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Gene: Tmbim1 (transmembrane BAX inhibitor motif containing 1) Rattus norvegicus

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Symbol:

Tmbim1

Name:

transmembrane BAX inhibitor motif containing 1

RGD ID:

1359409

Description:

Predicted to enable calcium channel activity and death receptor binding activity. Predicted to be involved in several processes, including negative regulation of Fas signaling pathway; negative regulation of apoptotic process; and positive regulation of blood vessel remodeling. Predicted to be located in Golgi membrane; endosome membrane; and lysosomal membrane. Predicted to be active in Golgi apparatus; endoplasmic reticulum; and membrane. Orthologous to human TMBIM1 (transmembrane BAX inhibitor motif containing 1); INTERACTS WITH (+)-schisandrin B; 1-naphthyl isothiocyanate; 2,3,7,8-tetrachlorodibenzodioxine.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

MGC94053; similar to RECS1; transmembrane BAX inhibitor motif-containing protein 1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	83,320,972 - 83,338,469 (-)	NCBI		GRCr8
mRatBN7.2	9	75,871,835 - 75,889,366 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	75,871,835 - 75,889,069 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	9	84,317,374 - 84,334,544 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	89,446,295 - 89,463,469 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	87,832,511 - 87,849,679 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	81,569,289 - 81,586,469 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	81,569,289 - 81,586,553 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	9	81,335,836 - 81,353,016 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	9	73,614,825 - 73,632,005 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	9	73,761,807 - 73,770,449 (-)	NCBI
Celera	9	73,448,320 - 73,465,500 (-)	NCBI		Celera
Cytogenetic Map	9	q33	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

alacrima, achalasia, and impaired intellectual development syndrome (ISO)

cerebrotendinous xanthomatosis (ISO)

Experimental Liver Cirrhosis (ISO)

myofibrillar myopathy 1 (ISO)

Neurodevelopmental Disorders (ISO)

paroxysmal nonkinesigenic dyskinesia 1 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

(1->4)-beta-D-glucan (ISO)

1,1-dichloroethene (ISO)

1,2-dimethylhydrazine (ISO)

1-naphthyl isothiocyanate (EXP)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

4,4'-diaminodiphenylmethane (EXP)

4,4'-sulfonyldiphenol (ISO)

5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole (EXP)

6-propyl-2-thiouracil (EXP)

acetamide (EXP)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

all-trans-retinoic acid (ISO)

amiodarone (EXP)

amphetamine (EXP)

arsane (ISO)

arsenic atom (ISO)

arsenous acid (ISO)

benzbromarone (EXP)

benzo[a]pyrene (ISO)

beta-lapachone (ISO)

bisphenol A (EXP,ISO)

bisphenol AF (ISO)

Bisphenol B (ISO)

bisphenol F (ISO)

cadmium dichloride (ISO)

carbamazepine (ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

chlorpyrifos (ISO)

ciglitazone (ISO)

clofibrate (EXP)

clofibric acid (EXP)

cobalt dichloride (ISO)

copper atom (EXP)

copper(0) (EXP)

crocidolite asbestos (ISO)

cyclosporin A (ISO)

dexamethasone (ISO)

diarsenic trioxide (ISO)

Dibutyl phosphate (ISO)

dibutyl phthalate (ISO)

diquat (ISO)

diuron (EXP)

doxorubicin (ISO)

endosulfan (EXP)

ethyl methanesulfonate (ISO)

fenamidone (ISO)

formaldehyde (ISO)

furan (EXP)

inulin (ISO)

isoprenaline (ISO)

ivermectin (ISO)

L-ethionine (EXP)

leflunomide (ISO)

N-nitrosodiethylamine (EXP)

N-nitrosodimethylamine (EXP)

omeprazole (EXP)

orphenadrine (EXP)

oxaliplatin (EXP)

paracetamol (ISO)

perfluorooctane-1-sulfonic acid (ISO)

pirinixic acid (EXP,ISO)

resveratrol (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

sodium dichromate (EXP)

Soman (EXP)

sulforaphane (ISO)

temozolomide (ISO)

testosterone enanthate (ISO)

tetrachloromethane (EXP,ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

topotecan (EXP)

trichloroethene (EXP)

triphenyl phosphate (EXP,ISO)

triptonide (ISO)

valproic acid (ISO)

vitamin E (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

apoptotic signaling pathway (IBA)

calcium ion transmembrane transport (IEA)

negative regulation of catalytic activity (ISO,ISS)

negative regulation of extrinsic apoptotic signaling pathway via death domain receptors (IBA,IEA,ISO,ISS)

negative regulation of Fas signaling pathway (IEA,ISO,ISS)

negative regulation of neuron apoptotic process (IBA)

negative regulation of protein localization to plasma membrane (IEA,ISO,ISS)

positive regulation of blood vessel remodeling (ISO,ISS)

Cellular Component

endoplasmic reticulum (IBA)

endosome membrane (IEA,ISO)

Golgi apparatus (IBA,IEA,ISO,ISS)

Golgi membrane (IEA,ISO)

lysosomal membrane (IEA,ISO)

membrane (IBA,IEA)

Molecular Function

calcium channel activity (IBA)

death receptor binding (IEA,ISO,ISS)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
4.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:16607040	PMID:16636500	PMID:17897319	PMID:19056867	PMID:21107705	PMID:23376485	PMID:23533145

Genomics

Comparative Map Data

Tmbim1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	83,320,972 - 83,338,469 (-)	NCBI		GRCr8
mRatBN7.2	9	75,871,835 - 75,889,366 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	75,871,835 - 75,889,069 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	9	84,317,374 - 84,334,544 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	89,446,295 - 89,463,469 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	87,832,511 - 87,849,679 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	81,569,289 - 81,586,469 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	81,569,289 - 81,586,553 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	9	81,335,836 - 81,353,016 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	9	73,614,825 - 73,632,005 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	9	73,761,807 - 73,770,449 (-)	NCBI
Celera	9	73,448,320 - 73,465,500 (-)	NCBI		Celera
Cytogenetic Map	9	q33	NCBI

TMBIM1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	218,274,197 - 218,292,503 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	218,274,197 - 218,292,586 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	2	219,138,920 - 219,157,226 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	218,847,161 - 218,865,524 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	2	212,905,492 - 212,923,864 (-)	NCBI		Celera
Cytogenetic Map	2	q35	ENTREZGENE
HuRef	2	210,992,006 - 211,010,384 (-)	NCBI		HuRef
CHM1_1	2	219,145,398 - 219,163,764 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	2	218,759,890 - 218,778,207 (-)	NCBI		T2T-CHM13v2.0

Tmbim1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	74,327,406 - 74,343,495 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	74,327,406 - 74,344,781 (-)	Ensembl		GRCm39 Ensembl
GRCm38	1	74,288,247 - 74,304,336 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	74,288,247 - 74,305,622 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	1	74,334,821 - 74,350,910 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	1	74,221,461 - 74,237,367 (-)	NCBI		MGSCv36	mm8
Celera	1	74,849,600 - 74,865,677 (-)	NCBI		Celera
Cytogenetic Map	1	C3	NCBI
cM Map	1	38.53	NCBI

Tmbim1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955453	15,092,522 - 15,099,021 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955453	15,083,179 - 15,100,197 (+)	NCBI	ChiLan1.0	ChiLan1.0

TMBIM1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	13	120,906,392 - 120,924,762 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2B	120,921,356 - 120,939,734 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2B	105,533,578 - 105,551,969 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2B	224,131,476 - 224,149,669 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2B	224,131,478 - 224,143,170 (-)	Ensembl	panpan1.1		panPan2

TMBIM1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	37	24,952,145 - 24,983,477 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	37	24,952,902 - 24,958,137 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	37	25,772,307 - 25,789,205 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	37	24,968,200 - 24,985,133 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	37	24,968,204 - 24,985,119 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	37	24,873,526 - 24,890,468 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	37	24,807,781 - 24,824,727 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	37	24,827,421 - 24,844,375 (-)	NCBI		UU_Cfam_GSD_1.0

