Fbxo30 (F-box protein 30) - Rat Genome Database

Name: Fbxo30
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Fbxo30 (F-box protein 30) Rattus norvegicus

Analyze

Symbol:

Fbxo30

Name:

F-box protein 30

RGD ID:

1359367

Description:

Predicted to enable ubiquitin protein ligase activity and zinc ion binding activity. Predicted to be involved in protein ubiquitination. Orthologous to human FBXO30 (F-box protein 30); INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

F-box only protein 30; MGC94907

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	FBXO30 (F-box protein 30)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Fbxo30 (F-box protein 30)	HGNC	Treefam, EggNOG, OrthoMCL, NCBI, OMA, HomoloGene, Inparanoid, Panther, PhylomeDB, OrthoDB, Ensembl
Chinchilla lanigera (long-tailed chinchilla):	Fbxo30 (F-box protein 30)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	FBXO30 (F-box protein 30)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	FBXO30 (F-box protein 30)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Fbxo30 (F-box protein 30)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	FBXO30 (F-box protein 30)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	FBXO30 (F-box protein 30)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Fbxo30 (F-box protein 30)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	FBXO30 (F-box protein 30)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Fbxo30 (F-box protein 30)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	fbxo30a (F-box protein 30a)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	C10E2.2	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	1	5,655,341 - 5,671,558 (+)	NCBI	mRatBN7.2
mRatBN7.2 Ensembl	1	5,655,339 - 5,672,441 (+)	Ensembl
Rnor_6.0	1	5,366,119 - 5,389,774 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	5,366,379 - 5,388,069 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	7,018,177 - 7,041,768 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	5,975,207 - 5,991,214 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	1	5,975,206 - 5,991,212 (+)	NCBI
Celera	1	4,178,283 - 4,194,161 (+)	NCBI		Celera
Cytogenetic Map	1	p13	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

2,4-dinitrotoluene (EXP)

2-butoxyethanol (ISO)

2-hydroxyethyl methacrylate (ISO)

3-methyl-3H-imidazo[4,5-f]quinolin-2-amine (ISO)

4-hydroxynon-2-enal (ISO)

acrylamide (ISO)

aflatoxin B1 (ISO)

aristolochic acid (ISO)

arsenous acid (ISO)

azathioprine (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bromobenzene (EXP)

cadmium atom (ISO)

cadmium dichloride (ISO)

carbon nanotube (ISO)

chlorambucil (ISO)

chloroacetaldehyde (ISO)

chlorpyrifos (ISO)

cidofovir anhydrous (ISO)

cisplatin (ISO)

clodronic acid (ISO)

cobalt dichloride (EXP,ISO)

copper atom (ISO)

copper(0) (ISO)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

diarsenic trioxide (ISO)

diazinon (ISO)

diethylstilbestrol (ISO)

dioxygen (ISO)

doxorubicin (ISO)

endosulfan (EXP)

enzyme inhibitor (ISO)

Ethyl acrylate (ISO)

fenofibrate (EXP,ISO)

flutamide (EXP)

formaldehyde (ISO)

fulvestrant (ISO)

hydrogen peroxide (ISO)

ifosfamide (ISO)

indole-3-methanol (EXP)

leflunomide (ISO)

menadione (ISO)

metformin (EXP)

nickel dichloride (EXP)

oxaliplatin (EXP)

para-Cresidine (ISO)

paracetamol (EXP,ISO)

pentachlorophenol (ISO)

perfluorooctanoic acid (EXP)

phenytoin (EXP)

phorone (EXP)

pirinixic acid (EXP,ISO)

propiconazole (ISO)

quercetin (ISO)

resorcinol (ISO)

resveratrol (ISO)

silver atom (ISO)

silver(0) (ISO)

sodium arsenite (ISO)

Soman (EXP)

tert-butyl hydroperoxide (ISO)

tetrachloromethane (EXP,ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

topotecan (EXP)

Tributyltin oxide (ISO)

triphenyl phosphate (EXP)

triptonide (ISO)

troglitazone (ISO)

urethane (ISO)

valproic acid (ISO)

vinclozolin (EXP)

zinc atom (ISO)

zinc(0) (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

protein ubiquitination (IEA)

Molecular Function

ubiquitin protein ligase activity (IEA)

zinc ion binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	null	JRS Domain-based curation
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	GOA pipeline	RGD automated data pipeline
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
5.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:15489334	PMID:19028597

Genomics

Comparative Map Data

Fbxo30
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	1	5,655,341 - 5,671,558 (+)	NCBI	mRatBN7.2
mRatBN7.2 Ensembl	1	5,655,339 - 5,672,441 (+)	Ensembl
Rnor_6.0	1	5,366,119 - 5,389,774 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	5,366,379 - 5,388,069 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	7,018,177 - 7,041,768 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	5,975,207 - 5,991,214 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	1	5,975,206 - 5,991,212 (+)	NCBI
Celera	1	4,178,283 - 4,194,161 (+)	NCBI		Celera
Cytogenetic Map	1	p13	NCBI

