LOC306766 (hypothetical LOC306766) - Rat Genome Database

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Gene: LOC306766 (hypothetical LOC306766) Rattus norvegicus
Analyze
Symbol: LOC306766
Name: hypothetical LOC306766
RGD ID: 1359256
Description: Predicted to enable oxidoreductase activity. Predicted to be active in cytoplasm. Orthologous to human KIAA1191 (KIAA1191); INTERACTS WITH bisphenol A; Brodifacoum; acrolein (ortholog).
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: Aa2-141; hypothetical protein LOC306766; liver regeneration-related protein LRRG011; MGC94694; P33monox; putative monooxygenase p33MONOX; UPF0498 protein KIAA1191 homolog
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21710,049,142 - 10,061,819 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1710,049,160 - 10,061,819 (+)Ensembl
Rnor_6.01710,586,043 - 10,598,631 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1710,586,043 - 10,598,629 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01712,711,986 - 12,724,574 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41716,112,557 - 16,125,153 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11716,112,556 - 16,125,151 (+)NCBI
Celera1710,122,065 - 10,134,660 (+)NCBICelera
Cytogenetic Map17p14NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cellular_component  (ND)
cytoplasm  (IBA,IEA,ISO,ISS)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Identification and analysis of genes from the mouse otic vesicle and their association with developmental subprocesses through in situ hybridization. Powles N, etal., Dev Biol 2004 Apr 1;268(1):24-38.
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:21153684  


Genomics

Candidate Gene Status
LOC306766 is a candidate Gene for QTL Kidm52
Comparative Map Data
LOC306766
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21710,049,142 - 10,061,819 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1710,049,160 - 10,061,819 (+)Ensembl
Rnor_6.01710,586,043 - 10,598,631 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1710,586,043 - 10,598,629 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01712,711,986 - 12,724,574 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41716,112,557 - 16,125,153 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11716,112,556 - 16,125,151 (+)NCBI
Celera1710,122,065 - 10,134,660 (+)NCBICelera
Cytogenetic Map17p14NCBI
KIAA1191
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385176,346,061 - 176,361,807 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl5176,346,062 - 176,361,807 (-)EnsemblGRCh38hg38GRCh38
GRCh375175,773,064 - 175,788,810 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 365175,705,671 - 175,721,415 (-)NCBINCBI36hg18NCBI36
Celera5172,713,646 - 172,729,390 (+)NCBI
Cytogenetic Map5q35.2NCBI
HuRef5170,697,576 - 170,713,319 (-)NCBIHuRef
CHM1_15175,205,893 - 175,221,759 (-)NCBICHM1_1
T2T-CHM13v2.05176,890,409 - 176,906,154 (-)NCBI
4833439L19Rik
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391354,699,031 - 54,713,195 (-)NCBIGRCm39mm39
GRCm39 Ensembl1354,699,031 - 54,713,248 (-)Ensembl
GRCm381354,551,218 - 54,565,382 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1354,551,218 - 54,565,435 (-)EnsemblGRCm38mm10GRCm38
MGSCv371354,652,580 - 54,666,743 (-)NCBIGRCm37mm9NCBIm37
MGSCv361354,560,847 - 54,574,962 (-)NCBImm8
Celera1355,617,213 - 55,631,376 (-)NCBICelera
Cytogenetic Map13B1NCBI
Kiaa1191
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540828,631,223 - 28,645,893 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540828,631,523 - 28,645,882 (-)NCBIChiLan1.0ChiLan1.0
KIAA1191
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.15178,716,275 - 178,731,754 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5178,716,275 - 178,731,506 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v05171,643,324 - 171,659,039 (-)NCBIMhudiblu_PPA_v0panPan3
KIAA1191
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1436,957,322 - 36,980,616 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl436,966,309 - 36,979,440 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha436,933,707 - 36,948,106 (+)NCBI
ROS_Cfam_1.0437,333,790 - 37,348,192 (+)NCBI
ROS_Cfam_1.0 Ensembl437,333,870 - 37,348,192 (+)Ensembl
UMICH_Zoey_3.1437,159,067 - 37,173,477 (+)NCBI
UNSW_CanFamBas_1.0437,346,719 - 37,361,100 (+)NCBI
UU_Cfam_GSD_1.0437,855,749 - 37,870,147 (+)NCBI
Kiaa1191
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213121,549,347 - 121,564,988 (-)NCBI
SpeTri2.0NW_004936597574,254 - 589,898 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KIAA1191
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl281,520,408 - 81,539,624 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1281,506,407 - 81,539,624 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2283,158,604 - 83,191,026 (+)NCBISscrofa10.2Sscrofa10.2susScr3
KIAA1191
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12378,345,378 - 78,362,880 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl2378,346,892 - 78,362,901 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660759,472,776 - 9,491,186 (-)NCBIVero_WHO_p1.0
Kiaa1191
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473313,788,952 - 13,805,988 (+)NCBIHetGla_female_1.0hetGla2

