (CMO:0000222)3127162703168026850Rat
631673Iddm13Insulin dependent diabetes mellitus QTL 131.30.663blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)3130193298161695983Rat
1578656Vnigr2Vascular neointimal growth QTL 24.2artery morphology trait (VT:0002191)lesioned artery residual lumen area (CMO:0001417)3130656562169034231Rat
1578653Vnigr3Vascular neointimal growth QTL 33.1artery morphology trait (VT:0002191)artery neointimal hyperplastic lesion area (CMO:0001414)3130656562169034231Rat
9589106Insul23Insulin level QTL 2313.860.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)3131635904169034231Rat
2298477Eau4Experimental allergic uveoretinitis QTL 40.0011uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)3137398739169034231Rat
8552952Pigfal13Plasma insulin-like growth factor 1 level QTL 13blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)3138799500169034231Rat
5686842Rf59Renal function QTL 59urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)3140069424146976080Rat
1298068Bp167Blood pressure QTL 1670.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3141074471169034231Rat
1331726Bp208Blood pressure QTL 2083.129arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)3141339013162184794Rat
61335Bp20Blood pressure QTL 203arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3141339236155617360Rat
2317883Alcrsp26Alcohol response QTL 261.80.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)3145526770169034231Rat

Markers in Region
RH127348  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23145,548,184 - 145,548,400 (+)MAPPERmRatBN7.2
mRatBN7.23145,509,148 - 145,509,364 (+)MAPPERmRatBN7.2
mRatBN7.23145,431,188 - 145,431,404 (+)MAPPERmRatBN7.2
mRatBN7.23145,470,156 - 145,470,370 (+)MAPPERmRatBN7.2
mRatBN7.23145,587,657 - 145,587,873 (+)MAPPERmRatBN7.2
Rnor_6.03152,972,208 - 152,972,423NCBIRnor6.0
Rnor_5.03158,725,024 - 158,725,239UniSTSRnor5.0
RGSC_v3.43147,402,173 - 147,402,388UniSTSRGSC3.4
RGSC_v3.43147,454,243 - 147,454,458UniSTSRGSC3.4
RH 3.4 Map31329.0UniSTS
Cytogenetic Map3q42UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001013923 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104617 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104620 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104623 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283377 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283378 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283379 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283380 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283381 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283382 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283383 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283384 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283385 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010064592 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC078946 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000055232   ⟹   ENSRNOP00000052106
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3145,549,391 - 145,650,873 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000103585   ⟹   ENSRNOP00000087669
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3145,548,041 - 145,650,873 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000106731   ⟹   ENSRNOP00000089773
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3145,548,041 - 145,572,223 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000109829   ⟹   ENSRNOP00000086721
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3145,587,505 - 145,650,829 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000115244   ⟹   ENSRNOP00000093170
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3145,548,041 - 145,571,860 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000118753   ⟹   ENSRNOP00000083574
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3145,587,505 - 145,650,829 (-)Ensembl
RefSeq Acc Id: NM_001013923   ⟹   NP_001013945
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83166,007,556 - 166,070,911 (-)NCBI
mRatBN7.23145,587,505 - 145,650,873 (-)NCBI
Rnor_6.03152,972,055 - 153,099,089 (-)NCBI
RGSC_v3.43147,454,138 - 147,571,926 (-)RGD
Celera3144,316,668 - 144,358,980 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039104617   ⟹   XP_038960545
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83166,007,556 - 166,070,980 (-)NCBI
mRatBN7.23145,587,505 - 145,650,896 (-)NCBI
RefSeq Acc Id: XM_039104620   ⟹   XP_038960548
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83166,007,556 - 166,070,981 (-)NCBI
mRatBN7.23145,587,505 - 145,650,896 (-)NCBI
RefSeq Acc Id: XM_039104623   ⟹   XP_038960551
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83166,009,076 - 166,070,981 (-)NCBI
mRatBN7.23145,589,082 - 145,650,896 (-)NCBI
RefSeq Acc Id: XM_063283377   ⟹   XP_063139447
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83166,007,556 - 166,070,981 (-)NCBI
RefSeq Acc Id: XM_063283378   ⟹   XP_063139448
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83166,007,556 - 166,052,876 (-)NCBI
RefSeq Acc Id: XM_063283379   ⟹   XP_063139449
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83166,007,556 - 166,034,236 (-)NCBI
RefSeq Acc Id: XM_063283380   ⟹   XP_063139450
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83166,007,556 - 166,070,981 (-)NCBI
RefSeq Acc Id: XM_063283381   ⟹   XP_063139451
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83166,007,556 - 166,052,934 (-)NCBI
RefSeq Acc Id: XM_063283382   ⟹   XP_063139452
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83166,007,556 - 166,052,936 (-)NCBI
RefSeq Acc Id: XM_063283383   ⟹   XP_063139453
