Galc (galactosylceramidase) - Rat Genome Database

Name: Galc
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

	Submit Data \| Help \| Video Tutorials \| News \| Publications \| Download \| REST API \| Citing RGD \| Contact
	Search RGD Grant Resources Citing RGD About Us Contact Us Genes QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data OntoMate (Literature Search) JBrowse (Genome Browser) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) RatMine GViewer (Genome Viewer) Overgo Probe Designer ACP Haplotyper Genome Scanner Aging & Age-Related Disease Cancer Cardiovascular Disease COVID-19 Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease Find Models new Genetic Models Autism Models PhenoMiner (Quantitative Phenotypes) Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive Pathways Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Poster Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
	Advanced Search (OLGA)

Gene: Galc (galactosylceramidase) Rattus norvegicus

Analyze

Symbol:

Galc

Name:

galactosylceramidase

RGD ID:

1359384

Description:

Predicted to have galactosylceramidase activity. Predicted to be involved in galactosylceramide catabolic process and myelination. Human ortholog(s) of this gene implicated in Krabbe disease. Orthologous to human GALC (galactosylceramidase); PARTICIPATES IN Fabry disease pathway; Gaucher's disease pathway; Krabbe disease pathway; INTERACTS WITH 1-naphthyl isothiocyanate; bisphenol A; 1,1-dichloroethene (ortholog).

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Also known as:

galactocerebrosidase

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	GALC (galactosylceramidase)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Galc (galactosylceramidase)	HGNC	Treefam, EggNOG, OrthoMCL, NCBI, OMA, HomoloGene, Inparanoid, Panther, OrthoDB, Ensembl
Chinchilla lanigera (long-tailed chinchilla):	Galc (galactosylceramidase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	GALC (galactosylceramidase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	GALC (galactosylceramidase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Galc (galactosylceramidase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	GALC (galactosylceramidase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (African green monkey):	GALC (galactosylceramidase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Galc (galactosylceramidase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	GALC (galactosylceramidase)	Alliance	DIOPT (HGNC\|TreeFam)

Latest Assembly:

Rnor_6.0 - RGSC Genome Assembly v6.0

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	6	117,452,888 - 117,522,281 (-)	NCBI
Rnor_6.0 Ensembl	6	122,178,602 - 122,239,614 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	6	122,177,195 - 122,239,411 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	6	131,392,298 - 131,454,514 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	6	122,355,659 - 122,416,986 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	6	122,359,405 - 122,420,733 (-)	NCBI
Celera	6	115,018,409 - 115,078,607 (-)	NCBI		Celera
Cytogenetic Map	6	q32	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Creutzfeldt-Jakob disease (ISO)

Experimental Liver Cirrhosis (ISO)

genetic disease (ISO)

intellectual disability (ISO)

Krabbe disease (ISO)

leukodystrophy (ISO)

Mycoplasma pneumoniae pneumonia (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,1-dichloroethene (ISO)

1-naphthyl isothiocyanate (EXP)

17alpha-ethynylestradiol (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

3,4-methylenedioxymethamphetamine (ISO)

5-aza-2'-deoxycytidine (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP)

butanal (ISO)

choline (ISO)

cyclophosphamide (ISO)

divanadium pentaoxide (ISO)

dorsomorphin (ISO)

entinostat (ISO)

ethanol (ISO)

folic acid (ISO)

genistein (ISO)

hydroquinone O-beta-D-glucopyranoside (ISO)

L-methionine (ISO)

methylmercury chloride (ISO)

nickel sulfate (ISO)

potassium chromate (ISO)

SB 431542 (ISO)

sodium arsenite (ISO)

tamoxifen (ISO)

tunicamycin (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

galactosylceramide catabolic process (IBA,ISO)

myelination (ISO)

Cellular Component

lysosome (IBA)

Molecular Function

galactosylceramidase activity (IBA,ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

Fabry disease pathway (ISO)

Gaucher's disease pathway (ISO)

Krabbe disease pathway (ISO)

metachromatic leukodystrophy pathway (ISO)

sphingolipid metabolic pathway (IEA,ISO)

References

References - curated


1.	Andres Benito P, etal., Prion. 2018;12(3-4):216-225. doi: 10.1080/19336896.2018.1500076. Epub 2018 Jul 27.
2.	Ang CW, etal., J Neuroimmunol. 2002 Sep;130(1-2):179-83. doi: 10.1016/s0165-5728(02)00209-6.
3.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4.	Meyer Sauteur PM, etal., Ann Neurol. 2016 Oct;80(4):566-80. doi: 10.1002/ana.24755. Epub 2016 Aug 26.
5.	Meyer Sauteur PM, etal., Infect Immun. 2019 Jan 24;87(2). pii: IAI.00663-18. doi: 10.1128/IAI.00663-18. Print 2019 Feb.
6.	Meyer Sauteur PM, etal., J Neuroimmunol. 2018 Jan 15;314:13-16. doi: 10.1016/j.jneuroim.2017.11.011. Epub 2017 Nov 16.
7.	MGD data from the GO Consortium
8.	OMIM Disease Annotation Pipeline
9.	Pipeline to import KEGG annotations from KEGG into RGD
10.	Pipeline to import SMPDB annotations from SMPDB into RGD
11.	RGD automated data pipeline
12.	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
13.	RGD automated import pipeline for gene-chemical interactions
14.	Sakai N, etal., J Neurochem 1996 Mar;66(3):1118-24.
15.	Shigematsu H, etal., J Neurochem. 1990 Nov;55(5):1659-62. doi: 10.1111/j.1471-4159.1990.tb04953.x.

