Pir (pirin) - Rat Genome Database

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Gene: Pir (pirin) Rattus norvegicus
Analyze
Symbol: Pir
Name: pirin
RGD ID: 1359212
Description: Predicted to enable metal ion binding activity; quercetin 2,3-dioxygenase activity; and transcription coregulator activity. Predicted to be involved in monocyte differentiation. Predicted to act upstream of or within myeloid cell differentiation. Predicted to be located in cytosol. Predicted to be active in nucleus. Orthologous to human PIR (pirin); INTERACTS WITH 1,3-dinitrobenzene; 2,2',4,4'-Tetrabromodiphenyl ether; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: MGC109484; pirin (iron-binding nuclear protein); probable quercetin 2,3-dioxygenase PIR; probable quercetinase
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2X30,108,536 - 30,219,269 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX30,108,538 - 30,219,218 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX31,147,941 - 31,251,719 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0X34,578,429 - 34,689,049 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0X30,772,761 - 30,876,540 (-)NCBIRnor_WKY
Rnor_6.0X31,852,322 - 31,968,152 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX31,852,323 - 31,968,152 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X32,226,073 - 32,341,358 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X50,864,981 - 50,974,861 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1X50,918,450 - 51,028,330 (-)NCBI
CeleraX30,455,202 - 30,563,741 (-)NCBICelera
Cytogenetic MapXq14NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,1-dichloroethene  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
1,3-dinitrobenzene  (EXP)
1,4-phenylenediamine  (ISO)
1-chloro-2,4-dinitrobenzene  (ISO)
1-nitropyrene  (ISO)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
2,4,6-trinitrobenzenesulfonic acid  (ISO)
2,4,6-trinitrotoluene  (EXP)
2,4-dinitrotoluene  (EXP)
2,6-dinitrotoluene  (EXP)
2-amino-4,6-dinitrotoluene  (EXP)
2-methylcholine  (ISO)
3-chloropropane-1,2-diol  (EXP)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
3-phenylprop-2-enal  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-amino-2,6-dinitrotoluene  (EXP)
4-hydroxyphenyl retinamide  (ISO)
5-fluorouracil  (ISO)
9-cis-retinoic acid  (ISO)
acetamide  (EXP)
acrolein  (ISO)
acrylamide  (ISO)
adefovir pivoxil  (ISO)
aflatoxin B1  (EXP,ISO)
Aflatoxin B2 alpha  (ISO)
all-trans-4-oxoretinoic acid  (ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
ampicillin  (ISO)
antimonite  (ISO)
antirheumatic drug  (ISO)
aristolochic acid  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (ISO)
benzo[e]pyrene  (ISO)
benzylpenicillin  (ISO)
beta-naphthoflavone  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
bortezomib  (ISO)
bromobenzene  (EXP)
cadmium dichloride  (ISO)
cadmium sulfate  (ISO)
carbamazepine  (ISO)
carbon nanotube  (ISO)
cefaloridine  (EXP)
CGP 52608  (ISO)
chloroacetaldehyde  (ISO)
chlorohydrocarbon  (EXP)
chloroprene  (EXP,ISO)
chlorpromazine  (EXP)
cidofovir anhydrous  (ISO)
cisplatin  (ISO)
clodronic acid  (ISO)
cobalt atom  (ISO)
cobalt dichloride  (EXP,ISO)
copper atom  (ISO)
copper(0)  (ISO)
curcumin  (EXP)
cyclosporin A  (ISO)
dexamethasone  (ISO)
diarsenic trioxide  (ISO)
diethyl maleate  (ISO)
diethylstilbestrol  (EXP)
dioxygen  (ISO)
dipotassium bis[mu-tartrato(4-)]diantimonate(2-) trihydrate  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
entinostat  (ISO)
fenofibrate  (EXP)
finasteride  (EXP)
fipronil  (EXP)
flutamide  (EXP)
formaldehyde  (ISO)
gentamycin  (EXP)
hydrogen peroxide  (ISO)
indole-3-methanol  (EXP)
indometacin  (ISO)
isoflavones  (ISO)
isoprenaline  (ISO)
isotretinoin  (ISO)
ivermectin  (ISO)
lead diacetate  (ISO)
leflunomide  (EXP)
lipopolysaccharide  (ISO)
mercury dibromide  (ISO)
mercury dichloride  (ISO)
metformin  (EXP)
methapyrilene  (ISO)
methylmercury chloride  (EXP,ISO)
mitomycin C  (ISO)
N(6)-dimethylallyladenine  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
N-nitrosodiethylamine  (EXP)
nefazodone  (EXP)
nevirapine  (EXP)
nickel sulfate  (ISO)
nimesulide  (EXP)
oxaliplatin  (EXP)
ozone  (ISO)
p-chloromercuribenzoic acid  (ISO)
paracetamol  (EXP,ISO)
paraquat  (EXP)
pentachlorophenol  (ISO)
phenobarbital  (ISO)
phenoxymethylpenicillin  (ISO)
phenylmercury acetate  (ISO)
pirinixic acid  (ISO)
quercetin  (ISO)
rotenone  (EXP)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
sodium arsenite  (ISO)
sodium dodecyl sulfate  (ISO)
succimer  (ISO)
sulfamethoxazole  (ISO)
sulforaphane  (ISO)
sunitinib  (ISO)
tetrachloromethane  (EXP)
thimerosal  (ISO)
thioacetamide  (EXP)
topotecan  (EXP)
trichloroethene  (EXP)
triphenyl phosphate  (EXP)
triptonide  (ISO)
Tungsten carbide  (ISO)
tunicamycin  (ISO)
urethane  (ISO)
valdecoxib  (EXP)
valproic acid  (ISO)
vincaleukoblastine  (ISO)
vinclozolin  (EXP)
xylitol  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (ISO,ISS)
cytosol  (IEA,ISO)
nucleus  (IBA,ISO,ISS)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Identification of key genes and pathways associated with cholangiocarcinoma development based on weighted gene correlation network analysis. Liu J, etal., PeerJ. 2019 Oct 31;7:e7968. doi: 10.7717/peerj.7968. eCollection 2019.
4. Crystal structure of human pirin: an iron-binding nuclear protein and transcription cofactor. Pang H, etal., J Biol Chem 2004 Jan 9;279(2):1491-8. Epub 2003 Oct 22.
5. GOA pipeline RGD automated data pipeline
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
8. Identification of pirin, a novel highly conserved nuclear protein. Wendler WM, etal., J Biol Chem 1997 Mar 28;272(13):8482-9.
Additional References at PubMed
PMID:15951572   PMID:20010624   PMID:20089166   PMID:20711196   PMID:23716661  


