ASS1P2 (argininosuccinate synthetase 1 pseudogene 2) - Rat Genome Database

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Gene: ASS1P2 (argininosuccinate synthetase 1 pseudogene 2) Homo sapiens
Analyze
Symbol: ASS1P2
Name: argininosuccinate synthetase 1 pseudogene 2
RGD ID: 1354180
HGNC Page HGNC:765
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: ASSP2
Related Functional Gene: ASS1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38238,810,215 - 38,811,756 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl238,810,432 - 38,811,654 (-)EnsemblGRCh38hg38GRCh38
GRCh37239,037,357 - 39,038,898 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36238,890,871 - 38,892,570 (-)NCBINCBI36Build 36hg18NCBI36
Celera238,878,378 - 38,879,919 (-)NCBICelera
Cytogenetic Map2p22.1NCBI
HuRef238,776,130 - 38,777,671 (-)NCBIHuRef
CHM1_1238,968,184 - 38,969,725 (-)NCBICHM1_1
T2T-CHM13v2.0238,819,003 - 38,820,544 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:6093508   PMID:9847074  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:308
Count of miRNA genes:295
Interacting mature miRNAs:307
Transcripts:ENST00000439895
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium
Low 396 265 949 256 344 237 786 217 1020 101 974 698 26 172 498 2
Below cutoff 1922 2247 736 331 1118 198 3294 1753 2455 264 454 861 138 986 2087 2

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000439895
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl238,810,432 - 38,811,654 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC ASS1P2 COSMIC
Ensembl Genes ENSG00000223922 Ensembl, ENTREZGENE
GTEx ENSG00000223922 GTEx
HGNC ID HGNC:765 ENTREZGENE
Human Proteome Map ASS1P2 Human Proteome Map
NCBI Gene 447 ENTREZGENE
PharmGKB PA25067 PharmGKB


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-27 ASS1P2  argininosuccinate synthetase 1 pseudogene 2  ASSP2  argininosuccinate synthetase pseudogene 2  Symbol and/or name change 5135510 APPROVED