Additional References at PubMed

PMID:11371512	PMID:11734583	PMID:18614015	PMID:23376485

Genomics

Comparative Map Data

Galc
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	6	117,452,888 - 117,522,281 (-)	NCBI
Rnor_6.0 Ensembl	6	122,178,602 - 122,239,614 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	6	122,177,195 - 122,239,411 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	6	131,392,298 - 131,454,514 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	6	122,355,659 - 122,416,986 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	6	122,359,405 - 122,420,733 (-)	NCBI
Celera	6	115,018,409 - 115,078,607 (-)	NCBI		Celera
Cytogenetic Map	6	q32	NCBI

GALC
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	14	87,837,820 - 87,993,665 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	14	87,933,014 - 87,993,665 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	14	88,399,358 - 88,460,009 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	14	87,469,111 - 87,529,660 (-)	NCBI	NCBI36		hg18	NCBI36
Build 34	14	87,469,112 - 87,529,596	NCBI
Celera	14	68,445,026 - 68,505,593 (-)	NCBI
Cytogenetic Map	14	q31.3	NCBI
HuRef	14	68,569,486 - 68,630,135 (-)	NCBI		HuRef
CHM1_1	14	88,337,479 - 88,398,139 (-)	NCBI		CHM1_1

Galc
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	12	98,168,543 - 98,226,565 (-)	NCBI	GRCm39		mm39
GRCm39 Ensembl	12	98,168,553 - 98,225,718 (-)	Ensembl
GRCm38	12	98,202,287 - 98,259,459 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	12	98,202,294 - 98,259,459 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	12	99,440,510 - 99,497,547 (-)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	12	98,603,350 - 98,660,387 (-)	NCBI			mm8
Celera	12	99,428,771 - 99,484,984 (-)	NCBI		Celera
Cytogenetic Map	12	E	NCBI
cM Map	12	49.83	NCBI

Galc
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955438	10,667,807 - 10,704,384 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955438	10,667,807 - 10,704,386 (-)	NCBI	ChiLan1.0	ChiLan1.0

GALC
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	14	87,905,098 - 87,965,769 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	14	87,905,098 - 87,965,770 (-)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	14	68,545,070 - 68,605,730 (-)	NCBI	Mhudiblu_PPA_v0		panPan3

GALC
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1 Ensembl	8	59,267,818 - 59,324,967 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
CanFam3.1	8	59,266,693 - 59,324,825 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

Galc
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936488	15,444,184 - 15,519,395 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

GALC
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	109,894,188 - 109,961,407 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	7	109,894,576 - 109,961,407 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	116,348,927 - 116,415,759 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

GALC
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	24	65,556,763 - 65,621,693 (-)	NCBI
ChlSab1.1 Ensembl	24	65,558,074 - 65,621,258 (-)	Ensembl

Galc
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624734	14,355,349 - 14,462,869 (+)	NCBI

Position Markers

RH143148

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	6	122,178,195 - 122,178,327	NCBI	Rnor6.0
Rnor_5.0	6	131,393,298 - 131,393,430	UniSTS	Rnor5.0
RGSC_v3.4	6	122,355,058 - 122,355,190	UniSTS	RGSC3.4
Celera	6	115,017,808 - 115,017,940	UniSTS
RH 3.4 Map	6	862.9	UniSTS
Cytogenetic Map	6	q32	UniSTS

RH134876

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	6	122,177,271 - 122,177,471	NCBI	Rnor6.0
Rnor_5.0	6	131,392,374 - 131,392,574	UniSTS	Rnor5.0
RGSC_v3.4	6	122,354,134 - 122,354,334	UniSTS	RGSC3.4
Celera	6	115,016,884 - 115,017,084	UniSTS
RH 3.4 Map	6	862.9	UniSTS
Cytogenetic Map	6	q32	UniSTS

SHGC-152427

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	6	122,227,137 - 122,227,932	NCBI	Rnor6.0
Rnor_6.0	6	125,303,851 - 125,304,646	NCBI	Rnor6.0
Rnor_5.0	6	134,520,741 - 134,521,536	UniSTS	Rnor5.0
Rnor_5.0	6	131,442,240 - 131,443,035	UniSTS	Rnor5.0
RGSC_v3.4	6	122,404,562 - 122,405,357	UniSTS	RGSC3.4
Celera	6	115,066,177 - 115,066,972	UniSTS
Cytogenetic Map	6	q32	UniSTS

QTLs in Region (Rnor_6.0)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
731173	Uae22	Urinary albumin excretion QTL 22	10.1		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	6	68781170	147991367	Rat
2290393	Uae37	Urinary albumin excretion QTL 37		0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	6	68781170	147991367	Rat
724536	Uae7	Urinary albumin excretion QTL 7	3.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	6	75623277	136143011	Rat
1331799	Bp211	Blood pressure QTL 211	3.66407		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	6	75623277	136426962	Rat
1581550	Pur8	Proteinuria QTL 8			total urine protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	6	75623393	136142742	Rat
1581563	Uae33	Urinary albumin excretion QTL 33			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	6	75623393	136142742	Rat
738034	Anxrr5	Anxiety related response QTL 5	5.9		exploratory behavior trait (VT:0010471)	percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)	6	88507712	133507712	Rat
724513	Uae14	Urinary albumin excretion QTL 14	6.5		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	6	88996335	139410483	Rat
10054138	Gmadr3	Adrenal mass QTL 3	3.68	0.00045	adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	6	89631358	134631358	Rat
10054123	Srcrt6	Stress Responsive Cort QTL 6	2.5	0.0043	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	6	89631358	134631358	Rat
1300076	Glom8	Glomerulus QTL 8	7	0.000000009	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli directly contacting the kidney surface (CMO:0001001)	6	91703409	136703409	Rat
2303624	Vencon5	Ventilatory control QTL 5	4.45		respiration trait (VT:0001943)	minute ventilation (VE) (CMO:0000132)	6	92879510	137879510	Rat
1331725	Bp212	Blood pressure QTL 212	3.52475		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	6	97949772	133849286	Rat
12801411	Schws8	Schwannoma susceptibility QTL 8			nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	6	99273921	144273921	Rat
61414	Pia3	Pristane induced arthritis QTL 3	4.5		joint integrity trait (VT:0010548)	post-insult time to onset of experimental arthritis (CMO:0001450)	6	99273921	144792678	Rat
8552796	Vie3	Viral induced encephalitis QTL 3	2.6		brain integrity trait (VT:0010579)	encephalitis incidence/prevalence measurement (CMO:0002361)	6	101207574	147991367	Rat
1358355	Srcrt4	Stress Responsive Cort QTL 4	6.39		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	6	104363890	147991367	Rat
2313399	Anxrr28	Anxiety related response QTL 28			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	6	104381930	138066274	Rat
1331797	Bp213	Blood pressure QTL 213	3.291		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	6	108154445	133849286	Rat
4145118	Mcs26	Mammary carcinoma susceptibility QTL 26		0.0001	mammary gland integrity trait (VT:0010552)	post-insult time to mammary tumor formation (CMO:0000345)	6	111134524	138065254	Rat
737976	Pia24	Pristane induced arthritis QTL 24			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	6	117355600	147991367	Rat
1298087	Iddm18	Insulin dependent diabetes mellitus QTL 18		0.0001	urine glucose amount (VT:0001758)	percentage of study population developing diabetes mellitus during a period of time (CMO:0001114)	6	121224054	135658578	Rat