FBXO30
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	6	145,793,502 - 145,814,795 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	6	145,793,502 - 145,814,795 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	6	146,114,638 - 146,135,931 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	6	146,160,964 - 146,177,614 (-)	NCBI	NCBI36		hg18	NCBI36
Build 34	6	146,160,965 - 146,177,614	NCBI
Celera	6	146,859,626 - 146,876,275 (-)	NCBI
Cytogenetic Map	6	q24.3	NCBI
HuRef	6	143,682,463 - 143,699,113 (-)	NCBI		HuRef
CHM1_1	6	146,382,477 - 146,399,127 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	6	146,986,553 - 147,007,846 (-)	NCBI

Fbxo30
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	10	11,157,009 - 11,181,494 (+)	NCBI	GRCm39		mm39
GRCm39 Ensembl	10	11,157,074 - 11,173,796 (+)	Ensembl
GRCm38	10	11,281,330 - 11,305,750 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	10	11,281,330 - 11,298,052 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	10	11,001,128 - 11,017,767 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	10	10,971,564 - 10,987,155 (+)	NCBI			mm8
Celera	10	11,170,215 - 11,186,876 (+)	NCBI		Celera
Cytogenetic Map	10	A1	NCBI

Fbxo30
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955436	14,837,162 - 14,842,520 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955436	14,837,162 - 14,842,615 (+)	NCBI	ChiLan1.0	ChiLan1.0

FBXO30
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	6	148,299,673 - 148,316,921 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	6	148,299,673 - 148,307,939 (-)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	6	143,580,146 - 143,601,429 (-)	NCBI	Mhudiblu_PPA_v0		panPan3

FBXO30
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	37,008,520 - 37,025,564 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	1	37,007,912 - 37,025,570 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	37,896,041 - 37,917,515 (-)	NCBI
ROS_Cfam_1.0	1	37,179,111 - 37,200,573 (-)	NCBI
ROS_Cfam_1.0 Ensembl	1	37,182,903 - 37,200,609 (-)	Ensembl
UMICH_Zoey_3.1	1	37,057,684 - 37,079,148 (-)	NCBI
UNSW_CanFamBas_1.0	1	36,922,464 - 36,943,897 (-)	NCBI
UU_Cfam_GSD_1.0	1	37,245,831 - 37,267,311 (-)	NCBI

Fbxo30
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	131,951,240 - 131,965,698 (-)	NCBI
SpeTri2.0	NW_004936625	669,859 - 684,312 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

FBXO30
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	19,764,591 - 19,777,618 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	19,756,232 - 19,777,621 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	21,999,978 - 22,019,388 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

FBXO30
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	13	26,031,806 - 26,048,390 (+)	NCBI	ChlSab1.1		chlSab2
ChlSab1.1 Ensembl	13	26,031,804 - 26,046,419 (+)	Ensembl	ChlSab1.1		chlSab2
Vero_WHO_p1.0	NW_023666040	201,994,603 - 202,011,182 (+)	NCBI	Vero_WHO_p1.0

Fbxo30
(Heterocephalus glaber - naked mole-rat)

Naked Mole-rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624753	8,636,088 - 8,653,855 (+)	Ensembl	HetGla_female_1.0		hetGla2
HetGla 1.0	NW_004624753	8,635,680 - 8,654,642 (+)	NCBI	HetGla_female_1.0		hetGla2

Position Markers

RH142547

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	5,665,544 - 5,665,829 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	5,382,161 - 5,382,445	NCBI	Rnor6.0
Rnor_5.0	1	7,033,934 - 7,034,218	UniSTS	Rnor5.0
RGSC_v3.4	1	5,985,301 - 5,985,585	UniSTS	RGSC3.4
Celera	1	4,188,251 - 4,188,535	UniSTS
RH 3.4 Map	1	106.5	UniSTS
Cytogenetic Map	1	p13	UniSTS