Tmbim1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	174,460,373 - 174,477,277 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936569	800,760 - 820,271 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936569	803,154 - 820,000 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TMBIM1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	15	120,348,735 - 120,365,007 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	15	120,348,740 - 120,365,055 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

TMBIM1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	10	104,155,823 - 104,174,135 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	10	104,155,185 - 104,163,793 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666040	95,227,649 - 95,245,993 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Tmbim1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624823	6,735,497 - 6,756,093 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624823	6,736,216 - 6,757,285 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Tmbim1
41 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	504
Count of miRNA genes:	252
Interacting mature miRNAs:	307
Transcripts:	ENSRNOT00000019848
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
7411571	Bw138	Body weight QTL 138	14.3	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	9	32535505	77535505	Rat
11353957	Bmd92	Bone mineral density QTL 92		0.01	tibia mineral mass (VT:1000283)	volumetric bone mineral density (CMO:0001553)	9	46114199	91114199	Rat
61385	Edpm9	Estrogen-dependent pituitary mass QTL 9	3.43	0.05	pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	9	63869687	108869687	Rat
70218	Cm28	Cardiac mass QTL 28	8.3	0.0001	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	9	25268044	79271759	Rat
724544	Uae9	Urinary albumin excretion QTL 9	4.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	9	25268044	114175309	Rat
1578760	Cm53	Cardiac mass QTL 53	3.3	0.0001	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	9	56771635	101771635	Rat
1581580	Uae34	Urinary albumin excretion QTL 34			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	9	62072275	96470995	Rat
12879506	Pur33	Proteinuria QTL 33			urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	9	44649921	89649921	Rat
1354626	Bvd1	Brain ventricular dilatation QTL 1	3.73	0.001	brain ventricle morphology trait (VT:0000822)	hydrocephalus severity score (CMO:0001881)	9	75712843	111552878	Rat
731164	Uae25	Urinary albumin excretion QTL 25	3.5	0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	9	25661188	100929786	Rat
10058949	Gmadr5	Adrenal mass QTL 5	2	0.014	adrenal gland mass (VT:0010420)	both adrenal glands wet weight to body weight ratio (CMO:0002411)	9	42791513	87976209	Rat
1578757	Pur6	Proteinuria QTL 6	3.3	0.005	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	9	62072275	96470995	Rat
631656	Bp108	Blood pressure QTL 108	5.97	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	48598251	93598251	Rat
2303170	Bp332	Blood pressure QTL 332	3.73	0.027	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	9	55847841	77026453	Rat
8662828	Vetf6	Vascular elastic tissue fragility QTL 6	3.9		artery integrity trait (VT:0010639)	patent ductus arteriosus score (CMO:0002566)	9	36962359	92058970	Rat
61352	Bp34	Blood pressure QTL 34	5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	42495343	79271511	Rat
724515	Uae16	Urinary albumin excretion QTL 16	8		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	9	58163035	100929646	Rat
731171	Glom6	Glomerulus QTL 6	2.8	0.0003	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)	9	64573531	109573531	Rat
1598834	Memor11	Memory QTL 11	2.5		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	9	36962359	77814038	Rat
70186	Niddm26	Non-insulin dependent diabetes mellitus QTL 26	3.87		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	9	22071169	86369743	Rat
7207814	Bmd91	Bone mineral density QTL 91	3.5		femur size trait (VT:1000369)	femoral neck cross-sectional area (CMO:0001697)	9	23754144	83851531	Rat
6903941	Pur31	Proteinuria QTL 31		0.036	urine total protein amount (VT:0000032)	urine protein excretion rate (CMO:0000759)	9	40194188	85194188	Rat
2303180	Bp333	Blood pressure QTL 333		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	56627713	78595166	Rat
2290450	Scl57	Serum cholesterol level QTL 57	4.15		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	9	36962359	95410867	Rat
11353949	Bp393	Blood pressure QTL 393			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	40194188	85194188	Rat
11353951	Bp394	Blood pressure QTL 394			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	44649921	89649921	Rat
10054125	Srcrt7	Stress Responsive Cort QTL 7	3.33	0.0011	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	9	1	87073594	Rat
1300134	Bp185	Blood pressure QTL 185	3.73		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	9	61381434	104821652	Rat
7411656	Foco26	Food consumption QTL 26	9.8	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	9	32535505	77535505	Rat

Markers in Region

RH130780

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	75,871,995 - 75,872,213 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	81,569,450 - 81,569,667	NCBI	Rnor6.0
Rnor_5.0	9	81,335,997 - 81,336,214	UniSTS	Rnor5.0
RGSC_v3.4	9	73,614,986 - 73,615,203	UniSTS	RGSC3.4
Celera	9	73,448,481 - 73,448,698	UniSTS
RH 3.4 Map	9	708.89	UniSTS
Cytogenetic Map	9	q33	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001007713	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008767238	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008767239	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017596476	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017596477	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017596478	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017596479	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083668	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083669	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083670	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC079087	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000019848 ⟹ ENSRNOP00000019848

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	9	75,871,835 - 75,889,069 (-)	Ensembl
Rnor_6.0 Ensembl	9	81,569,289 - 81,586,469 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000077336

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	9	81,576,139 - 81,586,553 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000084610

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	9	81,574,173 - 81,575,900 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000086146

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	9	81,577,320 - 81,579,875 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000089952 ⟹ ENSRNOP00000073792

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	9	75,871,840 - 75,889,060 (-)	Ensembl
Rnor_6.0 Ensembl	9	81,575,197 - 81,586,116 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000089985 ⟹ ENSRNOP00000072508

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	9	75,871,852 - 75,889,060 (-)	Ensembl
Rnor_6.0 Ensembl	9	81,574,174 - 81,579,772 (-)	Ensembl

RefSeq Acc Id:

NM_001007713 ⟹ NP_001007714

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	83,320,972 - 83,338,152 (-)	NCBI
mRatBN7.2	9	75,871,835 - 75,889,016 (-)	NCBI
Rnor_6.0	9	81,569,289 - 81,586,469 (-)	NCBI
Rnor_5.0	9	81,335,836 - 81,353,016 (-)	NCBI
RGSC_v3.4	9	73,614,825 - 73,632,005 (-)	RGD
Celera	9	73,448,320 - 73,465,500 (-)	RGD

Sequence:

show sequence

GTCCGGAACAGCGCAGGTCCCAGAAGCTAGGGTTTCCCCTCAGCCCTTGAGTGGCCATGTCCAA
TCCCACTGCCCCACCTCCCTATGAGGACCACAACCCCCTGTACCCTGGCCGTCCACCTCCTGGG
GGCTACGGACAGCCGTCTGTCCTGCCTGGTGGTTACCCTGCCTACCCCGCCTACCCTCAACCTG
GTTACGGGCACCCTGCTGGCTACCCACAGCCGATTCCTCCTGTCCATCCAATGCCCATGAACTA
CGGCCATGACTATAGTGAGGAGGAGAGAGCAGGAAGTGACAGCTTTGGTCCTGGAGAATGGGAT
GACCGGAAAGTCCGACATACCTTCATCCAAAAGGTGTACTGCATCATTTCTGTCCAGCTGCTCA
TCACTGTGGCCATCATTGCTGTCTTCACCTTTGTGGAACCAGTCAGTGAATATGTGAGGAGCAA
TGTGGCGGTGTACTACGTGTCCTATGCTGTCTTCATTGTCACCTACCTGATCCTTGTCTGCTGC
CAGGGACCCAGACGCCGATTCCCATGGAACATTATCCTGCTAACCATCTTTACTTTGGCTTTGG
GCTTTATGACAGGCGCTATTTCCAGTATGTATGAAACCAAAGCTGTCATCATTGCTATGATCAT
CACTGCCGTGGTATCCATTTCTGTCACCATCTTCTGCTTTCAGACTAAGGTGGACTTCACCTCA
TGTACAGGCCTCATCTGTGTGCTGGGAATAGTGTTGGCAGTAACCGGTGCTGTCACAAGCGTAG
TGCTGTTTTTTGAATATATTTACTGGCTCCACATGGTCTACGCAGGTCTGGGGGCCATCTGTTT
CACCCTGTTCCTGGCTTATGACACGCAGCTGGTCCTGGGGAACCGGAAGCATACCATCAGCCCA
GAGGACTACATCACAGGCGCCCTGCAGATCTACACAGATATAGTCTACATCTTCACCTTTGTGC
TCCAGCTTGTAGGAAATCGAGACTGAGACAGAGAGGGAGAGAGATGTCCCTTTCACTGGCCTGG
GACTCACATTGTCTCCCCTCAAGTAATCTGCTCAGTTTCCTCTCCGTCCTGGGGATGGGAGGGT
CTCTGGCTGTGTTCTGTGAGAGCCATGAGTGCTGGGGTTACTGGCACCTCTTGCCCTTGGTGGG
CTTGATAAGAACTAGATTGAAGGTGTTTCTCCTTCCCTTCACCCACAATGAGTATGCACCAAAC
TTTTCATGTGTGTGTGTGTGTGGAGGGGGAGTAGGGAGCCGGTGAACACAGGAGCTCTGAGGTG
AAGAGGGTCCTCTCCCACCTCGGCCACAGGGTTCTAGGCTAGGAGCTGGAGCTGTTTCCCTCCT
GGATCCAATAAAGCCAGATGCTTCACCTCTAGCTCCAGTGCTCATAGGCCACTTATGCTGTCTG
AACTCTTTAGGCTTGGCATCTCTTAGCTTTAGAAGCTAGAAGAGATCTGTGCCCTGGGGTCTCT
CTGTTCCAACCCCATCTTCCAGTAACACGTATCCATTATTTATCTGGGCTAGGGGAAAAGACAG
TGAGCAAAGACAGTATGGGGGGAGAGTAGCACAGAATGGTGTCCCCCTGACTGGCACCCATCTT
GGCTACCATCCAGGTCCAAAGTGCTTGAGGCCTTCTGAGGCTTTTAAAATCTGACCTAGAGGGA
CCTCCTACTTTGCTTTGACACACAGAGGTGGAGGTCAGCAAGTAAGGTGGATTGTGGGATGAGT
GGGGACAGGGAAAGTGCCTTGGGTGCCCCTCTGGTTTGAGAAACTGAAACGTACTCTGGTATGT
AGCAACCTTCCTCCCCAACACAAGTTCAATCTGTTCTGTGTTCCTACTGGGAGATTTTAGACTA
AAACCCCTCTTCAAGCCAGCTGCTGTTTCTCTGTAATCCAAGTGCCTCCAACTGGCACCATGGT
GGGGATAGAAGCCAGTTTATCAGGTGGAGTAGAAACCTTATTAGCCCAAGGACATAGTTCAGAG
CTATTCTGTCCAGTACTTGATTCTGAATCTAATACAAAGGGACGCAACTAGAAATATAATAAAG
TTCTATGTTTGGCAAGAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_017596477 ⟹ XP_017451966

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	83,320,974 - 83,334,921 (-)	NCBI
mRatBN7.2	9	75,871,841 - 75,885,801 (-)	NCBI
Rnor_6.0	9	81,569,289 - 81,582,650 (-)	NCBI

Sequence:

show sequence

CTCAGAGATCTGTCTGCCTTTGAGTGCTGGGATTAAAGGAGTACGCACCACCACCTGGCCTTCT
TTCTTTATAAGCATACCAAGGCCACCCTAACTGGTGATGTGCCTGGGATCTTACAACCCCACAG
TACAATTCTGTCCTCAAAGATAAGGGTGATGGAGACGCTGCTGGATTGGGCCTTCCCATATTCT
CTAGGGCTTGGCTTTCTGCTTCTGTGGATCCAGAGTTAAGGACTCTTGAGGTAGGAGCTGAGGA
GTGGCCTGGACTCTGGAGTAATGGGGTTGGCAGGATAAGCAAGAAATAATGAGGGAACTGGAGA
GGGTGCTGTATTCTGGTAACTGTGGCTCTTTTGCTGAGCTTTCAGGTACTGGGCCAGGCTGGGA
AGGAAATTTCTAAATTCCTTAACACATACCCCTCCCCCAAGATAGCATCTCACTACCATCTCCT
GGCTGGCCTGGAACTTGCTATGTAGAACACGCTGGCCTTGAACTCACAGAGGTCCCCCTGCCTC
TGCTAGAATTAGAGGCATGAAGTACCAAATTCTTGGCCAACAGGGCCTGTCCTGGGCTGGAACT
CTTGGGTTTCCTGATTGTAGCTGACATCAGTGTTTGCATCCCTCTACTTCACATCTGATCCTGA
GGCCATAAGAGTACGGTGTGGATTCTGGGTTCCTGGGTGCTTCCTTCACTTCTCTGCCCAGTGG
CTATGTGCTGGGATGGGAGGTGTTTTCTTAGGGTGAATGGAGGGAAGAGGCTAGACATGGAGAC
CTGGTTATGGGGTGGGGCTTCCTGAGATGCACGCTGAGCAATTCTTTCCATTCTGGTCTGGGCA
TCAGTTTCTGGCATTCAGGTAGGCAAAGCTGCCTGGACTGCTCTTTTCTGTCCTTCCCTCCAGA
CACACCCTCTTGCTTGTAACCCCAGTAGCTCAGTCTTCTAGCTACAGATTCCAGACATTTTATA
TGCCACAGGAGAGCTGGAGCCAGAGTCTAACCTCCTCAGCAAGCCAGGTACAGAGCCGGTCCCT
GAGACAACCAGGATGTAGTAGGGAACAGCCTCCCCAGATTCTACACTGAAAACCTTGGCCACCC
ACAAATCCTGCTGTCTGGGCCTAGTACACACTGCTGCCGCCACTGTGACTGAGTCAGGGAGAGC
CTTGGGTTTTCTCTGATGTGTATGGATTACCTGAGAAAAAAGTACAAGTCTAGGCATGGAACTA
CGAGGATGGGGCAGTCTGGACACTGATCACAAGCTGGTGTTTGCTCAGAGACACTGGATGCCTT
CTCAACTTAGGAAAATGCTCAGTTCTTTGTGGTCCCTGGAGCCTGTGAAGCCCTCACAGCCTTG
GGTGCAGAAGACCCGACTCCGCCTTATCTGTACTCTGTCTCCAGGTCTCTTTTCTGCCCTTGTC
CCTCTTCCTACTTCTTTCCTTCTCTAGTCCCCATGCCTCAGGCTGGCTAAAGAATGACTGACCA
CTTCCTTTAGGGCAATGCTAGCCCCAGACCTCAGCCCTAGTGGAAGGCTTGGTGGAAGGGTCCT
CATGGAGGCCATGCAGGAGCTGGGGCCTGCTTAAAAGCCACATTGGGGGCTCTGGGTTCCAGAG
GTTCTTGTTGGTCTGACAGGTATTGTCCATGCTGTGGCTTAGTGGTGAGTGAGGCAGAGGCTGG
CAACTTTCTGGCTGGTACAAAACAAGAGTTTTACTCTCTTGCACCCAGGGTCAGACAGCCAGGA
TTGTGTTGTAGCCTAGGATCAACTTGTCTCAAGTGGGTGGGTGTCTCTGACATTTTGAGTCTCC
GTGTGCTGATGGATGGGATCGGAGTGCACTGTGGAGGGCTGAATTGTTAGGGATCCAATTCTGT
GTAATCCTGCTATTACCACTGGAGGATCTGAGCCAAAGCCATGGGAAATGGCTGAGAAATCGGA
AACAGATAGACTATCCAAATAAGGACTCAAAAAGGACATCAGAGTCAGCCTGGGGGTAAGCCTT
GACTTCGTTATACCCTGGTGAGGTATCCCTGGCCAACTTTCTTCACTTCCCTAAATCTCGGTGT
CTCTGTAATAGCAATGTTCCCCTGCTGGCATGCTCTACGGAGGTAGTGAAGTCACAACTGAAAA
CAGAGTATCCCTGGCTAGGCTGGGCACTGTTCTAAGAGCTCAGGCCTCTCTTTCCTTTTCTTTT
TAAATTAATTTATTTTTATTTTATGTGCATTGGTGTTCTGCCTGCCTGTATGTCTGTGTGAGGG
TGCCAGATCTCCTGGTGTAACTGGTATTACATACAGTTGTAAGCTGCCATGTGAATGCTGGGAC
TTGAACCCAGGTCCTCTGGAAGAGCATCCAGTGCTCTTAGCTGCTGAGCCATCTCTCCAGCCCG
CTGTGTATATTCTCCCTTAATTTTTACGGTTCCTTGGGAGGCACTGTTAACTGGTGTTGAACGT
CTTCCAGGTGAGGACCCTGGTTCAAAAGGGCAGGTGGTGGAGGACTCAGAGAACTATGCTGGGA
TCAGGCAGGTTCACTGGCAAATTCCTCTGACTACCAGCATGACTGGGCAGGGACAGGGAGTACT
GGAGGGAGGCCCATGAGTCAGCAGCTGAGCTACCCTAGACCCTGGAGCCCCATCCCAGGTAGTG
AGTCACTGTGGCCTCTCACTTGGGAAGAGGGAGGGGCCCCTGCATGCTGAACAAAAGGCAGAGG
CCCTGCGTGGTCAGTTTCCCAGGGTCACAGTCAGCTGTTAGAGCCATCATTGAGCCCTGAGATC
ACTCAACTACCCCATTTCACACAAACCTTGTGAGAGTGAAGGGCCAGGTCATTGTGACATCATG
GCTTGGGACTCTGACAACAGGGCTTTTCCTGGCAGTGCCTTTTAGGACTGTTTAACCATCAGCC
TGCACCACCATCCCAATGGAGGATGTCAGATAGATCTAGATTACTGAAATAAGGGCTATAATGA
AATGACAGGCACCTCTATACCAAAGACTCAGGACTCTCCAAACCAGTTCCAGTGGCTGATCTTA
GACTCTCCACTCCGAGTGTCATTTACCCTGCTGCTTTGCCCCCTCCTCCCCCAGTGCCTGACTC
CCATGCTTCCCTGCCCGGCTCACTTCTCACACCCTTACTGTCTAGAAGGGCTTTCTTTTCTCTG
GGGAGATGAAGAACAGCTTTCCTCAGTGTGACCTTCTCAGAGACCTGGCCTGTTACTCGATCTT
GACTGATTTCCCTCTGAATAAATCCTGTTGAGAGGAGATGTGAACGTCCTCTATTTGATCTCTG
AGCTGCACTGGGTGCCCTGGAAAGAGAAGCTGGGACTCTCCTCCTTCCAGCAGCAGCTCTGAAG
GTCCCAGAAGCTAGGGTTTCCCCTCAGCCCTTGAGTGGCCATGTCCAATCCCACTGCCCCACCT
CCCTATGAGGACCACAACCCCCTGTACCCTGGCCGTCCACCTCCTGGGGGCTACGGACAGCCGT
CTGTCCTGCCTGGTGGTTACCCTGCCTACCCCGCCTACCCTCAACCTGGTTACGGGCACCCTGC
TGGCTACCCACAGCCGATTCCTCCTGTCCATCCAATGCCCATGAACTACGGCCATGACTATAGT
GAGGAGGAGAGAGCAGGAAGTGACAGCTTTGGTCCTGGAGAATGGGATGACCGGAAAGTCCGAC
ATACCTTCATCCAAAAGGTGTACTGCATCATTTCTGTCCAGCTGCTCATCACTGTGGCCATCAT
TGCTGTCTTCACCTTTGTGGAACCAGTCAGTGAATATGTGAGGAGCAATGTGGCGGTGTACTAC
GTGTCCTATGCTGTCTTCATTGTCACCTACCTGATCCTTGTCTGCTGCCAGGGACCCAGACGCC
GATTCCCATGGAACATTATCCTGCTAACCATCTTTACTTTGGCTTTGGGCTTTATGACAGGCGC
TATTTCCAGTATGTATGAAACCAAAGCTGTCATCATTGCTATGATCATCACTGCCGTGGTATCC
ATTTCTGTCACCATCTTCTGCTTTCAGACTAAGGTGGACTTCACCTCATGTACAGGCCTCATCT
GTGTGCTGGGAATAGTGTTGGCAGTAACCGGTGCTGTCACAAGCGTAGTGCTGTTTTTTGAATA
TATTTACTGGCTCCACATGGTCTACGCAGGTCTGGGGGCCATCTGTTTCACCCTGTTCCTGGCT
TATGACACGCAGCTGGTCCTGGGGAACCGGAAGCATACCATCAGCCCAGAGGACTACATCACAG
GCGCCCTGCAGATCTACACAGATATAGTCTACATCTTCACCTTTGTGCTCCAGCTTGTAGGAAA
TCGAGACTGAGACAGAGAGGGAGAGAGATGTCCCTTTCACTGGCCTGGGACTCACATTGTCTCC
CCTCAAGTAATCTGCTCAGTTTCCTCTCCGTCCTGGGGATGGGAGGGTCTCTGGCTGTGTTCTG
TGAGAGCCATGAGTGCTGGGGTTACTGGCACCTCTTGCCCTTGGTGGGCTTGATAAGAACTAGA
TTGAAGGTGTTTCTCCTTCCCTTCACCCACAATGAGTATGCACCAAACTTTTCATGTGTGTGTG
TGTGTGGAGGGGGAGTAGGGAGCCGGTGAACACAGGAGCTCTGAGGTGAAGAGGGTCCTCTCCC
ACCTCGGCCACAGGGTTCTAGGCTAGGAGCTGGAGCTGTTTCCCTCCTGGATCCAATAAAGCCA
GATGCTTCACCTCTAGCTCCAGTGCTCATAGGCCACTTATGCTGTCTGAACTCTTTAGGCTTGG
CATCTCTTAGCTTTAGAAGCTAGAAGAGATCTGTGCCCTGGGGTCTCTCTGTTCCAACCCCATC
TTCCAGTAACACGTATCCATTATTTATCTGGGCTAGGGGAAAAGACAGTGAGCAAAGACAGTAT
GGGGGGAGAGTAGCACAGAATGGTGTCCCCCTGACTGGCACCCATCTTGGCTACCATCCAGGTC
CAAAGTGCTTGAGGCCTTCTGAGGCTTTTAAAATCTGACCTAGAGGGACCTCCTACTTTGCTTT
GACACACAGAGGTGGAGGTCAGCAAGTAAGGTGGATTGTGGGATGAGTGGGGACAGGGAAAGTG
CCTTGGGTGCCCCTCTGGTTTGAGAAACTGAAACGTACTCTGGTATGTAGCAACCTTCCTCCCC
AACACAAGTTCAATCTGTTCTGTGTTCCTACTGGGAGATTTTAGACTAAAACCCCTCTTCAAGC
CAGCTGCTGTTTCTCTGTAATCCAAGTGCCTCCAACTGGCACCATGGTGGGGATAGAAGCCAGT
TTATCAGGTGGAGTAGAAACCTTATTAGCCCAAGGACATAGTTCAGAGCTATTCTGTCCAGTAC
TTGATTCTGAATCTAATACAAAGGGACGCAACTAGAAATATAATAAAGTTCTATGTTTGGCAAG
AAGA

hide sequence

RefSeq Acc Id:

XM_017596478 ⟹ XP_017451967

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	83,320,974 - 83,334,920 (-)	NCBI
mRatBN7.2	9	75,871,841 - 75,885,799 (-)	NCBI
Rnor_6.0	9	81,569,289 - 81,582,650 (-)	NCBI