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	468
Count of miRNA genes:	241
Interacting mature miRNAs:	289
Transcripts:	ENSRNOT00000005015
Prediction methods:	Microtar, Miranda
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium			8		8					22	20
Low	3	43	49	41	11	41	8	9	74	13	21	11	8
Below cutoff								2

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001005888	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008764799	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017594164	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039112331	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039112332	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039112333	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039112334	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039112335	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AY386370	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ223346	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ228993	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000167	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000005015 ⟹ ENSRNOP00000005015

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	6	122,178,602 - 122,239,614 (-)	Ensembl

RefSeq Acc Id:

NM_001005888 ⟹ NP_001005888

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	6	117,454,489 - 117,515,811 (-)	NCBI
Rnor_6.0	6	122,178,796 - 122,239,411 (-)	NCBI
Rnor_5.0	6	131,392,298 - 131,454,514 (-)	NCBI
RGSC_v3.4	6	122,355,659 - 122,416,986 (-)	RGD
Celera	6	115,018,409 - 115,078,607 (-)	RGD

Sequence:

show sequence

TAACAGCCGACCTAAGGCTTCCCAGCAACGCCAAGCAAAAGTCATGACCGCCGCCGCGGGCTCG
GCGAGCCGTGTCGCGGTGCCCTTGTTGTTGTGCGCGATGCTGGCGCCCAGCGGCGCCTACGAGC
TAGACGACTCCGACGGGCTGGGCCTGGAGTTCGATGGCATCGGCGCAGTCAGCGGCGGCGGGGC
AACCTCCCGGCTTCTAGTAAATTACCCAGAGCCCTATCGTTCTGAAATACTGGATTATCTATTT
AAGCCAAACTTCGGTGCCTCTCTGCATATTCTAAAAGTGGAAATAGGTGGCGATGGACAAACAA
CAGACGGCACTGAACCCTCCCACATGCACTATGAGCTAGATGAGAATTATTTCCGAGGCTATGA
GTGGTGGCTAATGAAGGAAGCTAAGAAGAGGAACCCAAATATTATACTTATGGGGTTGCCATGG
TCATTCCCTGGATGGCTGGGCAAAGGCTTCAGTTGGCCTTATGTAAATCTTCAGCTGACTGCCT
TCTATATTGTGAGATGGATTTTGGGTGCCAAGCATTATCATGACCTGGACATTGATTATATTGG
GATATGGAATGAAAGGCCGTTTGATGCCAACTATATAAAGGAATTAAGAAAAATGCTTGATTAT
GAAGGTCTCCAGCGAGTGAGAATCATAGCAAGTGATAATCTCTGGGAGCCAATTTCCTCTTCTG
TGCTGCTTGACCAGGAGCTCTGGAAGGTGGTTGATGTTATAGGAGCTCATTATCCCGGAACCTA
CACAGTCTGGAATGCAAAGATGTCAGGGAAGAAGCTTTGGTCGTCGGAAGACTTTAGCACTGTC
AACAGTAATGTTGGCGCAGGCTGTTGGGGTCGCATATTGAACCAGAATTACATCAACGGCAATA
TGACCGCCACAATTGCTTGGAATTTGGTGGCTAGTTACTATGAAGAATTGCCCTATGGACGAAG
TGGATTGATGACAGCCCAGGAGCCGTGGAGTGGACATTATGTAGTAGCATCTCCTATCTGGGTA
TCAGCTCATACAACTCAATTTACTCAACCAGGCTGGTATTACCTGAAGACAGTTGGCCATCTAG
AGAAAGGAGGAAGCTATGTAGCTCTGACTGATGGCTTGGGGAATTTCACCATCATCGTTGAAAC
TATGAGTCGTCAACATTCTATGTGTATACGGCCATATCTACCGTATTATAATGTCTCACGTCAG
CTGGCCACCTTCATTCTAAAGGGGTCTTTGAAAGAAATACAAGAGCTGCAGGTGTGGTACACCA
AGCTTGGAACAACACCAGAGAAACTTCATTTTAAACAACTGGAAACTCTATGGCTCCTTGACGG
CAGCGGCAGTTTCTCACTGGAACTGGAGGAGGATGAGATGTTCACACTCACCACTCTGACCACA
GGGCACAAAGGCAGCTACCGTCCCCCTCCCAAGTCACAGCCCTTCCCAACCAGCTATAAGGATG
ATTTCAACGTTGAGTACCCATTATTTAGTGAAGCTCCGAATTTTGCTGATCAGACCGGCGTGTT
CGAGTACTACACGAATAACGAAGACCTTGAGCATCGCTTCACACTGCGCCAAGTTCTCAACCAA
CGACCTATTACCTGGGCCGCGGATGCCTCCAGCACGATCAGTGTCATAGGCGATCACCACTGGA
GCAACATGACTGTGCAGTGTGATGTTTACATAGAGACTCCTCGGACTGGCGGTGTGTTCATTGC
TGGAAGAGTGAATAAAGGTGGTATCTTGATCAGAACTGCTTCAGGAGTTTTCTTCTGGATTTTT
GCAAATGGCTCTTACAGAGTTACAGCCGACCTGGGTGGGTGGATAACATATGCTTCAGGACATG
CTGACGTTACAGCAAAGCGATGGTATACACTCACCTTAGGCATTAAGGGTTATCTCGCCTCTGG
TATGTTGAACGGCAAGATCCTGTGGGAAAATGTGCCCGTGAAATACCCAGGGCATGGCTGGGCT
GCGATCGGAACGCATACCTTCGAGTTTGCGCAGTTTGACAACTTTCATGTGGAAGCTGCTCGCT
AATATT