Position Markers
RH142833  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21710,050,756 - 10,050,925 (+)MAPPERmRatBN7.2
Rnor_6.01710,587,570 - 10,587,738NCBIRnor6.0
Rnor_5.01712,713,513 - 12,713,681UniSTSRnor5.0
RGSC_v3.41716,114,084 - 16,114,252UniSTSRGSC3.4
Celera1710,123,592 - 10,123,760UniSTS
RH 3.4 Map1796.3UniSTS
Cytogenetic Map17p14UniSTS
BI277828  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21710,061,485 - 10,061,640 (+)MAPPERmRatBN7.2
Rnor_6.01710,598,298 - 10,598,452NCBIRnor6.0
Rnor_5.01712,724,241 - 12,724,395UniSTSRnor5.0
RGSC_v3.41716,124,820 - 16,124,974UniSTSRGSC3.4
Celera1710,134,327 - 10,134,481UniSTS
RH 3.4 Map1794.7UniSTS
Cytogenetic Map17p14UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
9590316Scort21Serum corticosterone level QTL 214.750.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)17122871563Rat
10401807Kidm52Kidney mass QTL 52kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)17131701463Rat
70184BpQTLcluster14Blood pressure QTL cluster 143.38arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)17131990913Rat
631207Niddm41Non-insulin dependent diabetes mellitus QTL 41blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)17137830672Rat
1354658Spl8Serum phospholipid level QTL 83.8blood VLDL phospholipid amount (VT:0010507)blood very low density lipoprotein phospholipid level (CMO:0001571)17160781592Rat
1354581Bp247Blood pressure QTL 2474.5arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)17169599340Rat
1354662Rf49Renal function QTL 492.9blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)17169599340Rat
1641902Colcr7Colorectal carcinoma resistance QTL 73.350.0044intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)17211514921881669Rat
1300123Bp194Blood pressure QTL 1942.82arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)17211514934551001Rat
631499Stl1Serum triglyceride level QTL 13.6blood triglyceride amount (VT:0002644)blood triglyceride level (CMO:0000118)17327139827389946Rat
2324619Coatc4Coat color QTL 40.001coat/hair pigmentation trait (VT:0010463)pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)17429913021293263Rat
2324619Coatc4Coat color QTL 40.001coat/hair pigmentation trait (VT:0010463)pigmented dorsal coat/hair area to total dorsal coat/hair area ratio (CMO:0001811)17429913021293263Rat
1354613Kidm14Kidney mass QTL 146.2kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)17429913035837242Rat
1354596Bw32Body weight QTL 324.5body mass (VT:0001259)body weight (CMO:0000012)17429913060781592Rat
1354630Cm34Cardiac mass QTL 348.7heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)17429913069599340Rat
1354638Insul1Insulin level QTL 14.8blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)17429913069599340Rat
1354651Lmblg2Limb length QTL 26tibia length (VT:0004357)tibia length (CMO:0000450)17429913069599340Rat
2293648Bmd31Bone mineral density QTL 314.50.0001femur size trait (VT:1000369)femoral neck cortical cross-sectional area (CMO:0001702)17435448727028127Rat
2293664Bmd28Bone mineral density QTL 285.10.0001femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)17435448727028127Rat
2303627Vencon8Ventilatory control QTL 80.001respiration trait (VT:0001943)tidal volume (CMO:0000222)17452803849528038Rat
10054088Scort28Serum corticosterone level QTL 282.040.0102blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)17452803849528038Rat
1581553Pur14Proteinuria QTL 145.30.0001total urine protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)17797996816317111Rat
2303561Bw91Body weight QTL 912body mass (VT:0001259)body weight (CMO:0000012)17886846253868462Rat
1582199Insul5Insulin level QTL 53.40.0119blood insulin amount (VT:0001560)calculated serum insulin level (CMO:0000359)17920136523653323Rat
1582208Kidm32Kidney mass QTL 323.90.0018kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)17920136523653323Rat
1582224Epfw4Epididymal fat weight QTL 43.50.0058epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)17920136523653323Rat
1582225Bw67Body weight QTL 676.20.0001body mass (VT:0001259)body weight (CMO:0000012)17920136523653323Rat
1582226Bw64Body weight QTL 644.20.0017body mass (VT:0001259)body weight (CMO:0000012)17920136523653323Rat
1582241Bw70Body weight QTL 704.60.0003body mass (VT:0001259)body weight (CMO:0000012)17920136523653323Rat
1582245Bw73Body weight QTL 734.60.0004body mass (VT:0001259)body weight (CMO:0000012)17920136523653323Rat
1582258Bw76Body weight QTL 764.60.0005body mass (VT:0001259)body weight (CMO:0000012)17920136523653323Rat
2300002Iddm36Insulin dependent diabetes mellitus QTL 361.98blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)17999128640540197Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:484
Count of miRNA genes:249
Interacting mature miRNAs:302
Transcripts:ENSRNOT00000023125
Prediction methods:Microtar, Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 57 41 19 41 8 11 74 35 41 11 8
Low
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001014007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095627 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095628 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095629 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095630 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095631 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095632 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095633 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095634 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095635 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095636 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095638 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AY325163 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC085893 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474032 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000284 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000023125   ⟹   ENSRNOP00000023125
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1710,049,160 - 10,061,814 (+)Ensembl
Rnor_6.0 Ensembl1710,586,043 - 10,598,629 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000098242   ⟹   ENSRNOP00000085391
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1710,049,160 - 10,061,806 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000104003   ⟹   ENSRNOP00000090160
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1710,053,209 - 10,061,819 (+)Ensembl
RefSeq Acc Id: NM_001014007   ⟹   NP_001014029
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21710,049,230 - 10,061,819 (+)NCBI
Rnor_6.01710,586,043 - 10,598,631 (+)NCBI
Rnor_5.01712,711,986 - 12,724,574 (+)NCBI
RGSC_v3.41716,112,557 - 16,125,153 (+)RGD
Celera1710,122,065 - 10,134,660 (+)RGD
Sequence:
RefSeq Acc Id: XM_039095627   ⟹   XP_038951555
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21710,049,143 - 10,061,813 (+)NCBI
RefSeq Acc Id: XM_039095628   ⟹   XP_038951556
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21710,049,143 - 10,061,819 (+)NCBI
RefSeq Acc Id: XM_039095629   ⟹   XP_038951557
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21710,049,143 - 10,061,819 (+)NCBI
RefSeq Acc Id: XM_039095630   ⟹   XP_038951558
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21710,049,143 - 10,061,819 (+)NCBI
RefSeq Acc Id: XM_039095631   ⟹   XP_038951559
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21710,049,166 - 10,061,819 (+)NCBI
RefSeq Acc Id: XM_039095632   ⟹   XP_038951560
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21710,049,142 - 10,061,819 (+)NCBI
RefSeq Acc Id: XM_039095633   ⟹   XP_038951561
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21710,049,142 - 10,061,819 (+)NCBI
RefSeq Acc Id: XM_039095634   ⟹   XP_038951562
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21710,049,142 - 10,061,819 (+)NCBI
RefSeq Acc Id: XM_039095635   ⟹   XP_038951563
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21710,049,143 - 10,061,819 (+)NCBI
RefSeq Acc Id: XM_039095636   ⟹   XP_038951564
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21710,049,143 - 10,061,819 (+)NCBI
RefSeq Acc Id: XM_039095638   ⟹   XP_038951566
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21710,049,144 - 10,061,819 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_001014029   ⟸   NM_001014007
- UniProtKB: Q7TP81 (UniProtKB/Swiss-Prot),   Q5U2R6 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSRNOP00000023125   ⟸   ENSRNOT00000023125
RefSeq Acc Id: XP_038951561   ⟸   XM_039095633
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038951560   ⟸   XM_039095632
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038951562   ⟸   XM_039095634
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038951557   ⟸   XM_039095629
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038951563   ⟸   XM_039095635
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038951558   ⟸   XM_039095630
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038951556   ⟸   XM_039095628
- Peptide Label: isoform X1
- UniProtKB: Q7TP81 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_038951564   ⟸   XM_039095636
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038951555   ⟸   XM_039095627
- Peptide Label: isoform X1
- UniProtKB: Q7TP81 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_038951566   ⟸   XM_039095638
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038951559   ⟸   XM_039095631
- Peptide Label: isoform X2
RefSeq Acc Id: ENSRNOP00000085391   ⟸   ENSRNOT00000098242
RefSeq Acc Id: ENSRNOP00000090160   ⟸   ENSRNOT00000104003