Genomics

Comparative Map Data
Pir
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2X30,108,536 - 30,219,269 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX30,108,538 - 30,219,218 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX31,147,941 - 31,251,719 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0X34,578,429 - 34,689,049 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0X30,772,761 - 30,876,540 (-)NCBIRnor_WKY
Rnor_6.0X31,852,322 - 31,968,152 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX31,852,323 - 31,968,152 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X32,226,073 - 32,341,358 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X50,864,981 - 50,974,861 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1X50,918,450 - 51,028,330 (-)NCBI
CeleraX30,455,202 - 30,563,741 (-)NCBICelera
Cytogenetic MapXq14NCBI
PIR
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X15,384,799 - 15,493,333 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 EnsemblX15,384,799 - 15,493,564 (-)EnsemblGRCh38hg38GRCh38
GRCh37X15,402,921 - 15,511,456 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X15,312,842 - 15,421,385 (-)NCBINCBI36Build 36hg18NCBI36
Build 34X15,162,582 - 15,271,113NCBI
CeleraX19,518,436 - 19,626,837 (-)NCBICelera
Cytogenetic MapXp22.2NCBI
HuRefX13,159,639 - 13,268,835 (-)NCBIHuRef
CHM1_1X15,433,843 - 15,542,647 (-)NCBICHM1_1
T2T-CHM13v2.0X14,967,733 - 15,076,309 (-)NCBIT2T-CHM13v2.0
Pir
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X163,052,427 - 163,156,009 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX163,052,367 - 163,156,007 (+)EnsemblGRCm39 Ensembl
GRCm38X164,269,431 - 164,373,013 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX164,269,371 - 164,373,011 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X160,707,363 - 160,810,945 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X159,613,542 - 159,717,010 (+)NCBIMGSCv36mm8
CeleraX147,485,273 - 147,588,412 (+)NCBICelera
Cytogenetic MapXF5NCBI
Pir
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555192,698,172 - 2,813,206 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555192,698,207 - 2,813,201 (+)NCBIChiLan1.0ChiLan1.0
PIR
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1X15,294,094 - 15,403,506 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX15,294,099 - 15,404,004 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0X8,011,382 - 8,121,994 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PIR
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X11,627,337 - 11,733,489 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX11,627,337 - 11,733,489 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX11,534,820 - 11,640,316 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X11,589,671 - 11,695,482 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX11,589,671 - 11,695,478 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X11,652,577 - 11,758,046 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X11,643,915 - 11,752,389 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X11,672,015 - 11,777,580 (-)NCBIUU_Cfam_GSD_1.0
Pir
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X4,794,803 - 4,902,157 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364704,793,823 - 4,902,471 (-)EnsemblSpeTri2.0
SpeTri2.0NW_0049364704,794,803 - 4,902,211 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PIR
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX11,934,163 - 12,033,746 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X11,934,157 - 12,034,629 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X12,894,760 - 12,994,430 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PIR
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X13,854,356 - 13,966,554 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX13,854,236 - 13,966,506 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605615,690,384 - 15,800,824 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pir
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624829180,129 - 286,429 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624829181,918 - 286,348 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Pir
563 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:112
Count of miRNA genes:85
Interacting mature miRNAs:100
Transcripts:ENSRNOT00000004884
Prediction methods:Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61430Cia18Collagen induced arthritis QTL 183.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)X14843113120568734Rat
71116Niddm16Non-insulin dependent diabetes mellitus QTL 167.81blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)X1529780260297802Rat
70165Bp64Blood pressure QTL 645.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)X144812931706553Rat
1298071Edpm12Estrogen-dependent pituitary mass QTL 123.2pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)X292789847927898Rat
631666Iddm5Insulin dependent diabetes mellitus QTL 5blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)X449454949494549Rat
731181Uae27Urinary albumin excretion QTL 272.70.0059urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)X143491017Rat
1598873Memor2Memory QTL 22.5exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)X2099094741052531Rat
2290375Gluco34Glucose level QTL 342.75blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)X2099094741203591Rat
10755455Coatc13Coat color QTL 130coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7440600049406000Rat