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1354647	Despr8	Despair related QTL 8		0.0000341	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	1	1	24744506	Rat
2298546	Neuinf4	Neuroinflammation QTL 4	5.1		nervous system integrity trait (VT:0010566)	spinal cord RT1-B protein level (CMO:0002132)	1	1	28736750	Rat
2313053	Bss51	Bone structure and strength QTL 51	3.8	0.0001	tibia length (VT:0004357)	tibia length (CMO:0000450)	1	1	32356093	Rat
2313070	Bss52	Bone structure and strength QTL 52	4.4	0.0001	body length (VT:0001256)	body length (CMO:0000013)	1	1	32356093	Rat
2313090	Bmd69	Bone mineral density QTL 69	4.4	0.0001	tibia mineral mass (VT:1000283)	cortical volumetric bone mineral density (CMO:0001730)	1	1	32356093	Rat
738020	Pia8	Pristane induced arthritis QTL 8	4.7		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	1	1	65833076	Rat
1578650	Bmd6	Bone mineral density QTL 6	12.2		femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	1	509108	43284926	Rat
1578651	Bmd7	Bone mineral density QTL 7	14.2		femur mineral mass (VT:0010011)	cortical volumetric bone mineral density (CMO:0001730)	1	509108	43284926	Rat
1578669	Bss9	Bone structure and strength QTL 9	6.3		femur morphology trait (VT:0000559)	bone trabecular cross-sectional area (CMO:0002311)	1	509108	43284926	Rat
1554320	Bmd1	Bone mineral density QTL 1	12.2	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	1	509108	86060548	Rat
1600360	Mcs16	Mammary carcinoma susceptibility QTL 16	2.4		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	1	2244390	43433040	Rat
1300170	Rf6	Renal function QTL 6	3.14		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	1	4162807	11481482	Rat
7421626	Bp360	Blood pressure QTL 360		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	4393289	49393289	Rat

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	100
Count of miRNA genes:	69
Interacting mature miRNAs:	94
Transcripts:	ENSRNOT00000019918
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium		40	38	22	18	22	8	8	72	28	41	11	8
Low	3	3	19	19	1	19		3	2	7
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001007690	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006227640	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC083823	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473994	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000008	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000019918 ⟹ ENSRNOP00000019918

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	5,655,339 - 5,672,441 (+)	Ensembl
Rnor_6.0 Ensembl	1	5,366,379 - 5,388,069 (+)	Ensembl

RefSeq Acc Id:

NM_001007690 ⟹ NP_001007691

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	1	5,655,575 - 5,671,455 (+)	NCBI
Rnor_6.0	1	5,366,379 - 5,388,071 (+)	NCBI
Rnor_5.0	1	7,018,177 - 7,041,768 (+)	NCBI
RGSC_v3.4	1	5,975,207 - 5,991,214 (+)	RGD
Celera	1	4,178,283 - 4,194,161 (+)	RGD

Sequence:

show sequence

CGCGAGCCCAGGGGGCGGCGGGGCCGGTGGAGTCGGCGCAGCTCGGAGGCTCCCGTCCAGCTCG
CCCGGGCCTCGAATCGCGCCCGGCTGCCTGTGTGGCCCGCCCTTGAGGCTCCCGGCAAATGGCG
CCCCGACCCCGGGGGACGCCGACCCGGAGTTGGACTGGCCATTATGGAGGAAGAGGTACAGCAG
CACTCACACTGTGTGAACTGTGTCAGTAGAAGGTGTATGACCAGACCAGAGCCTGGCGTTTCCT
GTGACTTGATTGGTTGTCCATTGGTTTGTGGAGCAGTCTTCCATTCTTGTAAAGCTGATGAGCA
TCGACTCTTGTGTCCTTTTGAACGAGTACCCTGCTTAAATAGTAACTTTGGGTGTCCATTTACC
CTGGCACGAAATAAAGTTGCTGAACATCTCGAAATGTGTCCTGCAAGTGTGGTGTGCTGCACTA
TGGAGTGGAACCGATGGCCCGTTAGTTATTCAGACCGCAAGTCATATGAAAGTCTAAGCAGAGA
TGCTGATGAAGTGTCACAGTTAGACATGGCTTTGGCCCTTCAAGATCAAAGAATGCTTTTGGAA
TCTCTCAAAGTAGCCACCATGATGTCAAAAGCAACTGGTAAAATATCTAAACCTAGAGAACAGA
TCTCAGTGAACTCAAGTGTTCAGGAAGTACCACGTGCTAATGGGTTGGTGTCCGCTGACGAAGA
GTCATATGGTGCACTTTATGAAGCTACTGTAGAAACAACCAGAAGCTTGGCTGCTGCTTTAGAT
ATCCTAAACTCTGCCACAAGAGATATTGGCATGTTAAATACAAGTCTCCAAGGTACCACAAATG
AAATGGATGAGGAGAGTAACAGAGAAAGCTCCCAGGACAGAAACGCGAAAGACCAGGATCACCT
TGACGAGGGTGAGATAGGGGCAGTAGGTGGAATTGATTATACTGGCACAAGTCAGAATGCTCAG
GCTGAACAAAATGGCTCAAGTGATTTATTATGCAACTTAAATACAAGTTCTTACGATACTTCTG
CTCTTTGTAATGGCTTTCCTTTGGAAAAGATGTGTACACAGGTCAAAGACCAGGATCAAAATTT
TCATGGTGATTCCACAGAAAGTAACATAACAAATGGAGACTGTGTGGAAGCTGATGGTACTTCA
GAACCTCCCAGTTCACTTTTAGTAGCAGAACAACTTAAGGAAGGAAGTGCTTTGCCAGATAGTA
CCTATCAACATATCCTCATGCCGGACGAAGATGATGATGAGGACTTGTGTTGGAAAAAAGACTT
AGGGGACTCGAAAGATGTTAATGGTTCACCTTTGAGTCACGCGACTTCATTCAAGTTTCTTTCT
AATTCATGGTATATACCAAAGGAAGACAAAGCAGTCGATACTTCAGATTTAGAGGTTGCAGAAG
ATCCCATGGGCCTCCAAGGAATAGATCTGATTACAGCAGCATTACTGTTTTGTCTGGGAGATTC
TCCAGGTGGGAGGGGCATATCTGATAGCCGCATGGTTGATGTTTATCACGTTGACTTTGGGACA
CAGACTTTTTCACTTCCATCTGCAATATTAGCTACAAATACAATGGTTGGAGAAATAGCTTCAG
CTTCAGCTTGTGATCATGCCAATCCACAGCTTTCAAATCCAAGCCCTTTTCAGACACTTGGGCT
GGACTTAGTTTTGGAATGTGTTGCTAGGTACCAGCCTAAGCAGCGTTCAATGTTTACCTTTGTA
TGCGGACAGTTATTTAGAAGAAAAGAATTTTCTTCCCATTTTAAGAACGTGCATGGTGACATTC
ACGCTGGACTCAATGGATGGATGGAGCAGAGGTGTCCTTTAGCTTATTATGGTTGTACGTATTC
TCAGCGTAGATTTTGCCCTTCAACACAAGGAGCAAAGATCATACATGACCGCCATTTAAGGTCA
TTTGGAGTTCAGCCATGTGTATCTACAGCATTAGAAGAGCCTTCTAGAAACTGTGTGTTGGGAT
TACGTAGTGACCATCTAAGTAGTCTCCCTTTTGAGGTACTCCAACATATTGCAGGCTTCCTTGA
TGGCTTCAGTTTATGCCAGCTTGCATGTGTATCCAGGCTAATGAGGGACATTTGTGGCAGTTTA
CTTCAGTCTCGTGGAATGGTAATATTGCAGTGGGGGAAAAAGAAGTATCCAGAAGGAAATTCAT
CCTGGCAGATAAAAGAAAAGGTGTGGCGATTCAGTACTGCATTTTGTTCTGTTAATGACTGGAA
GTTTGCAGACATCCTGAGCATGGCTGACCACTTGAAGAAATGCAGTTACAATGTTATAGAGAAG
CGGGAGGAAGCAATCCCATTGCCATGTATGTGCGTGACTCGAGAACTCACAAAAGAAGGACGTT
CCCTGCGCTCAGTTTTAAAGCCCGTACTGTAAAACTGTGACTTCACTTGCACAGCATGCAAGCA
GCTGGCATCAGTTCTTTGTAATATGTGACACTTTATTAGTGCATTAAAGACTACAACTAGCCAA
ACTTATTGTCACTATGTATGTACTGTTTTGCAGTGACATATATTTTTATAATGTACTATTAGGT
GGAAAAATGTTGCCTTAATATTTGAAATGTGTGAAATTGTTGGAACGTGATAGGCAGGATGAAT
AGTCTAATCTTTTTTGCATAATGTTAGTATTAATGGTGTGCACGTTTAAATTCTAAAATTTTTG
CTTCTCAAACACAAAAAGATCTTGACCAAAAAATTCTTTGTTTTCTGTGGATTGAAGCCCATGC
TATCCAAAAGCAAAACTTTGATTCAAATTTTTTGTTGCATAGATTTTTCACACAGTACATTCAG
TTGTTGAAACACTGCCATAAGATTATTATGAGGTTTTCCTGGCACTTTTATAATTATTGATCAC
AAGTGAAATACAGTACTCACATAAAGGCACAATAATGACTTCATGTTTTAAAACAACTCACAAA
GATACTTTATTTTCTGTTCTTACAACTCGTCTGCAAAAAAATGGTCACACAGTTCTTTTTTTCA
TTAAATACCATATCTGAAGAGTCATGGCACAGTGTATTATATGACAGATTAAAGTTAAAAGAAA
GCAAGTCTGTGAATTTAACTTGACATTTTTCATGGTATTTCATATTTTCTAGGTATCTAATGTT
TGAAAAGAAAATATACCTCACTTATAAGTTTGAATTTGGAATATTGTTTGAATAAACTTCAAAT
ATTCAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006227640 ⟹ XP_006227702

