LEPROT (leptin receptor overlapping transcript) - Rat Genome Database

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Gene: LEPROT (leptin receptor overlapping transcript) Homo sapiens
Analyze
Symbol: LEPROT
Name: leptin receptor overlapping transcript
RGD ID: 1353937
HGNC Page HGNC:29477
Description: Enables signaling receptor binding activity. Involved in negative regulation of growth hormone receptor signaling pathway; negative regulation of protein localization to cell surface; and negative regulation of receptor signaling pathway via JAK-STAT. Located in Golgi apparatus and endosome.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: DnaJ (Hsp40) homolog, subfamily C, member 6; endospanin; endospanin-1; FLJ37482; FLJ90360; LEPR; leptin receptor gene related protein; leptin receptor gene-related protein; leptin receptor overlapping transcript protein; OB-R gene-related protein; OB-RGRP; OBRGRP; VPS55
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38165,420,668 - 65,436,007 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl165,420,587 - 65,436,007 (+)EnsemblGRCh38hg38GRCh38
GRCh37165,886,351 - 65,901,690 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36165,658,907 - 65,670,852 (+)NCBINCBI36Build 36hg18NCBI36
Build 34165,598,339 - 65,610,270NCBI
Celera164,176,916 - 64,192,274 (+)NCBICelera
Cytogenetic Map1p31.3NCBI
HuRef163,994,919 - 64,010,490 (+)NCBIHuRef
CHM1_1166,002,402 - 66,017,961 (+)NCBICHM1_1
T2T-CHM13v2.0165,298,645 - 65,313,980 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
endosome  (IBA,IDA,IEA)
endosome membrane  (IEA)
Golgi apparatus  (IDA,IEA)
Golgi membrane  (IEA)
membrane  (IEA)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
References

References - curated
# Reference Title Reference Citation
1. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:8889548   PMID:9207021   PMID:14702039   PMID:15489334   PMID:16303743   PMID:16712791   PMID:18042720   PMID:19322201   PMID:19907080   PMID:19913121   PMID:20416077   PMID:20624279  
PMID:20628086   PMID:21454707   PMID:21873635   PMID:24270810   PMID:28298427   PMID:29987050   PMID:32296183   PMID:37314216   PMID:38716728  