hide sequence

RefSeq Acc Id:

XM_008764799 ⟹ XP_008763021

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	6	117,452,888 - 117,507,102 (-)	NCBI
Rnor_6.0	6	122,177,195 - 122,230,817 (-)	NCBI

Sequence:

show sequence

TGTGCAGAGGTGGCAGTCTGTCCTGTGGCCTCGGGATGTCTGCCTCAGGATAGCTCTTAACATG
GCTGTAAGATATTGATGGGTAAAACTGTCTGAGATTCATCTAATTTATCCTAGCCCCCAGATGA
GTGCTCTTAGGATAGAATATTTCAGTTTCAAGATACATTTAGAATCATGTTTATAATAGCTATT
TTTCTTGTTGATATGATGAGACACCCCAAAAACAATATAAGGCTCCCAGTTTGAGGGTTTGGTT
CATCATGGCAGCTGGTCACATCATAGCTGCAGTTAGCACATAGATGATCGCCAGTGCTCAAGTA
GCCTTCTTAGATTTTATACATTTTGAGGTGTCAGCCCATGAAATGTTTCTACTCACATTCAGGG
TGGGCCTTCCTACTTCAGTTAACTCTAGAAGCTCAGTCACAGACACACCCAGAAGATTTTCTCC
CCAGTGATAGATATTCCATCCTGTCAGGTTGACAATGCTGACCATCACAATGTTTTAATGGCTT
ATCACTCAACCAACTCTTACACCATCATAAAACCTCTTAACTCTCGGAAAAACAATAGGCTTGT
GCACCCAGTGATTGGGTACAGACCAATAGCATGGCAAACGACTTTCCACAGACTGGCAACCTCC
CGGCTTCTAGTAAATTACCCAGAGCCCTATCGTTCTGAAATACTGGATTATCTATTTAAGCCAA
ACTTCGGTGCCTCTCTGCATATTCTAAAAGTGGAAATAGGTGGCGATGGACAAACAACAGACGG
CACTGAACCCTCCCACATGCACTATGAGCTAGATGAGAATTATTTCCGAGGCTATGAGTGGTGG
CTAATGAAGGAAGCTAAGAAGAGGAACCCAAATATTATACTTATGGGGTTGCCATGGTCATTCC
CTGGATGGCTGGGCAAAGGCTTCAGTTGGCCTTATGTAAATCTTCAGCTGACTGCCTTCTATAT
TGTGAGATGGATTTTGGGTGCCAAGCATTATCATGACCTGGACATTGATTATATTGGGATATGG
AATGAAAGGCCGTTTGATGCCAACTATATAAAGGAATTAAGAAAAATGCTTGATTATGAAGGTC
TCCAGCGAGTGAGAATCATAGCAAGTGATAATCTCTGGGAGCCAATTTCCTCTTCTGTGCTGCT
TGACCAGGAGCTCTGGAAGGTGGTTGATGTTATAGGAGCTCATTATCCCGGAACCTACACAGTC
TGGAATGCAAAGATGTCAGGGAAGAAGCTTTGGTCGTCGGAAGACTTTAGCACTGTCAACAGTA
ATGTTGGCGCAGGCTGTTGGGGTCGCATATTGAACCAGAATTACATCAATGGCAATATGACCGC
CACAATTGCTTGGAATTTGGTGGCTAGTTACTATGAAGAATTGCCCTATGGACGAAGTGGATTG
ATGACAGCCCAGGAGCCGTGGAGTGGACATTATGTAGTAGCATCTCCTATCTGGGTATCAGCTC
ATACAACTCAATTTACTCAACCAGGCTGGTATTACCTGAAGACAGTTGGCCATCTAGAGAAAGG
AGGAAGCTATGTAGCTCTGACTGATGGCTTGGGGAATTTCACCATCATCGTTGAAACTATGAGT
CGTCAACATTCTATGTGTATACGGCCATATCTACCGTATTATAATGTCTCACGTCAGCTGGCCA
CCTTCATTCTAAAGGGGTCTTTGAAAGAAATACAAGAGCTGCAGGTGTGGTACACCAAGCTTGG
AACAACACCAGAGAAACTTCATTTTAAACAACTGGAAACTCTATGGCTCCTTGACGGCAGCGGC
AGTTTCTCACTGGAACTGGAGGAGGATGAGATGTTCACACTCACCACTCTGACCACAGGGCACA
AAGGCAGCTACCGTCCCCCTCCCAAGTCACAGCCCTTCCCAACCAGCTATAAGGATGATTTCAA