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	1	5,655,341 - 5,671,558 (+)	NCBI
Rnor_6.0	1	5,366,119 - 5,389,774 (+)	NCBI
Rnor_5.0	1	7,018,177 - 7,041,768 (+)	NCBI

Sequence:

show sequence

GCGAGGAGGGCGGTGGCGGTTGGAGGCCGAGGAGAAAAGGCGGCGGTCCGGCCGGGGCAGACAC
GCTGAGGATTGGGACGGGACCGGCTCTGTACGTGGTCCGGTCCGGTCCGGTCCGGTGCGGGGAG
GCTGCAGAGCGGCCGGACGCGACGGACAGGGCTGCCGGGGTTTGAGTGGCGCTTCGGCCCGCGT
GGGCTGAGTTGGACTGGCCATTATGGAGGAAGAGGTACAGCAGCACTCACACTGTGTGAACTGT
GTCAGTAGAAGGTGTATGACCAGACCAGAGCCTGGCGTTTCCTGTGACTTGATTGGTTGTCCAT
TGGTTTGTGGAGCAGTCTTCCATTCTTGTAAAGCTGATGAGCATCGACTCTTGTGTCCTTTTGA
ACGAGTACCCTGCTTAAATAGTAACTTTGGGTGTCCATTTACCCTGGCACGAAATAAAGTTGCT
GAACATCTCGAAATGTGTCCTGCAAGTGTGGTGTGCTGCACTATGGAGTGGAACCGATGGCCCG
TTAGTTATTCAGACCGCAAGTCATATGAAAGTCTAAGCAGAGATGCTGATGAAGTGTCACAGTT
AGACATGGCTTTGGCCCTTCAAGATCAAAGAATGCTTTTGGAATCTCTCAAAGTAGCCACCATG
ATGTCAAAAGCAACTGGTAAAATATCTAAACCTAGAGAACAGATCTCAGTGAACTCAAGTGTTC
AGGAAGTACCACGTGCTAATGGGTTGGTGTCCGCTGACGAAGAGTCATATGGTGCACTTTATGA
AGCTACTGTAGAAACAACCAGAAGCTTGGCTGCTGCTTTAGATATCCTAAACTCTGCCACAAGA
GATATTGGCATGTTAAATACAAGTCTCCAAGGTACCACAAATGAAATGGATGAGGAGAGTAACA
GAGAAAGCTCCCAGGACAGAAACGCGAAAGACCAGGATCACCTTGACGAGGGTGAGATAGGGGC
AGTAGGTGGAATTGATTATACTGGCACAAGTCAGAATGCTCAGGCTGAACAAAATGGCTCAAGT
GATTTATTATGCAACTTAAATACAAGTTCTTACGATACTTCTGCTCTTTGTAATGGCTTTCCTT
TGGAAAAGATGTGTACACAGGTCAAAGACCAGGATCAAAATTTTCATGGTGATTCCACAGAAAG
TAACATAACAAATGGAGACTGTGTGGAAGCTGATGGTACTTCAGAACCTCCCAGTTCACTTTTA
GTAGCAGAACAACTTAAGGAAGGAAGTGCTTTGCCAGATAGTACCTATCAACATATCCTCATGC
CGGACGAAGATGATGATGAGGACTTGTGTTGGAAAAAAGACTTAGGGGACTCGAAAGATGTTAA
TGGTTCACCTTTGAGTCACGCGACTTCATTCAAGTTTCTTTCTAATTCATGGTATATACCAAAG
GAAGACAAAGCAGTCGATACTTCAGATTTAGAGGTTGCAGAAGATCCCATGGGCCTCCAAGGAA
TAGATCTGATTACAGCAGCATTACTGTTTTGTCTGGGAGATTCTCCAGGTGGGAGGGGCATATC
TGATAGCCGCATGGTTGATGTTTATCACGTTGACTTTGGGACACAGACTTTTTCACTTCCATCT
GCAATATTAGCTACAAATACAATGGTTGGAGAAATAGCTTCAGCTTCAGCTTGTGATCATGCCA
ATCCACAGCTTTCAAATCCAAGCCCTTTTCAGACACTTGGGCTGGACTTAGTTTTGGAATGTGT
TGCTAGGTACCAGCCTAAGCAGCGTTCAATGTTTACCTTTGTATGCGGACAGTTATTTAGAAGA
AAAGAATTTTCTTCCCATTTTAAGAACGTGCATGGTGACATTCACGCTGGACTCAATGGATGGA
TGGAGCAGAGGTGTCCTTTAGCTTATTATGGTTGTACGTATTCTCAGCGTAGATTTTGCCCTTC
AACACAAGGAGCAAAGATCATACATGACCGCCATTTAAGGTCATTTGGAGTTCAGCCATGTGTA
TCTACAGCATTAGAAGAGCCTTCTAGAAACTGTGTGTTGGGATTACGTAGTGACCATCTAAGTA
GTCTCCCTTTTGAGGTACTCCAACATATTGCAGGCTTCCTTGATGGCTTCAGTTTATGCCAGCT
TGCATGTGTATCCAGGCTAATGAGGGACATTTGTGGCAGTTTACTTCAGTCTCGTGGAATGGTA
ATATTGCAGTGGGGGAAAAAGAAGTATCCAGAAGGAAATTCATCCTGGCAGATAAAAGAAAAGG
TGTGGCGATTCAGTACTGCATTTTGTTCTGTTAATGACTGGAAGTTTGCAGACATCCTGAGCAT
GGCTGACCACTTGAAGAAATGCAGTTACAATGTTATAGAGAAGCGGGAGGAAGCAATCCCATTG
CCATGTATGTGCGTGACTCGAGAACTCACAAAAGAAGGACGTTCCCTGCGCTCAGTTTTAAAGC
CCGTACTGTAAAACTGTGACTTCACTTGCACAGCATGCAAGCAGCTGGCATCAGTTCTTTGTAA
TATGTGACACTTTATTAGTGCATTAAAGACTACAACTAGCCAAACTTATTGTCACTATGTATGT
