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Gene: HOXD9 (homeobox D9) Homo sapiens
Symbol: HOXD9
Name: homeobox D9
Description: Exhibits DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II regulatory region sequence-specific DNA binding activity. Involved in negative regulation of transcription by RNA polymerase II. Localizes to the nucleolus and nucleoplasm.
Type: protein-coding
RefSeq Status: REVIEWED
Also known as: homeo box D9; homeobox protein Hox-4C; homeobox protein Hox-5.2; homeobox protein Hox-D9; Hox-4.3; Hox-4.3, mouse, homolog of; Hox-5.2; HOX4; HOX4C
Mus musculus (house mouse) : Hoxd9 (homeobox D9)  MGI  Alliance
Rattus norvegicus (Norway rat) : Hoxd9 (homeo box D9)  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Hoxd9 (homeobox D9)
Pan paniscus (bonobo/pygmy chimpanzee) : HOXD9 (homeobox D9)
Canis lupus familiaris (dog) : HOXD9 (homeobox D9)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Hoxd9 (homeobox D9)
Sus scrofa (pig) : HOXD9 (homeobox D9)
Chlorocebus sabaeus (green monkey) : HOXD9 (homeobox D9)
Heterocephalus glaber (naked mole-rat) : Hoxd9 (homeobox D9)
more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Human AssemblyChrPosition (strand)SourceGenome Browsers
GRCh38 Ensembl2176,122,719 - 176,124,937 (+)Ensembl
GRCh382176,122,719 - 176,124,937 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh372176,987,413 - 176,989,645 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362176,695,334 - 176,697,770 (+)NCBINCBI36hg18NCBI36
Build 342176,812,594 - 176,815,031NCBI
Celera2170,596,564 - 170,598,796 (+)NCBI
Cytogenetic Map2q31.1NCBI
HuRef2168,864,337 - 168,866,570 (+)NCBIHuRef
CHM1_12176,993,281 - 176,995,514 (+)NCBICHM1_1
JBrowse: View Region in Genome Browser (JBrowse)

Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated


Comparative Map Data
Position Markers
miRNA Target Status


RNA-SEQ Expression


Nucleotide Sequences
Protein Sequences
Clinical Variants

Additional Information

External Database Links
More on HOXD9
Alliance Gene
Ensembl Gene
JBrowse: hg19 hg38
HGNC Report
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1354432
Created: 2005-03-08
Species: Homo sapiens
Last Modified: 2020-02-11
Status: ACTIVE


RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.