Markers in Region
DXGot128  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X30,121,236 - 30,121,317 (+)MAPPERmRatBN7.2
Rnor_6.0X31,864,308 - 31,864,388NCBIRnor6.0
Rnor_5.0X32,238,059 - 32,238,139UniSTSRnor5.0
RGSC_v3.4X50,877,681 - 50,877,761UniSTSRGSC3.4
CeleraX30,467,840 - 30,467,920UniSTS
Cytogenetic MapXq21UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 10 27 20 3 20 19 2 32 11
Low 1 33 30 21 16 21 8 10 55 33 9 8
Below cutoff 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000004884   ⟹   ENSRNOP00000004884
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX30,108,538 - 30,219,218 (-)Ensembl
Rnor_6.0 EnsemblX31,852,323 - 31,968,152 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000111021   ⟹   ENSRNOP00000083645
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX30,108,538 - 30,219,146 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000112847   ⟹   ENSRNOP00000096940
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX30,108,538 - 30,219,218 (-)Ensembl
RefSeq Acc Id: NM_001009474   ⟹   NP_001009474
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2X30,108,536 - 30,219,169 (-)NCBI
Rnor_6.0X31,852,322 - 31,968,152 (-)NCBI
Rnor_5.0X32,226,073 - 32,341,358 (-)NCBI
RGSC_v3.4X50,864,981 - 50,974,861 (-)RGD
CeleraX30,455,202 - 30,563,741 (-)RGD
Sequence:
RefSeq Acc Id: XM_039099890   ⟹   XP_038955818
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2X30,108,536 - 30,217,105 (-)NCBI
RefSeq Acc Id: XM_039099891   ⟹   XP_038955819
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2X30,108,536 - 30,219,269 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001009474 (Get FASTA)   NCBI Sequence Viewer  
  XP_038955818 (Get FASTA)   NCBI Sequence Viewer  
  XP_038955819 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH88290 (Get FASTA)   NCBI Sequence Viewer  
  Q5M827 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001009474   ⟸   NM_001009474
- UniProtKB: Q5M827 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSRNOP00000004884   ⟸   ENSRNOT00000004884
RefSeq Acc Id: XP_038955819   ⟸   XM_039099891
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038955818   ⟸   XM_039099890
- Peptide Label: isoform X1
RefSeq Acc Id: ENSRNOP00000083645   ⟸   ENSRNOT00000111021
RefSeq Acc Id: ENSRNOP00000096940   ⟸   ENSRNOT00000112847
Protein Domains
Pirin   Pirin_C

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5M827-F1-model_v2 AlphaFold Q5M827 1-291 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701796
Promoter ID:EPDNEW_R12320
Type:initiation region
Name:Pir_1
Description:pirin
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0X31,968,113 - 31,968,173EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1359212 AgrOrtholog
BioCyc Gene G2FUF-2591 BioCyc
Ensembl Genes ENSRNOG00000003674 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000004884 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOP00000083645.1 UniProtKB/TrEMBL
  ENSRNOP00000096940.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000004884 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOT00000111021.1 UniProtKB/TrEMBL
  ENSRNOT00000112847.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.120.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7322321 IMAGE-MGC_LOAD
InterPro Pirin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Pirin_C_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Pirin_N_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RmlC-like_jellyroll UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RmlC_Cupin_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:363465 UniProtKB/Swiss-Prot
MGC_CLONE MGC:109484 IMAGE-MGC_LOAD
NCBI Gene 363465 ENTREZGENE
PANTHER PTHR13903 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Pirin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Pirin_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Pir PhenoGen
PIRSF Pirin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF51182 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8I5ZXG1_RAT UniProtKB/TrEMBL
  A0A8I6ATI7_RAT UniProtKB/TrEMBL
  PIR_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-12-10 Pir  pirin  Pir  pirin (iron-binding nuclear protein)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-09-09 Pir  pirin (iron-binding nuclear protein)  Pir  pirin  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-11-17 Pir  pirin      Symbol and Name status set to approved 1299863 APPROVED
2005-07-29 Pir  pirin      Symbol and Name status set to provisional 70820 PROVISIONAL