ACTGTTTTGCAGTGACATATATTTTTATAATGTACTATTAGGTGGAAAAATGTTGCCTTAATAT
TTGAAATGTGTGAAATTGTTGGAACGTGATAGGCAGGATGAATAGTCTAATCTTTTTTGCATAA
TGTTAGTATTAATGGTGTGCACGTTTAAATTCTAAAATTTTTGCTTCTCAAACACAAAAAGATC
TTGACCAAAAAATTCTTTGTTTTCTGTGGATTGAAGCCCATGCTATCCAAAAGCAAAACTTTGA
TTCAAATTTTTTGTTGCATAGATTTTTCACACAGTACATTCAGTTGTTGAAACACTGCCATAAG
ATTATTATGAGGTTTTCCTGGCACTTTTATAATTATTGATCACAAGTGAAATACAGTACTCACA
TAAAGGCACAATAATGACTTCATGTTTTAAAACAACTCACAAAGATACTTTATTTTCTGTTCTT
ACAACTCGTCTGCAAAAAAATGGTCACACAGTTCTTTTTTTCATTAAATACCATATCTGAAGAG
TCATGGCACAGTGTATTATATGACAGATTAAAGTTAAAAGAAAGCAAGTCTGTGAATTTAACTT
GACATTTTTCATGGTATTTCATATTTTCTAGGTATCTAATGTTTGAAAAGAAAATATACCTCAC
TTATAAGTTTGAATTTGGAATATTGTTTGAATAAACTTCAAATATTCAGAATACAGAGGGTTTG
ACTTTTTGAGGGGCCTTAAAAATGTTATACTTTTGATGTTTATAAAACACTTCAAGACATTTAA
GACATTTAAAAATGTGAAACTTCAAAGTCTTTGTAAAATGATGTCAAGAAGAACTCTGTCTTGG
TTGATAATCTTTATGAAACATTTCCACAGTTTTGCTTCACATATTCTCAGAAAATAAGAGTTGT
GTCTTTCTGTAAACATCAAGTGTGATAATGAAATATTCAAAACTATAGGTTTCCAGTTGATTCA
TGCCATGTTTGTGTAATGTACGTATTTTTAAAAAACAAACATACTTTGTCAGTATTTAAAAGTA
AGTTCTGAAGACAGGGACATTAAGTGATTTGTTTAGATAAATTCTGGCTTTGGCAAGCTGAAAT
GGCTATTAATGTGAAAACTCAAGTGTATCTTTTCTTTCTACATTGTTTTGAGAGTACTTTGCAG
GTACTGTTTCAGATGTCCCGTATATGGTACTCAGTGTGGGAAGAGGTCTTCCTTGGGCATTATT
GATGAATTACCAATTGCTTGCAATTTGTCTTGGCCAAATGTAGCAGTAAAGATTAATCCCTTGT
TTTGCCTCACCTGTCAGTTAACAGAATTGATAATTTCAGTGCTTAGATTCCTTTTCAACTGTGA
GGCTGAATTGCATTTAAACACCACCACCACCTCCATTTTGTTTCTGCCGAAAGGTAGAAATAAG
AGTCAAATATGACAGGATATCACTTAGCTTTTTAAAACTTTTCTGAAGAATGTTTCTATAGTTG
GACAGCATAAGCAATTTTTTGTTCTATGTTTGTACTTTTAAAAATTCCTGATTTGTAAGTTTAA
ATCTATTTCCACATTGAGACATTTAACTTTTTATTTTGACCTTTTCTTTTTGACTGAATGAGAT
GGATATTTTAATAATAGCATATGTACAATGAAAACTTTCTACTTTTTTATTTTGTTCAAATAAA
TGTTTTTTTTAATGTATTCTGGGGCAAAAGACAATAGTCAAGCATTAGACATCTAGACATGACC
AAATGAGTCAAGCAGAATTGAGCTGTTTTTCTTAGCCTATTATTCATGCAGTCAGTTTTAGATG
CCCAGTTTTAGATGCTTACTAAAACTTTAAATTTACAATTATAGACATAGGAACAAAATGGAAT
TTTACATGAATTTCTGGATAGGAAAACATAATTCATTCTTGGTAGTTAGTATTTAAATGCTGTG
GATATCACTGCCATTTTAGCCCTCATTCCTTCATGTGAAAGCAACTTGGGGAGACAGGGGAATT
GAAACCTTGAATGTGTTTGCTTAGTGAAACAGTTTTAGTCCTAATACATAAAATCTTAAATATG
GTGGCTATATTTTACAAAAATTGAGTTGAGATCAATAATGTGGTAAGTAATGTTAAAAGAAAAT
GTCAAATTTAAAGTTAAAATAAAAGTTGAACCTGATAGGGGTTTACAGGCTTATTAGCATCATA
AAAAGTATTCCTCTGGTTGTTTTTTTCTTTCTTTTTTGAACATCTGTATGAGGTTAAGTGTCTG
GGTGGCAAACCTGGGATGTTGCCTGAGTATTCGAAAGTACTATGAGCTACGCTAAAATACAAGC
CACTTAGAAGCTACTGTAAAGCTTTTCGAAGTTTTCCTGTAATCATAGGCAATAGTTTTTCCTA
AAATATAGTCAAGATGTGGCCTTCAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001007691	(Get FASTA)	NCBI Sequence Viewer
	XP_006227702	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH83823	(Get FASTA)	NCBI Sequence Viewer
	EDL93716	(Get FASTA)	NCBI Sequence Viewer
	Q5XI67	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_001007691 ⟸ NM_001007690