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5U2R6-F1-model_v2 AlphaFold Q5U2R6 1-304 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700324
Promoter ID:EPDNEW_R10847
Type:initiation region
Name:LOC306766_1
Description:hypothetical LOC306766
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01710,585,973 - 10,586,033EPDNEW

Strain Variation

Strain Sequence Variants (mRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1359256 AgrOrtholog
BioCyc Gene G2FUF-10172 BioCyc
Ensembl Genes ENSRNOG00000017133 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000023125 ENTREZGENE
  ENSRNOP00000023125.7 UniProtKB/TrEMBL
  ENSRNOP00000085391 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOP00000090160 ENTREZGENE
  ENSRNOP00000090160.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000023125 ENTREZGENE
  ENSRNOT00000023125.8 UniProtKB/TrEMBL
  ENSRNOT00000098242 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOT00000104003 ENTREZGENE
  ENSRNOT00000104003.1 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7192798 IMAGE-MGC_LOAD
InterPro P33MONOX UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:306766 UniProtKB/Swiss-Prot
MGC_CLONE MGC:94694 IMAGE-MGC_LOAD
NCBI Gene 306766 ENTREZGENE
PANTHER PTHR28342 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam P33MONOX UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen LOC306766 PhenoGen
UniProt A0A8I6GIN5_RAT UniProtKB/TrEMBL
  A0A8L2QBW0_RAT UniProtKB/TrEMBL
  P33MX_RAT UniProtKB/Swiss-Prot, ENTREZGENE
  Q7TP81 ENTREZGENE
UniProt Secondary Q7TP81 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-07-29 LOC306766  hypothetical LOC306766      Symbol and Name status set to provisional 70820 PROVISIONAL