CGTTGAGTACCCATTATTTAGTGAAGCTCCGAATTTTGCTGATCAGACCGGCGTGTTCGAGTAC
TACACGAATAACGAAGACCTTGAGCATCGCTTCACACTGCGCCAAGTTCTCAACCAACGACCTA
TTACCTGGGCCGCGGATGCCTCCAGCACGATCAGTGTCATAGGCGATCACCACTGGAGCAACAT
GACTGTGCAGTGTGATGTTTACATAGAGACTCCTCGGACTGGCGGTGTGTTCATTGCTGGAAGA
GTGAATAAAGGTGGTATCTTGATCAGAACTGCTTCAGGAGTTTTCTTCTGGATTTTTGCAAATG
GCTCTTACAGAGTTACAGCCGACCTGGGTGGGTGGATAACATATGCTTCAGGACATGCTGACGT
TACAGCAAAGCGATGGTATACACTCACCTTAGGCATTAAGGGTTATCTCGCCTCTGGTATGTTG
AACGGCAAGATCCTGTGGGAAAATGTGCCCGTGAAATACCCAGGGCATGGCTGGGCTGCGATCG
GAACGCATACCTTCGAGTTTGCGCAGTTTGACAACTTTCATGTGGAAGCTGCTCGCTAATATTC
ACAGGCCGTCAAGACATGATTTGGATTTTCTGTTTTTGATTTTGGTTCAGAGCTGGTTCTCATT
TTGATGGATCTGTATATCCTTTGAGGCTCACAATGAGGAGTAAATAGGGGAAATGGTGCACTTT
TGCTGGATCCCGTGAAAGATTTATTTAGAGCTAATTACACAGGGGATGCAGATAGTCTTTGGCA
CTGTCTGTGGCGGCCCTTACGGCCCACTGTTGGTCAGTCCCATCTTTCAGGAGTGCTTTGAGTG
GTTCTGGCCTTGTAGCCTTGGCACTGATACCGAGGTAGCTCACCCTAAGTTGTTTGTAAATGCT
CATGCAGATGGCTGGGACCACAGGGGTGTTTTTGTGAGCTTGGACCATGCCTTAGTCGAGGCTT
CCTTAGAAGATGCTGATGCTTAAGAAGATACCAATGAGCACTTCCATGAATACTTGAACTTTCA
GTTCTCTCTCCCTCACCCCATCCCTCTCTCCTTTCCCCTCTCTCCTCTATCACTGTCTCCTCCC
TGCTCCAGGATGATACTTTTGGAATTGCACAAATGATGATGGGATGATTTGAAAAGTAATAAAC
TAATACCAAAGCCATTTTTGCACTAATAAAACACAACCAGATTAATTGGGTTGTTTGTACTTTA
AAACTCTCTTACTTCCAACTTTTAACCCTCTTGAGAACATTTCCCATGTTGCAGGAAGTCTAGC
AGCTTCCCTGTACGATTCTTGTGCCTTTTGCAGTTCGTCCTCACAAGGGGCTCTGGACACAGCC
CAGCACCAGCGAATGCCTTCATCTATCTACGCGTGGCAGGAGGGGCCACCGGGGCTTTAACTAG
CTCAGAGTTGGATCATCTCCTTGAGAGTTTGGATAGATGCAATTGTTATATCCCCAATTTATAT
TTACATGTTGGCAAGCATGTTTCTCATTAGTATGATTATACTAATAATATCCATTTAACATTAA
TGTAACTCTTAGACACCAATGAATTTTCCATGTGGGTAAAGTGAATTCTGGAATTTCTTGTAAG
GAAAAATTACTCACTGAATTAACTCTACTCCCTGGGAATTTGTGCTGCTCTAACATGGGTAGAT
AAACTGTGAGGTCTGTATTACTTTTGAAAACTTGAAACCAAGGTTAGATGATTTACTATTTAAA
TCTTTGAGTATTTTTGAAAAGTAGCAAAACAGGTACAATTTATACATTTGAATGTTTCCATTTT
AAATGTATAGTTTGGTAAATGTAAACATTCCCTGGTAACCCACACTCCAGTGAAGCTATTGACG
ATTTCCATCCCTCCAGAAAGTTCTGTTACACTGTACAACAGTCTTCATCACTCCTCTTTGCAAG
CAGCAGTGACATCTCTGTTGCTAAAAATAAAAATGTTTGTTTTGAAAGTGAGAGGATATGCTGT
GTACTCTTCTAAGTGGATGTTTCTGTCAGCGCAGTGCTGTAGGATTTGTCCAGAGTGTAAGGTT
TTGCCAATGAGGTACATTCCTCCTTATTTTTGAAGGGAACATTGAATGGATGTACCACAATTTT
GCTTTCCCATCTCTTGTTTTTATGAGATTAAAAATAAAACTCATTAAGGGCATTAACATACAAA