Sequence:

show sequence

CTCAGAGATCTGTCTGCCTTTGAGTGCTGGGATTAAAGGAGTACGCACCACCACCTGGCCTTCT
TTCTTTATAAGCATACCAAGGCCACCCTAACTGGTGATGTGCCTGGGATCTTACAACCCCACAG
TACAATTCTGTCCTCAAAGATAAGGGTGATGGAGACGCTGCTGGATTGGGCCTTCCCATATTCT
CTAGGGCTTGGCTTTCTGCTTCTGTGGATCCAGAGTTAAGGACTCTTGAGGTAGGAGCTGAGGA
GTGGCCTGGACTCTGGAGTAATGGGGTTGGCAGGATAAGCAAGAAATAATGAGGGAACTGGAGA
GGGTGCTGTATTCTGGTAACTGTGGCTCTTTTGCTGAGCTTTCAGGTACTGGGCCAGGCTGGGA
AGGAAATTTCTAAATTCCTTAACACATACCCCTCCCCCAAGATAGCATCTCACTACCATCTCCT
GGCTGGCCTGGAACTTGCTATGTAGAACACGCTGGCCTTGAACTCACAGAGGTCCCCCTGCCTC
TGCTAGAATTAGAGGCATGAAGTACCAAATTCTTGGCCAACAGGGCCTGTCCTGGGCTGGAACT
CTTGGGTTTCCTGATTGTAGCTGACATCAGTGTTTGCATCCCTCTACTTCACATCTGATCCTGA
GGCCATAAGAGTACGGTGTGGATTCTGGGTTCCTGGGTGCTTCCTTCACTTCTCTGCCCAGTGG
CTATGTGCTGGGATGGGAGGTGTTTTCTTAGGGTGAATGGAGGGAAGAGGCTAGACATGGAGAC
CTGGTTATGGGGTGGGGCTTCCTGAGATGCACGCTGAGCAATTCTTTCCATTCTGGTCTGGGCA
TCAGTTTCTGGCATTCAGGTAGGCAAAGCTGCCTGGACTGCTCTTTTCTGTCCTTCCCTCCAGA
CACACCCTCTTGCTTGTAACCCCAGTAGCTCAGTCTTCTAGCTACAGATTCCAGACATTTTATA
TGCCACAGGAGAGCTGGAGCCAGAGTCTAACCTCCTCAGCAAGCCAGGTACAGAGCCGGTCCCT
GAGACAACCAGGATGTAGTAGGGAACAGCCTCCCCAGATTCTACACTGAAAACCTTGGCCACCC
ACAAATCCTGCTGTCTGGGCCTAGTACACACTGCTGCCGCCACTGTGACTGAGTCAGGGAGAGC
CTTGGGTTTTCTCTGATGTGTATGGATTACCTGAGAAAAAAGTACAAGTCTAGGCATGGAACTA
CGAGGATGGGGCAGTCTGGACACTGATCACAAGCTGGTGTTTGCTCAGAGACACTGGATGCCTT
CTCAACTTAGGAAAATGCTCAGTTCTTTGTGGTCCCTGGAGCCTGTGAAGCCCTCACAGCCTTG
GGTGCAGAAGACCCGACTCCGCCTTATCTGTACTCTGTCTCCAGGTCTCTTTTCTGCCCTTGTC
CCTCTTCCTACTTCTTTCCTTCTCTAGTCCCCATGCCTCAGGCTGGCTAAAGAATGACTGACCA
CTTCCTTTAGGGCAATGCTAGCCCCAGACCTCAGCCCTAGTGGAAGGCTTGGTGGAAGGGTCCT
CATGGAGGCCATGCAGGAGCTGGGGCCTGCTTAAAAGCCACATTGGGGGCTCTGGGTTCCAGAG
GTTCTTGTTGGTCTGACAGGTATTGTCCATGCTGTGGCTTAGTGGTGAGTGAGGCAGAGGCTGG
CAACTTTCTGGCTGGTACAAAACAAGAGTTTTACTCTCTTGCACCCAGGGTCAGACAGCCAGGA
TTGTGTTGTAGCCTAGGATCAACTTGTCTCAAGTGGGTGGGTGTCTCTGACATTTTGAGTCTCC
GTGTGCTGATGGATGGGATCGGAGTGCACTGTGGAGGGCTGAATTGTTAGGGATCCAATTCTGT
GTAATCCTGCTATTACCACTGGAGGATCTGAGCCAAAGCCATGGGAAATGGCTGAGAAATCGGA
AACAGATAGACTATCCAAATAAGGACTCAAAAAGGACATCAGAGTCAGCCTGGGGGTAAGCCTT
GACTTCGTTATACCCTGGTGAGGTATCCCTGGCCAACTTTCTTCACTTCCCTAAATCTCGGTGT
CTCTGTAATAGCAATGTTCCCCTGCTGGCATGCTCTACGGAGGTAGTGAAGTCACAACTGAAAA
CAGAGTATCCCTGGCTAGGCTGGGCACTGTTCTAAGAGCTCAGGCCTCTCTTTCCTTTTCTTTT
TAAATTAATTTATTTTTATTTTATGTGCATTGGTGTTCTGCCTGCCTGTATGTCTGTGTGAGGG
TGCCAGATCTCCTGGTGTAACTGGTATTACATACAGTTGTAAGCTGCCATGTGAATGCTGGGAC
TTGAACCCAGGTCCTCTGGAAGAGCATCCAGTGCTCTTAGCTGCTGAGCCATCTCTCCAGCCCG
CTGTGTATATTCTCCCTTAATTTTTACGGTTCCTTGGGAGGCACTGTTAACTGGTGTTGAACGT
CTTCCAGGTGAGGACCCTGGTTCAAAAGGGCAGGTGGTGGAGGACTCAGAGAACTATGCTGGGA
TCAGGCAGGTTCACTGGCAAATTCCTCTGACTACCAGCATGACTGGGCAGGGACAGGGAGTACT
GGAGGGAGGCCCATGAGTCAGCAGCTGAGCTACCCTAGACCCTGGAGCCCCATCCCAGGTAGTG
AGTCACTGTGGCCTCTCACTTGGGAAGAGGGAGGGGCCCCTGCATGCTGAACAAAAGGCAGAGG
CCCTGCGTGGTCAGTTTCCCAGGGTCACAGTCAGCTGTTAGAGCCATCATTGAGCCCTGAGATC
ACTCAACTACCCCATTTCACACAAACCTTGTGAGAGTGAAGGGCCAGGTCATTGTGACATCATG
GCTTGGGACTCTGACAACAGGGCTTTTCCTGGCAGTGCCTTTTAGGACTGTTTAACCATCAGCC
TGCACCACCATCCCAATGGAGGATGTCAGATAGATCTAGATTACTGAAATAAGGGCTATAATGA
AATGACAGGCACCTCTATACCAAAGGTCCCAGAAGCTAGGGTTTCCCCTCAGCCCTTGAGTGGC
CATGTCCAATCCCACTGCCCCACCTCCCTATGAGGACCACAACCCCCTGTACCCTGGCCGTCCA
CCTCCTGGGGGCTACGGACAGCCGTCTGTCCTGCCTGGTGGTTACCCTGCCTACCCCGCCTACC
CTCAACCTGGTTACGGGCACCCTGCTGGCTACCCACAGCCGATTCCTCCTGTCCATCCAATGCC
CATGAACTACGGCCATGACTATAGTGAGGAGGAGAGAGCAGGAAGTGACAGCTTTGGTCCTGGA
GAATGGGATGACCGGAAAGTCCGACATACCTTCATCCAAAAGGTGTACTGCATCATTTCTGTCC
AGCTGCTCATCACTGTGGCCATCATTGCTGTCTTCACCTTTGTGGAACCAGTCAGTGAATATGT
GAGGAGCAATGTGGCGGTGTACTACGTGTCCTATGCTGTCTTCATTGTCACCTACCTGATCCTT
GTCTGCTGCCAGGGACCCAGACGCCGATTCCCATGGAACATTATCCTGCTAACCATCTTTACTT
TGGCTTTGGGCTTTATGACAGGCGCTATTTCCAGTATGTATGAAACCAAAGCTGTCATCATTGC
TATGATCATCACTGCCGTGGTATCCATTTCTGTCACCATCTTCTGCTTTCAGACTAAGGTGGAC
TTCACCTCATGTACAGGCCTCATCTGTGTGCTGGGAATAGTGTTGGCAGTAACCGGTGCTGTCA
CAAGCGTAGTGCTGTTTTTTGAATATATTTACTGGCTCCACATGGTCTACGCAGGTCTGGGGGC
CATCTGTTTCACCCTGTTCCTGGCTTATGACACGCAGCTGGTCCTGGGGAACCGGAAGCATACC
ATCAGCCCAGAGGACTACATCACAGGCGCCCTGCAGATCTACACAGATATAGTCTACATCTTCA
CCTTTGTGCTCCAGCTTGTAGGAAATCGAGACTGAGACAGAGAGGGAGAGAGATGTCCCTTTCA
CTGGCCTGGGACTCACATTGTCTCCCCTCAAGTAATCTGCTCAGTTTCCTCTCCGTCCTGGGGA
TGGGAGGGTCTCTGGCTGTGTTCTGTGAGAGCCATGAGTGCTGGGGTTACTGGCACCTCTTGCC
CTTGGTGGGCTTGATAAGAACTAGATTGAAGGTGTTTCTCCTTCCCTTCACCCACAATGAGTAT
GCACCAAACTTTTCATGTGTGTGTGTGTGTGGAGGGGGAGTAGGGAGCCGGTGAACACAGGAGC
TCTGAGGTGAAGAGGGTCCTCTCCCACCTCGGCCACAGGGTTCTAGGCTAGGAGCTGGAGCTGT
TTCCCTCCTGGATCCAATAAAGCCAGATGCTTCACCTCTAGCTCCAGTGCTCATAGGCCACTTA
TGCTGTCTGAACTCTTTAGGCTTGGCATCTCTTAGCTTTAGAAGCTAGAAGAGATCTGTGCCCT
GGGGTCTCTCTGTTCCAACCCCATCTTCCAGTAACACGTATCCATTATTTATCTGGGCTAGGGG
AAAAGACAGTGAGCAAAGACAGTATGGGGGGAGAGTAGCACAGAATGGTGTCCCCCTGACTGGC
ACCCATCTTGGCTACCATCCAGGTCCAAAGTGCTTGAGGCCTTCTGAGGCTTTTAAAATCTGAC
CTAGAGGGACCTCCTACTTTGCTTTGACACACAGAGGTGGAGGTCAGCAAGTAAGGTGGATTGT
GGGATGAGTGGGGACAGGGAAAGTGCCTTGGGTGCCCCTCTGGTTTGAGAAACTGAAACGTACT
CTGGTATGTAGCAACCTTCCTCCCCAACACAAGTTCAATCTGTTCTGTGTTCCTACTGGGAGAT
TTTAGACTAAAACCCCTCTTCAAGCCAGCTGCTGTTTCTCTGTAATCCAAGTGCCTCCAACTGG
CACCATGGTGGGGATAGAAGCCAGTTTATCAGGTGGAGTAGAAACCTTATTAGCCCAAGGACAT
AGTTCAGAGCTATTCTGTCCAGTACTTGATTCTGAATCTAATACAAAGGGACGCAACTAGAAAT
ATAATAAAGTTCTATGTTTGGCAAGAAGA