- UniProtKB:

Q5XI67 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MEEEVQQHSHCVNCVSRRCMTRPEPGVSCDLIGCPLVCGAVFHSCKADEHRLLCPFERVPCLNS
NFGCPFTLARNKVAEHLEMCPASVVCCTMEWNRWPVSYSDRKSYESLSRDADEVSQLDMALALQ
DQRMLLESLKVATMMSKATGKISKPREQISVNSSVQEVPRANGLVSADEESYGALYEATVETTR
SLAAALDILNSATRDIGMLNTSLQGTTNEMDEESNRESSQDRNAKDQDHLDEGEIGAVGGIDYT
GTSQNAQAEQNGSSDLLCNLNTSSYDTSALCNGFPLEKMCTQVKDQDQNFHGDSTESNITNGDC
VEADGTSEPPSSLLVAEQLKEGSALPDSTYQHILMPDEDDDEDLCWKKDLGDSKDVNGSPLSHA
TSFKFLSNSWYIPKEDKAVDTSDLEVAEDPMGLQGIDLITAALLFCLGDSPGGRGISDSRMVDV
YHVDFGTQTFSLPSAILATNTMVGEIASASACDHANPQLSNPSPFQTLGLDLVLECVARYQPKQ
RSMFTFVCGQLFRRKEFSSHFKNVHGDIHAGLNGWMEQRCPLAYYGCTYSQRRFCPSTQGAKII
HDRHLRSFGVQPCVSTALEEPSRNCVLGLRSDHLSSLPFEVLQHIAGFLDGFSLCQLACVSRLM
RDICGSLLQSRGMVILQWGKKKYPEGNSSWQIKEKVWRFSTAFCSVNDWKFADILSMADHLKKC
SYNVIEKREEAIPLPCMCVTRELTKEGRSLRSVLKPVL