hide sequence

RefSeq Acc Id:

XM_017594164 ⟹ XP_017449653

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	6	117,452,888 - 117,515,558 (-)	NCBI
Rnor_6.0	6	122,177,195 - 122,238,228 (-)	NCBI

Sequence:

show sequence

TTCTAGTTTTACCTAGTTTACGCAATTTTAAGTTATTAAAATAATTTTATAAGCTGGTGTGATG
GAGTAAGCCTTTGATACCAACACTCAGGAGGCAGAGGCTGATGGATCTGCCTCTGAGTTTGAAG
ACAGACTGGTATACTAGCCAGTTCTAGGCTAGCCAAGTGCTACACAATGGAACTCTAAAGACAC
TTAAGAACATAGAACAAGAAATTCATGTTCATTCTTAAAGGTTTATTTTAACTGTGTGTGTGTG
TGTTTGTGTGGTGTGTGTGTGGTGGTGGTGGGAATGTTTGTTTAGGTGAGTGCAGGTAGCTATA
GAAACCAGAAGCAGGTCACTGGGAGTTGCCATCTCTCCAGCCCCCAGAGCAGGCAACCTCCCGG
CTTCTAGTAAATTACCCAGAGCCCTATCGTTCTGAAATACTGGATTATCTATTTAAGCCAAACT
TCGGTGCCTCTCTGCATATTCTAAAAGTGGAAATAGGTGGCGATGGACAAACAACAGACGGCAC
TGAACCCTCCCACATGCACTATGAGCTAGATGAGAATTATTTCCGAGGCTATGAGTGGTGGCTA
ATGAAGGAAGCTAAGAAGAGGAACCCAAATATTATACTTATGGGGTTGCCATGGTCATTCCCTG
GATGGCTGGGCAAAGGCTTCAGTTGGCCTTATGTAAATCTTCAGCTGACTGCCTTCTATATTGT
GAGATGGATTTTGGGTGCCAAGCATTATCATGACCTGGACATTGATTATATTGGGATATGGAAT
GAAAGGCCGTTTGATGCCAACTATATAAAGGAATTAAGAAAAATGCTTGATTATGAAGGTCTCC
AGCGAGTGAGAATCATAGCAAGTGATAATCTCTGGGAGCCAATTTCCTCTTCTGTGCTGCTTGA
CCAGGAGCTCTGGAAGGTGGTTGATGTTATAGGAGCTCATTATCCCGGAACCTACACAGTCTGG
AATGCAAAGATGTCAGGGAAGAAGCTTTGGTCGTCGGAAGACTTTAGCACTGTCAACAGTAATG
TTGGCGCAGGCTGTTGGGGTCGCATATTGAACCAGAATTACATCAATGGCAATATGACCGCCAC
AATTGCTTGGAATTTGGTGGCTAGTTACTATGAAGAATTGCCCTATGGACGAAGTGGATTGATG
ACAGCCCAGGAGCCGTGGAGTGGACATTATGTAGTAGCATCTCCTATCTGGGTATCAGCTCATA
CAACTCAATTTACTCAACCAGGCTGGTATTACCTGAAGACAGTTGGCCATCTAGAGAAAGGAGG
AAGCTATGTAGCTCTGACTGATGGCTTGGGGAATTTCACCATCATCGTTGAAACTATGAGTCGT
CAACATTCTATGTGTATACGGCCATATCTACCGTATTATAATGTCTCACGTCAGCTGGCCACCT
TCATTCTAAAGGGGTCTTTGAAAGAAATACAAGAGCTGCAGGTGTGGTACACCAAGCTTGGAAC
AACACCAGAGAAACTTCATTTTAAACAACTGGAAACTCTATGGCTCCTTGACGGCAGCGGCAGT
TTCTCACTGGAACTGGAGGAGGATGAGATGTTCACACTCACCACTCTGACCACAGGGCACAAAG
GCAGCTACCGTCCCCCTCCCAAGTCACAGCCCTTCCCAACCAGCTATAAGGATGATTTCAACGT
TGAGTACCCATTATTTAGTGAAGCTCCGAATTTTGCTGATCAGACCGGCGTGTTCGAGTACTAC
ACGAATAACGAAGACCTTGAGCATCGCTTCACACTGCGCCAAGTTCTCAACCAACGACCTATTA
CCTGGGCCGCGGATGCCTCCAGCACGATCAGTGTCATAGGCGATCACCACTGGAGCAACATGAC
TGTGCAGTGTGATGTTTACATAGAGACTCCTCGGACTGGCGGTGTGTTCATTGCTGGAAGAGTG
AATAAAGGTGGTATCTTGATCAGAACTGCTTCAGGAGTTTTCTTCTGGATTTTTGCAAATGGCT
CTTACAGAGTTACAGCCGACCTGGGTGGGTGGATAACATATGCTTCAGGACATGCTGACGTTAC
AGCAAAGCGATGGTATACACTCACCTTAGGCATTAAGGGTTATCTCGCCTCTGGTATGTTGAAC
GGCAAGATCCTGTGGGAAAATGTGCCCGTGAAATACCCAGGGCATGGCTGGGCTGCGATCGGAA
CGCATACCTTCGAGTTTGCGCAGTTTGACAACTTTCATGTGGAAGCTGCTCGCTAATATTCACA
GGCCGTCAAGACATGATTTGGATTTTCTGTTTTTGATTTTGGTTCAGAGCTGGTTCTCATTTTG
ATGGATCTGTATATCCTTTGAGGCTCACAATGAGGAGTAAATAGGGGAAATGGTGCACTTTTGC
TGGATCCCGTGAAAGATTTATTTAGAGCTAATTACACAGGGGATGCAGATAGTCTTTGGCACTG
TCTGTGGCGGCCCTTACGGCCCACTGTTGGTCAGTCCCATCTTTCAGGAGTGCTTTGAGTGGTT
CTGGCCTTGTAGCCTTGGCACTGATACCGAGGTAGCTCACCCTAAGTTGTTTGTAAATGCTCAT
GCAGATGGCTGGGACCACAGGGGTGTTTTTGTGAGCTTGGACCATGCCTTAGTCGAGGCTTCCT
TAGAAGATGCTGATGCTTAAGAAGATACCAATGAGCACTTCCATGAATACTTGAACTTTCAGTT
CTCTCTCCCTCACCCCATCCCTCTCTCCTTTCCCCTCTCTCCTCTATCACTGTCTCCTCCCTGC
TCCAGGATGATACTTTTGGAATTGCACAAATGATGATGGGATGATTTGAAAAGTAATAAACTAA
TACCAAAGCCATTTTTGCACTAATAAAACACAACCAGATTAATTGGGTTGTTTGTACTTTAAAA
CTCTCTTACTTCCAACTTTTAACCCTCTTGAGAACATTTCCCATGTTGCAGGAAGTCTAGCAGC
TTCCCTGTACGATTCTTGTGCCTTTTGCAGTTCGTCCTCACAAGGGGCTCTGGACACAGCCCAG
CACCAGCGAATGCCTTCATCTATCTACGCGTGGCAGGAGGGGCCACCGGGGCTTTAACTAGCTC
AGAGTTGGATCATCTCCTTGAGAGTTTGGATAGATGCAATTGTTATATCCCCAATTTATATTTA
CATGTTGGCAAGCATGTTTCTCATTAGTATGATTATACTAATAATATCCATTTAACATTAATGT
AACTCTTAGACACCAATGAATTTTCCATGTGGGTAAAGTGAATTCTGGAATTTCTTGTAAGGAA
AAATTACTCACTGAATTAACTCTACTCCCTGGGAATTTGTGCTGCTCTAACATGGGTAGATAAA
CTGTGAGGTCTGTATTACTTTTGAAAACTTGAAACCAAGGTTAGATGATTTACTATTTAAATCT
TTGAGTATTTTTGAAAAGTAGCAAAACAGGTACAATTTATACATTTGAATGTTTCCATTTTAAA
TGTATAGTTTGGTAAATGTAAACATTCCCTGGTAACCCACACTCCAGTGAAGCTATTGACGATT
TCCATCCCTCCAGAAAGTTCTGTTACACTGTACAACAGTCTTCATCACTCCTCTTTGCAAGCAG
CAGTGACATCTCTGTTGCTAAAAATAAAAATGTTTGTTTTGAAAGTGAGAGGATATGCTGTGTA
CTCTTCTAAGTGGATGTTTCTGTCAGCGCAGTGCTGTAGGATTTGTCCAGAGTGTAAGGTTTTG
CCAATGAGGTACATTCCTCCTTATTTTTGAAGGGAACATTGAATGGATGTACCACAATTTTGCT
TTCCCATCTCTTGTTTTTATGAGATTAAAAATAAAACTCATTAAGGGCATTAACATACAAA