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83166,007,556 - 166,034,167 (-)NCBI
RefSeq Acc Id: XM_063283384   ⟹   XP_063139454
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83166,007,556 - 166,070,981 (-)NCBI
RefSeq Acc Id: XM_063283385   ⟹   XP_063139455
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83166,007,556 - 166,034,167 (-)NCBI
RefSeq Acc Id: XR_010064592
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83166,011,674 - 166,070,981 (-)NCBI
RefSeq Acc Id: NP_001013945   ⟸   NM_001013923
- UniProtKB: Q6AYR2 (UniProtKB/Swiss-Prot),   A0A8I6ASR6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_038960548   ⟸   XM_039104620
- Peptide Label: isoform X5
- UniProtKB: A0A8I6ASR6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038960545   ⟸   XM_039104617
- Peptide Label: isoform X4
- UniProtKB: D4ACZ5 (UniProtKB/TrEMBL),   A0A8I6ASR6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038960551   ⟸   XM_039104623
- Peptide Label: isoform X10
- UniProtKB: A0A8I6ASR6 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000093170   ⟸   ENSRNOT00000115244
RefSeq Acc Id: ENSRNOP00000052106   ⟸   ENSRNOT00000055232
RefSeq Acc Id: ENSRNOP00000089773   ⟸   ENSRNOT00000106731
RefSeq Acc Id: ENSRNOP00000087669   ⟸   ENSRNOT00000103585
RefSeq Acc Id: ENSRNOP00000083574   ⟸   ENSRNOT00000118753
RefSeq Acc Id: ENSRNOP00000086721   ⟸   ENSRNOT00000109829
RefSeq Acc Id: XP_063139454   ⟸   XM_063283384
- Peptide Label: isoform X8
- UniProtKB: A0A8I6ASR6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063139450   ⟸   XM_063283380
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063139447   ⟸   XM_063283377
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063139452   ⟸   XM_063283382
- Peptide Label: isoform X6
- UniProtKB: Q6AYR2 (UniProtKB/Swiss-Prot),   A0A8I6ASR6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063139451   ⟸   XM_063283381
- Peptide Label: isoform X4
- UniProtKB: A0A8I6ASR6 (UniProtKB/TrEMBL),   D4ACZ5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063139448   ⟸   XM_063283378
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063139449   ⟸   XM_063283379
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063139455   ⟸   XM_063283385
- Peptide Label: isoform X9
- UniProtKB: A0A8I6ASR6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063139453   ⟸   XM_063283383
- Peptide Label: isoform X7
- UniProtKB: A0A8I6ASR6 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4ACZ5-F1-model_v2 AlphaFold D4ACZ5 1-346 view protein structure
AF-Q6AYR2-F1-model_v2 AlphaFold Q6AYR2 1-375 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1359424 AgrOrtholog
BioCyc Gene G2FUF-47071 BioCyc
Ensembl Genes ENSRNOG00000036813 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOG00000064950 UniProtKB/TrEMBL
  ENSRNOG00000067832 UniProtKB/TrEMBL
  ENSRNOG00055028534 UniProtKB/Swiss-Prot
  ENSRNOG00060021238 UniProtKB/Swiss-Prot
  ENSRNOG00065026704 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000055232.4 UniProtKB/TrEMBL
  ENSRNOT00000097704.1 UniProtKB/TrEMBL
  ENSRNOT00000101329.1 UniProtKB/TrEMBL
  ENSRNOT00000103585.1 UniProtKB/Swiss-Prot
  ENSRNOT00000106731.1 UniProtKB/TrEMBL
  ENSRNOT00000109829 ENTREZGENE
  ENSRNOT00000109829.1 UniProtKB/Swiss-Prot
  ENSRNOT00000115244.1 UniProtKB/TrEMBL
  ENSRNOT00000118753.1 UniProtKB/TrEMBL
  ENSRNOT00055049438 UniProtKB/Swiss-Prot
  ENSRNOT00060036792 UniProtKB/Swiss-Prot
  ENSRNOT00065046119 UniProtKB/Swiss-Prot
Gene3D-CATH 3.40.50.1820 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7109582 IMAGE-MGC_LOAD
InterPro AB_hydrolase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NDRG UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:296318 UniProtKB/Swiss-Prot
MGC_CLONE MGC:93790 IMAGE-MGC_LOAD
NCBI Gene 296318 ENTREZGENE
PANTHER PTHR11034 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR11034:SF20 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Ndr UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Ndrg3 PhenoGen
RatGTEx ENSRNOG00000036813 RatGTEx
  ENSRNOG00000064950 RatGTEx
  ENSRNOG00000067832 RatGTEx
  ENSRNOG00055028534 RatGTEx
  ENSRNOG00060021238 RatGTEx
  ENSRNOG00065026704 RatGTEx
Superfamily-SCOP SSF53474 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8I6AJ76_RAT UniProtKB/TrEMBL
  A0A8I6ALQ5_RAT UniProtKB/TrEMBL
  A0A8I6ASR6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6GAX3_RAT UniProtKB/TrEMBL
  D4ACZ5 ENTREZGENE, UniProtKB/TrEMBL
  NDRG3_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-08-14 Ndrg3  NDRG family member 3  Ndrg3  N-myc downstream regulated gene 3  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-07-29 Ndrg3  N-myc downstream regulated gene 3  Ndrg3  NDRG family member 3  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-05-24 Ndrg3  NDRG family member 3  LOC100366265  N-myc downstream regulated gene 3-like  Data merged from RGD:2323994 1643240 APPROVED
2013-02-27 Ndrg3  NDRG family member 3  Ndrg3  N-myc downstream regulated gene 3  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2011-02-22 Ndrg3  N-myc downstream regulated gene 3  Ndrg3  N-myc downstream regulated 3  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2011-02-18 Ndrg3  N-myc downstream regulated 3  Ndrg3  N-myc downstream regulated gene 3  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-05-06 LOC100366265  N-myc downstream regulated gene 3-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-03-04 Ndrg3  N-myc downstream regulated gene 3  LOC296318  similar to Ndr3 protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-07-29 LOC296318  similar to Ndr3 protein      Symbol and Name status set to provisional 70820 PROVISIONAL