hide sequence

RefSeq Acc Id:	XP_006227702 ⟸ XM_006227640
- Peptide Label:	isoform X1
- UniProtKB:	Q5XI67 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MEEEVQQHSHCVNCVSRRCMTRPEPGVSCDLIGCPLVCGAVFHSCKADEHRLLCPFERVPCLNS NFGCPFTLARNKVAEHLEMCPASVVCCTMEWNRWPVSYSDRKSYESLSRDADEVSQLDMALALQ DQRMLLESLKVATMMSKATGKISKPREQISVNSSVQEVPRANGLVSADEESYGALYEATVETTR SLAAALDILNSATRDIGMLNTSLQGTTNEMDEESNRESSQDRNAKDQDHLDEGEIGAVGGIDYT GTSQNAQAEQNGSSDLLCNLNTSSYDTSALCNGFPLEKMCTQVKDQDQNFHGDSTESNITNGDC VEADGTSEPPSSLLVAEQLKEGSALPDSTYQHILMPDEDDDEDLCWKKDLGDSKDVNGSPLSHA TSFKFLSNSWYIPKEDKAVDTSDLEVAEDPMGLQGIDLITAALLFCLGDSPGGRGISDSRMVDV YHVDFGTQTFSLPSAILATNTMVGEIASASACDHANPQLSNPSPFQTLGLDLVLECVARYQPKQ RSMFTFVCGQLFRRKEFSSHFKNVHGDIHAGLNGWMEQRCPLAYYGCTYSQRRFCPSTQGAKII HDRHLRSFGVQPCVSTALEEPSRNCVLGLRSDHLSSLPFEVLQHIAGFLDGFSLCQLACVSRLM RDICGSLLQSRGMVILQWGKKKYPEGNSSWQIKEKVWRFSTAFCSVNDWKFADILSMADHLKKC SYNVIEKREEAIPLPCMCVTRELTKEGRSLRSVLKPVL hide sequence

RefSeq Acc Id:

ENSRNOP00000019918 ⟸ ENSRNOT00000019918

Protein Domains

F-box

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q5XI67-F1-model_v2	AlphaFold	Q5XI67	1-742	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13689489

Promoter ID:

EPDNEW_R14

Type:

multiple initiation site

Name:

Fbxo30_1

Description:

F-box protein 30

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	1	5,366,371 - 5,366,431	EPDNEW

Strain Variation

Strain Sequence Variants (mRatBN7.2)

ACI/EurMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

ACI/N (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN-Lx/CubMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/NHsdMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/NHsdMcwi (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/SsN (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BUF/N (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BXH2/CubMcwi (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BXH3/CubMcwi (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

DA/OlaHsd (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Envigo
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/DuCrl (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/N (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/NCrl (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/Stm (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

FHH/EurMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

FXLE16/Stm (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

FXLE18/Stm (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

GK/FarMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB10/IpcvMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB2/IpcvMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB20/IpcvMcwi (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB31/IpcvMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB4/IpcvMcwi (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LE/Stm (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEW/Crl (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF10A/StmMcwi (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF11/Stm (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF1A/Stm (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF1C/Stm (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF2B/Stm (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF3/Stm (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF4/Stm (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LH/MavRrrcAek (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Kwitek
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LL/MavRrrcAek (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Kwitek
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LN/MavRrrcAek (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Kwitek
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

M520/N (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

M520/NRrrcMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

MR/N (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

MWF/Hsd (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

PVG/Seac (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SHR/OlalpcvMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SHRSP/A3NCrl (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SR/JrHsd (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Envigo
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SS/JrHsdMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WAG/RijCrl (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WKY/N (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WKY/NCrl (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WN/N (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1359367	AgrOrtholog
BioCyc Gene	G2FUF-62401	BioCyc
Ensembl Genes	ENSRNOG00000014852	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein	ENSRNOP00000019918	ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000019918	ENTREZGENE, UniProtKB/Swiss-Prot
Gene3D-CATH	3.30.40.10	UniProtKB/Swiss-Prot
	3.30.40.150	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7111792	IMAGE-MGC_LOAD
InterPro	F-box-like_dom_sf	UniProtKB/Swiss-Prot
	F-box_dom	UniProtKB/Swiss-Prot
	Fbxo30/Fbxo40	UniProtKB/Swiss-Prot
	Znf_RING/FYVE/PHD	UniProtKB/Swiss-Prot
	Znf_TRAF	UniProtKB/Swiss-Prot
	Znf_TRAF_N	UniProtKB/Swiss-Prot
KEGG Report	rno:308283	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:94907	IMAGE-MGC_LOAD
NCBI Gene	308283	ENTREZGENE
PANTHER	PTHR15933	UniProtKB/Swiss-Prot
Pfam	F-box_4	UniProtKB/Swiss-Prot
	zf-TRAF_2	UniProtKB/Swiss-Prot
PhenoGen	Fbxo30	PhenoGen
PROSITE	FBOX	UniProtKB/Swiss-Prot
	ZF_TRAF	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF81383	UniProtKB/Swiss-Prot
UniProt	FBX30_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2006-03-30	Fbxo30	F-box protein 30		F-box only protein 30	Name updated	1299863	APPROVED
2005-07-29	Fbxo30	F-box only protein 30			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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