hide sequence

RefSeq Acc Id:

XM_039112331 ⟹ XP_038968259

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	6	117,452,888 - 117,522,281 (-)	NCBI

RefSeq Acc Id:

XM_039112332 ⟹ XP_038968260

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	6	117,452,888 - 117,514,198 (-)	NCBI

RefSeq Acc Id:

XM_039112333 ⟹ XP_038968261

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	6	117,452,888 - 117,522,281 (-)	NCBI

RefSeq Acc Id:

XM_039112334 ⟹ XP_038968262

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	6	117,452,888 - 117,522,226 (-)	NCBI

RefSeq Acc Id:

XM_039112335 ⟹ XP_038968263

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	6	117,452,888 - 117,515,561 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001005888	(Get FASTA)	NCBI Sequence Viewer
	XP_008763021	(Get FASTA)	NCBI Sequence Viewer
	XP_017449653	(Get FASTA)	NCBI Sequence Viewer
	XP_038968259	(Get FASTA)	NCBI Sequence Viewer
	XP_038968260	(Get FASTA)	NCBI Sequence Viewer
	XP_038968261	(Get FASTA)	NCBI Sequence Viewer
	XP_038968262	(Get FASTA)	NCBI Sequence Viewer
	XP_038968263	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAR26418	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:	NP_001005888 ⟸ NM_001005888
- Peptide Label:	precursor
- UniProtKB:	A0A0G2QC23 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTAAAGSASRVAVPLLLCAMLAPSGAYELDDSDGLGLEFDGIGAVSGGGATSRLLVNYPEPYRS EILDYLFKPNFGASLHILKVEIGGDGQTTDGTEPSHMHYELDENYFRGYEWWLMKEAKKRNPNI ILMGLPWSFPGWLGKGFSWPYVNLQLTAFYIVRWILGAKHYHDLDIDYIGIWNERPFDANYIKE LRKMLDYEGLQRVRIIASDNLWEPISSSVLLDQELWKVVDVIGAHYPGTYTVWNAKMSGKKLWS SEDFSTVNSNVGAGCWGRILNQNYINGNMTATIAWNLVASYYEELPYGRSGLMTAQEPWSGHYV VASPIWVSAHTTQFTQPGWYYLKTVGHLEKGGSYVALTDGLGNFTIIVETMSRQHSMCIRPYLP YYNVSRQLATFILKGSLKEIQELQVWYTKLGTTPEKLHFKQLETLWLLDGSGSFSLELEEDEMF TLTTLTTGHKGSYRPPPKSQPFPTSYKDDFNVEYPLFSEAPNFADQTGVFEYYTNNEDLEHRFT LRQVLNQRPITWAADASSTISVIGDHHWSNMTVQCDVYIETPRTGGVFIAGRVNKGGILIRTAS GVFFWIFANGSYRVTADLGGWITYASGHADVTAKRWYTLTLGIKGYLASGMLNGKILWENVPVK YPGHGWAAIGTHTFEFAQFDNFHVEAAR hide sequence

RefSeq Acc Id:

XP_008763021 ⟸ XM_008764799

- Peptide Label:

isoform X1

- Sequence:

show sequence

MAYHSTNSYTIIKPLNSRKNNRLVHPVIGYRPIAWQTTFHRLATSRLLVNYPEPYRSEILDYLF
KPNFGASLHILKVEIGGDGQTTDGTEPSHMHYELDENYFRGYEWWLMKEAKKRNPNIILMGLPW
SFPGWLGKGFSWPYVNLQLTAFYIVRWILGAKHYHDLDIDYIGIWNERPFDANYIKELRKMLDY
EGLQRVRIIASDNLWEPISSSVLLDQELWKVVDVIGAHYPGTYTVWNAKMSGKKLWSSEDFSTV
NSNVGAGCWGRILNQNYINGNMTATIAWNLVASYYEELPYGRSGLMTAQEPWSGHYVVASPIWV
SAHTTQFTQPGWYYLKTVGHLEKGGSYVALTDGLGNFTIIVETMSRQHSMCIRPYLPYYNVSRQ
LATFILKGSLKEIQELQVWYTKLGTTPEKLHFKQLETLWLLDGSGSFSLELEEDEMFTLTTLTT
GHKGSYRPPPKSQPFPTSYKDDFNVEYPLFSEAPNFADQTGVFEYYTNNEDLEHRFTLRQVLNQ
RPITWAADASSTISVIGDHHWSNMTVQCDVYIETPRTGGVFIAGRVNKGGILIRTASGVFFWIF
ANGSYRVTADLGGWITYASGHADVTAKRWYTLTLGIKGYLASGMLNGKILWENVPVKYPGHGWA
AIGTHTFEFAQFDNFHVEAAR

hide sequence

RefSeq Acc Id:

XP_017449653 ⟸ XM_017594164

- Peptide Label:

isoform X2

- Sequence:

show sequence

MHYELDENYFRGYEWWLMKEAKKRNPNIILMGLPWSFPGWLGKGFSWPYVNLQLTAFYIVRWIL
GAKHYHDLDIDYIGIWNERPFDANYIKELRKMLDYEGLQRVRIIASDNLWEPISSSVLLDQELW
KVVDVIGAHYPGTYTVWNAKMSGKKLWSSEDFSTVNSNVGAGCWGRILNQNYINGNMTATIAWN
LVASYYEELPYGRSGLMTAQEPWSGHYVVASPIWVSAHTTQFTQPGWYYLKTVGHLEKGGSYVA
LTDGLGNFTIIVETMSRQHSMCIRPYLPYYNVSRQLATFILKGSLKEIQELQVWYTKLGTTPEK
LHFKQLETLWLLDGSGSFSLELEEDEMFTLTTLTTGHKGSYRPPPKSQPFPTSYKDDFNVEYPL
FSEAPNFADQTGVFEYYTNNEDLEHRFTLRQVLNQRPITWAADASSTISVIGDHHWSNMTVQCD
VYIETPRTGGVFIAGRVNKGGILIRTASGVFFWIFANGSYRVTADLGGWITYASGHADVTAKRW
YTLTLGIKGYLASGMLNGKILWENVPVKYPGHGWAAIGTHTFEFAQFDNFHVEAAR

hide sequence

RefSeq Acc Id:

ENSRNOP00000005015 ⟸ ENSRNOT00000005015

RefSeq Acc Id:	XP_038968259 ⟸ XM_039112331
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038968261 ⟸ XM_039112333
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038968262 ⟸ XM_039112334
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038968263 ⟸ XM_039112335
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038968260 ⟸ XM_039112332
- Peptide Label:	isoform X2

Protein Domains

Glyco_hydro_59M

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Strain Variation

Strain Sequence Variants (Rnor 6.0)

ACI/EurMcwi (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

ACI/EurMcwi (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

ACI/N (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BBDP/Wor (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

BN/SsN (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Buf/N (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

COP/CrCrl (MCW & UW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob) University of Wisconsin (Dr. James Shull)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Charles River Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)

F344/NCrl (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

F344/NRrrc (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

FHH/EurMcwi (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHH/EurMcwi (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FHL/EurMcwi (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHL/EurMcwi (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

GH/OmrMcwi (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

GK/Ox (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LE/Stm (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/Crl (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/NCrlBR (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LH/MavRrrc (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LL/MavRrrc (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LN/MavRrrc (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

M520/N (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

MHS/Gib (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MNS/Gib (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MR/N (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

SBH/Ygl (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBH/Ygl sequenced by MCW

SBH/Ygl (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SBN/Ygl (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBN/Ygl sequenced by MCW

SBN/Ygl (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/NHsd (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHRSP/Gcrc (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SR/JrHsd (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Harlan Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SR/JrHsd (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/Jr (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/JrHsdMcwi (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SS/JrHsdMcwi (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/Rij (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/Gcrc (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/N (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

WKY/NCrl (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/NHsd (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WN/N (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Damaging Variants

Assembly: Rnor_6.0

Chromosome	Start Pos	End Pos	Reference Nucleotide	Variant Nucleotide	Variant Type	Strain
6	122187947	122187948	C	T	snv	SBH/Ygl (MCW), FHH/EurMcwi (MCW), FHL/EurMcwi (MCW), SBN/Ygl (MCW), FHL/EurMcwi (RGD), SBN/Ygl (RGD), LH/MavRrrc (RGD), LN/MavRrrc (RGD), LL/MavRrrc (RGD), MNS/Gib (RGD), SBH/Ygl (RGD), FHH/EurMcwi (RGD)

Assembly: RGSC_v3.4

Chromosome	Start Pos	End Pos	Reference Nucleotide	Variant Nucleotide	Variant Type	Strain
6	122359151	122359152	A	G	snv	SS/JrHsdMcwi (MCW)
6	122416814	122416815	C	T	snv	SS/JrHsdMcwi (MCW)

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1359384	AgrOrtholog
Ensembl Genes	ENSRNOG00000003759	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000005015	ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000005015	ENTREZGENE, UniProtKB/TrEMBL
Gene3D-CATH	3.20.20.70	UniProtKB/TrEMBL
InterPro	Aldolase_TIM	UniProtKB/TrEMBL
	Glyco_hydro_59	UniProtKB/TrEMBL
	Glyco_hydro_59_dom	UniProtKB/TrEMBL
	Glycoside_hydrolase_SF	UniProtKB/TrEMBL
KEGG Report	rno:314360	UniProtKB/TrEMBL
NCBI Gene	314360	ENTREZGENE
PANTHER	Glyco_hydro_59	UniProtKB/TrEMBL
Pfam	Glyco_hydro_59	UniProtKB/TrEMBL
	Glyco_hydro_59M	UniProtKB/TrEMBL
PhenoGen	Galc	PhenoGen
PRINTS	GLHYDRLASE59	UniProtKB/TrEMBL
Superfamily-SCOP	Glyco_hydro_cat	UniProtKB/TrEMBL
UniProt	A0A0G2QC23	ENTREZGENE, UniProtKB/TrEMBL
	G3V6H1_RAT	UniProtKB/TrEMBL
UniProt Secondary	Q5YKG1	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2006-03-30	Galc	galactosylceramidase			Symbol and Name status set to approved	1299863	APPROVED
2005-07-29	Galc	galactosylceramidase			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

Imported Annotations - SMPDB

Imported Annotations - KEGG (archival)