hide sequence

RefSeq Acc Id:

XM_017596479 ⟹ XP_017451968

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	83,320,974 - 83,334,921 (-)	NCBI
mRatBN7.2	9	75,871,841 - 75,885,801 (-)	NCBI
Rnor_6.0	9	81,569,289 - 81,582,650 (-)	NCBI

Sequence:

show sequence

CTCAGAGATCTGTCTGCCTTTGAGTGCTGGGATTAAAGGAGTACGCACCACCACCTGGCCTTCT
TTCTTTATAAGCATACCAAGGCCACCCTAACTGGTGATGTGCCTGGGATCTTACAACCCCACAG
TACAATTCTGTCCTCAAAGATAAGGGTGATGGAGACGCTGCTGGATTGGGCCTTCCCATATTCT
CTAGGGCTTGGCTTTCTGCTTCTGTGGATCCAGAGTTAAGGACTCTTGAGGTAGGAGCTGAGGA
GTGGCCTGGACTCTGGAGTAATGGGGTTGGCAGGATAAGCAAGAAATAATGAGGGAACTGGAGA
GGGTGCTGTATTCTGGTAACTGTGGCTCTTTTGCTGAGCTTTCAGGTACTGGGCCAGGCTGGGA
AGGAAATTTCTAAATTCCTTAACACATACCCCTCCCCCAAGATAGCATCTCACTACCATCTCCT
GGCTGGCCTGGAACTTGCTATGTAGAACACGCTGGCCTTGAACTCACAGAGGTCCCCCTGCCTC
TGCTAGAATTAGAGGCATGAAGTACCAAATTCTTGGCCAACAGGGCCTGTCCTGGGCTGGAACT
CTTGGGTTTCCTGATTGTAGCTGACATCAGTGTTTGCATCCCTCTACTTCACATCTGATCCTGA
GGCCATAAGAGTACGGTGTGGATTCTGGGTTCCTGGGTGCTTCCTTCACTTCTCTGCCCAGTGG
CTATGTGCTGGGATGGGAGGTGTTTTCTTAGGGTGAATGGAGGGAAGAGGCTAGACATGGAGAC
CTGGTTATGGGGTGGGGCTTCCTGAGATGCACGCTGAGCAATTCTTTCCATTCTGGTCTGGGCA
TCAGTTTCTGGCATTCAGGTAGGCAAAGCTGCCTGGACTGCTCTTTTCTGTCCTTCCCTCCAGA
CACACCCTCTTGCTTGTAACCCCAGTAGCTCAGTCTTCTAGCTACAGATTCCAGACATTTTATA
TGCCACAGGAGAGCTGGAGCCAGAGTCTAACCTCCTCAGCAAGCCAGGTACAGAGCCGGTCCCT
GAGACAACCAGGATGTAGTAGGGAACAGCCTCCCCAGATTCTACACTGAAAACCTTGGCCACCC
ACAAATCCTGCTGTCTGGGCCTAGTACACACTGCTGCCGCCACTGTGACTGAGTCAGGGAGAGC
CTTGGGTTTTCTCTGATGTGTATGGATTACCTGAGAAAAAAGTACAAGTCTAGGCATGGAACTA
CGAGGATGGGGCAGTCTGGACACTGATCACAAGCTGGTGTTTGCTCAGAGACACTGGATGCCTT
CTCAACTTAGGAAAATGCTCAGTTCTTTGTGGTCCCTGGAGCCTGTGAAGCCCTCACAGCCTTG
GGTGCAGAAGACCCGACTCCGCCTTATCTGTACTCTGTCTCCAGGTCTCTTTTCTGCCCTTGTC
CCTCTTCCTACTTCTTTCCTTCTCTAGTCCCCATGCCTCAGGCTGGCTAAAGAATGACTGACCA
CTTCCTTTAGGGCAATGCTAGCCCCAGACCTCAGCCCTAGTGGAAGGCTTGGTGGAAGGGTCCT
CATGGAGGCCATGCAGGAGCTGGGGCCTGCTTAAAAGCCACATTGGGGGCTCTGGGTTCCAGAG
GTTCTTGTTGGTCTGACAGGTATTGTCCATGCTGTGGCTTAGTGGTGAGTGAGGCAGAGGCTGG
CAACTTTCTGGCTGGTACAAAACAAGAGTTTTACTCTCTTGCACCCAGGGTCAGACAGCCAGGA
TTGTGTTGTAGCCTAGGATCAACTTGTCTCAAGTGGGTGGGTGTCTCTGACATTTTGAGTCTCC
GTGTGCTGATGGATGGGATCGGAGTGCACTGTGGAGGGCTGAATTGTTAGGGATCCAATTCTGT
GTAATCCTGCTATTACCACTGGAGGATCTGAGCCAAAGCCATGGGAAATGGCTGAGAAATCGGA
AACAGATAGACTATCCAAATAAGGACTCAAAAAGGACATCAGAGTCAGCCTGGGGGTAAGCCTT
GACTTCGTTATACCCTGGTGAGGTATCCCTGGCCAACTTTCTTCACTTCCCTAAATCTCGGTGT
CTCTGTAATAGCAATGTTCCCCTGCTGGCATGCTCTACGGAGGTAGTGAAGTCACAACTGAAAA
CAGAGTATCCCTGGCTAGGCTGGGCACTGTTCTAAGAGCTCAGGCCTCTCTTTCCTTTTCTTTT
TAAATTAATTTATTTTTATTTTATGTGCATTGGTGTTCTGCCTGCCTGTATGTCTGTGTGAGGG
TGCCAGATCTCCTGGTGTAACTGGTATTACATACAGTTGTAAGCTGCCATGTGAATGCTGGGAC
TTGAACCCAGGTCCTCTGGAAGAGCATCCAGTGCTCTTAGCTGCTGAGCCATCTCTCCAGCCCG
CTGTGTATATTCTCCCTTAATTTTTACGGTTCCTTGGGAGGCACTGTTAACTGGTGTTGAACGT
CTTCCAGGTGAGGACCCTGGTTCAAAAGGGCAGGTGGTGGAGGACTCAGAGAACTATGCTGGGA
TCAGGCAGGTTCACTGGCAAATTCCTCTGACTACCAGCATGACTGGGCAGGGACAGGGAGTACT
GGAGGGAGGCCCATGAGTCAGCAGCTGAGCTACCCTAGACCCTGGAGCCCCATCCCAGGTAGTG
AGTCACTGTGGCCTCTCACTTGGGAAGAGGGAGGGGCCCCTGCATGCTGAACAAAAGGCAGAGG
CCCTGCGTGGTCAGTTTCCCAGGGTCACAGTCAGCTGTTAGAGCCATCATTGAGCCCTGAGATC
ACTCAACTACCCCATTTCACACAAACCTTGTGAGAGTGAAGGGCCAGGTCATTGTGACATCATG
GCTTGGGACTCTGACAACAGGGCTTTTCCTGGCAGTGCCTTTTAGGACTGTTTAACCATCAGCC
TGCACCACCATCCCAATGGAGGATGTCAGATAGATCTAGATTACTGAAATAAGGGCTATAATGA
AATGACAGGCACCTCTATACCAAAGAAGGGCTTTCTTTTCTCTGGGGAGATGAAGAACAGCTTT
CCTCAGTGTGACCTTCTCAGAGACCTGGCCTGTTACTCGATCTTGACTGATTTCCCTCTGAATA
AATCCTGTTGAGAGGAGATGTGAACGTCCTCTATTTGATCTCTGAGCTGCACTGGGTGCCCTGG
AAAGAGAAGCTGGGACTCTCCTCCTTCCAGCAGCAGCTCTGAAGGTCCCAGAAGCTAGGGTTTC
CCCTCAGCCCTTGAGTGGCCATGTCCAATCCCACTGCCCCACCTCCCTATGAGGACCACAACCC
CCTGTACCCTGGCCGTCCACCTCCTGGGGGCTACGGACAGCCGTCTGTCCTGCCTGGTGGTTAC
CCTGCCTACCCCGCCTACCCTCAACCTGGTTACGGGCACCCTGCTGGCTACCCACAGCCGATTC
CTCCTGTCCATCCAATGCCCATGAACTACGGCCATGACTATAGTGAGGAGGAGAGAGCAGGAAG
TGACAGCTTTGGTCCTGGAGAATGGGATGACCGGAAAGTCCGACATACCTTCATCCAAAAGGTG
TACTGCATCATTTCTGTCCAGCTGCTCATCACTGTGGCCATCATTGCTGTCTTCACCTTTGTGG
AACCAGTCAGTGAATATGTGAGGAGCAATGTGGCGGTGTACTACGTGTCCTATGCTGTCTTCAT
TGTCACCTACCTGATCCTTGTCTGCTGCCAGGGACCCAGACGCCGATTCCCATGGAACATTATC
CTGCTAACCATCTTTACTTTGGCTTTGGGCTTTATGACAGGCGCTATTTCCAGTATGTATGAAA
CCAAAGCTGTCATCATTGCTATGATCATCACTGCCGTGGTATCCATTTCTGTCACCATCTTCTG
CTTTCAGACTAAGGTGGACTTCACCTCATGTACAGGCCTCATCTGTGTGCTGGGAATAGTGTTG
GCAGTAACCGGTGCTGTCACAAGCGTAGTGCTGTTTTTTGAATATATTTACTGGCTCCACATGG
TCTACGCAGGTCTGGGGGCCATCTGTTTCACCCTGTTCCTGGCTTATGACACGCAGCTGGTCCT
GGGGAACCGGAAGCATACCATCAGCCCAGAGGACTACATCACAGGCGCCCTGCAGATCTACACA
GATATAGTCTACATCTTCACCTTTGTGCTCCAGCTTGTAGGAAATCGAGACTGAGACAGAGAGG
GAGAGAGATGTCCCTTTCACTGGCCTGGGACTCACATTGTCTCCCCTCAAGTAATCTGCTCAGT
TTCCTCTCCGTCCTGGGGATGGGAGGGTCTCTGGCTGTGTTCTGTGAGAGCCATGAGTGCTGGG
GTTACTGGCACCTCTTGCCCTTGGTGGGCTTGATAAGAACTAGATTGAAGGTGTTTCTCCTTCC
CTTCACCCACAATGAGTATGCACCAAACTTTTCATGTGTGTGTGTGTGTGGAGGGGGAGTAGGG
AGCCGGTGAACACAGGAGCTCTGAGGTGAAGAGGGTCCTCTCCCACCTCGGCCACAGGGTTCTA
GGCTAGGAGCTGGAGCTGTTTCCCTCCTGGATCCAATAAAGCCAGATGCTTCACCTCTAGCTCC
AGTGCTCATAGGCCACTTATGCTGTCTGAACTCTTTAGGCTTGGCATCTCTTAGCTTTAGAAGC
TAGAAGAGATCTGTGCCCTGGGGTCTCTCTGTTCCAACCCCATCTTCCAGTAACACGTATCCAT
TATTTATCTGGGCTAGGGGAAAAGACAGTGAGCAAAGACAGTATGGGGGGAGAGTAGCACAGAA
TGGTGTCCCCCTGACTGGCACCCATCTTGGCTACCATCCAGGTCCAAAGTGCTTGAGGCCTTCT
GAGGCTTTTAAAATCTGACCTAGAGGGACCTCCTACTTTGCTTTGACACACAGAGGTGGAGGTC
AGCAAGTAAGGTGGATTGTGGGATGAGTGGGGACAGGGAAAGTGCCTTGGGTGCCCCTCTGGTT
TGAGAAACTGAAACGTACTCTGGTATGTAGCAACCTTCCTCCCCAACACAAGTTCAATCTGTTC
TGTGTTCCTACTGGGAGATTTTAGACTAAAACCCCTCTTCAAGCCAGCTGCTGTTTCTCTGTAA
TCCAAGTGCCTCCAACTGGCACCATGGTGGGGATAGAAGCCAGTTTATCAGGTGGAGTAGAAAC
CTTATTAGCCCAAGGACATAGTTCAGAGCTATTCTGTCCAGTACTTGATTCTGAATCTAATACA
AAGGGACGCAACTAGAAATATAATAAAGTTCTATGTTTGGCAAGAAGA

hide sequence

RefSeq Acc Id:

XM_039083668 ⟹ XP_038939596

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	83,320,974 - 83,334,922 (-)	NCBI
mRatBN7.2	9	75,871,841 - 75,885,802 (-)	NCBI

RefSeq Acc Id:

XM_039083669 ⟹ XP_038939597

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	83,320,974 - 83,338,469 (-)	NCBI
mRatBN7.2	9	75,871,841 - 75,888,658 (-)	NCBI

RefSeq Acc Id:

XM_039083670 ⟹ XP_038939598

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	83,320,974 - 83,329,513 (-)	NCBI
mRatBN7.2	9	75,871,835 - 75,889,366 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001007714	(Get FASTA)	NCBI Sequence Viewer
	XP_017451966	(Get FASTA)	NCBI Sequence Viewer
	XP_017451967	(Get FASTA)	NCBI Sequence Viewer
	XP_017451968	(Get FASTA)	NCBI Sequence Viewer
	XP_038939596	(Get FASTA)	NCBI Sequence Viewer
	XP_038939597	(Get FASTA)	NCBI Sequence Viewer
	XP_038939598	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH79087	(Get FASTA)	NCBI Sequence Viewer
	EDL75346	(Get FASTA)	NCBI Sequence Viewer
	EDL75347	(Get FASTA)	NCBI Sequence Viewer
	EDL75348	(Get FASTA)	NCBI Sequence Viewer
	EDL75349	(Get FASTA)	NCBI Sequence Viewer
	EDL75350	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000019848
	ENSRNOP00000019848.5
	ENSRNOP00000072508.2
	ENSRNOP00000073792.2

RefSeq Acc Id:

NP_001007714 ⟸ NM_001007713

- UniProtKB:

Q6AYE0 (UniProtKB/TrEMBL), A0A0G2K6F5 (UniProtKB/TrEMBL), A0A9K3Y6R8 (UniProtKB/TrEMBL), A0A0G2K356 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSNPTAPPPYEDHNPLYPGRPPPGGYGQPSVLPGGYPAYPAYPQPGYGHPAGYPQPIPPVHPMP
MNYGHDYSEEERAGSDSFGPGEWDDRKVRHTFIQKVYCIISVQLLITVAIIAVFTFVEPVSEYV
RSNVAVYYVSYAVFIVTYLILVCCQGPRRRFPWNIILLTIFTLALGFMTGAISSMYETKAVIIA
MIITAVVSISVTIFCFQTKVDFTSCTGLICVLGIVLAVTGAVTSVVLFFEYIYWLHMVYAGLGA
ICFTLFLAYDTQLVLGNRKHTISPEDYITGALQIYTDIVYIFTFVLQLVGNRD

hide sequence

RefSeq Acc Id:	XP_017451967 ⟸ XM_017596478
- Peptide Label:	isoform X1
- UniProtKB:	Q6AYE0 (UniProtKB/TrEMBL), A0A0G2K6F5 (UniProtKB/TrEMBL), A0A9K3Y6R8 (UniProtKB/TrEMBL), A0A0G2K356 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSNPTAPPPYEDHNPLYPGRPPPGGYGQPSVLPGGYPAYPAYPQPGYGHPAGYPQPIPPVHPMP MNYGHDYSEEERAGSDSFGPGEWDDRKVRHTFIQKVYCIISVQLLITVAIIAVFTFVEPVSEYV RSNVAVYYVSYAVFIVTYLILVCCQGPRRRFPWNIILLTIFTLALGFMTGAISSMYETKAVIIA MIITAVVSISVTIFCFQTKVDFTSCTGLICVLGIVLAVTGAVTSVVLFFEYIYWLHMVYAGLGA ICFTLFLAYDTQLVLGNRKHTISPEDYITGALQIYTDIVYIFTFVLQLVGNRD hide sequence

RefSeq Acc Id:	XP_017451968 ⟸ XM_017596479
- Peptide Label:	isoform X1
- UniProtKB:	Q6AYE0 (UniProtKB/TrEMBL), A0A0G2K6F5 (UniProtKB/TrEMBL), A0A9K3Y6R8 (UniProtKB/TrEMBL), A0A0G2K356 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSNPTAPPPYEDHNPLYPGRPPPGGYGQPSVLPGGYPAYPAYPQPGYGHPAGYPQPIPPVHPMP MNYGHDYSEEERAGSDSFGPGEWDDRKVRHTFIQKVYCIISVQLLITVAIIAVFTFVEPVSEYV RSNVAVYYVSYAVFIVTYLILVCCQGPRRRFPWNIILLTIFTLALGFMTGAISSMYETKAVIIA MIITAVVSISVTIFCFQTKVDFTSCTGLICVLGIVLAVTGAVTSVVLFFEYIYWLHMVYAGLGA ICFTLFLAYDTQLVLGNRKHTISPEDYITGALQIYTDIVYIFTFVLQLVGNRD hide sequence

RefSeq Acc Id:	XP_017451966 ⟸ XM_017596477
- Peptide Label:	isoform X1
- UniProtKB:	Q6AYE0 (UniProtKB/TrEMBL), A0A0G2K6F5 (UniProtKB/TrEMBL), A0A9K3Y6R8 (UniProtKB/TrEMBL), A0A0G2K356 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSNPTAPPPYEDHNPLYPGRPPPGGYGQPSVLPGGYPAYPAYPQPGYGHPAGYPQPIPPVHPMP MNYGHDYSEEERAGSDSFGPGEWDDRKVRHTFIQKVYCIISVQLLITVAIIAVFTFVEPVSEYV RSNVAVYYVSYAVFIVTYLILVCCQGPRRRFPWNIILLTIFTLALGFMTGAISSMYETKAVIIA MIITAVVSISVTIFCFQTKVDFTSCTGLICVLGIVLAVTGAVTSVVLFFEYIYWLHMVYAGLGA ICFTLFLAYDTQLVLGNRKHTISPEDYITGALQIYTDIVYIFTFVLQLVGNRD hide sequence

Ensembl Acc Id:

ENSRNOP00000072508 ⟸ ENSRNOT00000089985

Ensembl Acc Id:

ENSRNOP00000073792 ⟸ ENSRNOT00000089952

Ensembl Acc Id:

ENSRNOP00000019848 ⟸ ENSRNOT00000019848

RefSeq Acc Id:	XP_038939598 ⟸ XM_039083670
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038939597 ⟸ XM_039083669
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2K6F5 (UniProtKB/TrEMBL), A0A9K3Y6R8 (UniProtKB/TrEMBL), Q6AYE0 (UniProtKB/TrEMBL), A0A0G2K356 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038939596 ⟸ XM_039083668
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2K6F5 (UniProtKB/TrEMBL), A0A9K3Y6R8 (UniProtKB/TrEMBL), Q6AYE0 (UniProtKB/TrEMBL), A0A0G2K356 (UniProtKB/TrEMBL)

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q6AYE0-F1-model_v2	AlphaFold	Q6AYE0	1-309	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13696752

Promoter ID:

EPDNEW_R7271

Type:

multiple initiation site

Name:

Tmbim1_2

Description:

transmembrane BAX inhibitor motif containing 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_R7272

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	9	81,579,791 - 81,579,851	EPDNEW

RGD ID:

13696747

Promoter ID:

EPDNEW_R7272

Type:

multiple initiation site

Name:

Tmbim1_1

Description:

transmembrane BAX inhibitor motif containing 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_R7271

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	9	81,586,513 - 81,586,573	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1359409	AgrOrtholog
BioCyc Gene	G2FUF-27141	BioCyc
Ensembl Genes	ENSRNOG00000014797	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000019848	ENTREZGENE
	ENSRNOT00000019848.6	UniProtKB/TrEMBL
	ENSRNOT00000089952.2	UniProtKB/TrEMBL
	ENSRNOT00000089985.2	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7123233	IMAGE-MGC_LOAD
InterPro	Bax_inhibitor-1-related	UniProtKB/TrEMBL
KEGG Report	rno:316516	UniProtKB/TrEMBL
MGC_CLONE	MGC:94053	IMAGE-MGC_LOAD
NCBI Gene	316516	ENTREZGENE
PANTHER	PROTEIN LIFEGUARD 3	UniProtKB/TrEMBL
	UPF0005	UniProtKB/TrEMBL
Pfam	Bax1-I	UniProtKB/TrEMBL
PhenoGen	Tmbim1	PhenoGen
RatGTEx	ENSRNOG00000014797	RatGTEx
UniProt	A0A0G2K356	ENTREZGENE, UniProtKB/TrEMBL
	A0A0G2K6F5	ENTREZGENE
	A0A9K3Y6R8	ENTREZGENE, UniProtKB/TrEMBL
	A6JVT9_RAT	UniProtKB/TrEMBL
	F7FKW1_RAT	UniProtKB/TrEMBL
	Q6AYE0	ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary	A0A0G2K6F5	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2006-03-30	Tmbim1	transmembrane BAX inhibitor motif containing 1	MGC94053	similar to RECS1	Symbol and Name updated	1299863	APPROVED
2005-07-29	MGC94053	similar to RECS1			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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