Genomics

Comparative Map Data
LEPROT
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38165,420,668 - 65,436,007 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl165,420,587 - 65,436,007 (+)EnsemblGRCh38hg38GRCh38
GRCh37165,886,351 - 65,901,690 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36165,658,907 - 65,670,852 (+)NCBINCBI36Build 36hg18NCBI36
Build 34165,598,339 - 65,610,270NCBI
Celera164,176,916 - 64,192,274 (+)NCBICelera
Cytogenetic Map1p31.3NCBI
HuRef163,994,919 - 64,010,490 (+)NCBIHuRef
CHM1_1166,002,402 - 66,017,961 (+)NCBICHM1_1
T2T-CHM13v2.0165,298,645 - 65,313,980 (+)NCBIT2T-CHM13v2.0
Leprot
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394101,504,922 - 101,516,561 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4101,504,915 - 101,516,561 (+)EnsemblGRCm39 Ensembl
GRCm384101,647,783 - 101,659,364 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4101,647,718 - 101,659,364 (+)EnsemblGRCm38mm10GRCm38
MGSCv374101,320,388 - 101,331,963 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364101,145,715 - 101,157,290 (+)NCBIMGSCv36mm8
Celera499,991,445 - 100,003,279 (+)NCBICelera
Cytogenetic Map4C6NCBI
cM Map446.94NCBI
Leprot
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85121,405,170 - 121,417,273 (+)NCBIGRCr8
mRatBN7.25116,289,843 - 116,301,951 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5116,289,822 - 116,301,988 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5118,843,206 - 118,855,255 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05120,568,549 - 120,580,598 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05120,619,872 - 120,631,921 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05120,498,910 - 120,511,011 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5120,498,883 - 120,511,017 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05124,375,762 - 124,388,211 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45122,315,510 - 122,327,920 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15122,320,735 - 122,333,144 (+)NCBI
Celera5114,812,690 - 114,824,765 (+)NCBICelera
Cytogenetic Map5q33NCBI
Leprot
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542325,250,879 - 25,265,437 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542325,250,873 - 25,265,437 (-)NCBIChiLan1.0ChiLan1.0
LEPROT
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21161,428,066 - 161,441,332 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11160,578,889 - 160,592,084 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0164,668,316 - 64,682,016 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1166,556,116 - 66,571,584 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl166,556,116 - 66,571,584 (+)Ensemblpanpan1.1panPan2
LEPROT
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1544,859,886 - 44,877,144 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl544,845,581 - 44,877,144 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha544,919,006 - 44,933,888 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0545,040,707 - 45,057,698 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl545,025,555 - 45,057,074 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1545,008,221 - 45,023,125 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0544,952,714 - 44,967,630 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0545,203,553 - 45,218,585 (-)NCBIUU_Cfam_GSD_1.0
Leprot
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505878,525,017 - 78,535,338 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366922,840,332 - 2,894,726 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366922,840,461 - 2,850,756 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LEPROT
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6146,974,639 - 146,987,242 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16146,974,641 - 146,987,261 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26135,379,853 - 135,392,472 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LEPROT
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12067,643,371 - 67,655,995 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2067,639,280 - 67,655,900 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603349,901,380 - 49,914,739 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Leprot
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474229,381,079 - 29,393,411 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474229,378,770 - 29,393,354 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in LEPROT
16 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 1p32.1-31.1(chr1:60473800-70944955)x1 copy number loss See cases [RCV000050703] Chr1:60473800..70944955 [GRCh38]
Chr1:60939472..71410638 [GRCh37]
Chr1:60712060..71183226 [NCBI36]
Chr1:1p32.1-31.1		 pathogenic
GRCh38/hg38 1p32.3-31.1(chr1:52595352-76767765)x3 copy number gain See cases [RCV000051822] Chr1:52595352..76767765 [GRCh38]
Chr1:53061024..77233450 [GRCh37]
Chr1:52833612..77006038 [NCBI36]
Chr1:1p32.3-31.1		 pathogenic
GRCh38/hg38 1p31.3(chr1:61922650-66445757)x3 copy number gain See cases [RCV000051824] Chr1:61922650..66445757 [GRCh38]
Chr1:62388322..66911440 [GRCh37]
Chr1:62160910..66684028 [NCBI36]
Chr1:1p31.3		 pathogenic
GRCh38/hg38 1p32.2-31.1(chr1:57350574-71325924)x1 copy number loss See cases [RCV000053841] Chr1:57350574..71325924 [GRCh38]
Chr1:57816246..71791607 [GRCh37]
Chr1:57588834..71564195 [NCBI36]
Chr1:1p32.2-31.1		 pathogenic
GRCh38/hg38 1p32.1-31.1(chr1:59632500-76730877)x1 copy number loss See cases [RCV000053842] Chr1:59632500..76730877 [GRCh38]
Chr1:60098172..77196562 [GRCh37]
Chr1:59870760..76969150 [NCBI36]
Chr1:1p32.1-31.1		 pathogenic
GRCh38/hg38 1p32.1-31.1(chr1:59760856-71578052)x1 copy number loss See cases [RCV000133710] Chr1:59760856..71578052 [GRCh38]
Chr1:60226528..72043735 [GRCh37]
Chr1:59999116..71816323 [NCBI36]
Chr1:1p32.1-31.1		 pathogenic
GRCh38/hg38 1p32.1-31.2(chr1:58819605-69107108)x1 copy number loss See cases [RCV000134142] Chr1:58819605..69107108 [GRCh38]
Chr1:59285277..69572791 [GRCh37]
Chr1:59057865..69345379 [NCBI36]
Chr1:1p32.1-31.2		 pathogenic
GRCh38/hg38 1p32.1-22.3(chr1:58819605-86098611)x1 copy number loss See cases [RCV000136913] Chr1:58819605..86098611 [GRCh38]
Chr1:59285277..86564294 [GRCh37]
Chr1:59057865..86336882 [NCBI36]
Chr1:1p32.1-22.3		 pathogenic
GRCh38/hg38 1p31.3(chr1:65395820-65473801)x3 copy number gain See cases [RCV000140074] Chr1:65395820..65473801 [GRCh38]
Chr1:65861503..65939484 [GRCh37]
Chr1:65634091..65712072 [NCBI36]
Chr1:1p31.3		 likely benign
GRCh38/hg38 1p31.3(chr1:64944525-67592003)x1 copy number loss See cases [RCV000140906] Chr1:64944525..67592003 [GRCh38]
Chr1:65410208..68057686 [GRCh37]
Chr1:65182796..67830274 [NCBI36]
Chr1:1p31.3		 likely pathogenic|uncertain significance
GRCh38/hg38 1p32.3-31.3(chr1:52787503-67339873)x3 copy number gain See cases [RCV000141758] Chr1:52787503..67339873 [GRCh38]
Chr1:53253175..67805556 [GRCh37]
Chr1:53025763..67578144 [NCBI36]
Chr1:1p32.3-31.3		 likely pathogenic
GRCh38/hg38 1p31.3-31.1(chr1:64072618-75518432)x3 copy number gain See cases [RCV000142452] Chr1:64072618..75518432 [GRCh38]
Chr1:64538290..75984117 [GRCh37]
Chr1:64310878..75756705 [NCBI36]
Chr1:1p31.3-31.1		 pathogenic
GRCh37/hg19 1p36.12-12(chr1:20608823-120546301)x3 copy number loss not provided [RCV000762767] Chr1:20608823..120546301 [GRCh37]
Chr1:1p36.12-12		 likely benign
NM_002303.6(LEPR):c.-161C>T single nucleotide variant Monogenic Non-Syndromic Obesity [RCV000280221]|Obesity due to leptin receptor gene deficiency [RCV000372396] Chr1:65420676 [GRCh38]
Chr1:65886359 [GRCh37]
Chr1:1p31.3		 uncertain significance
NM_017526.5(LEPROT):c.21C>T (p.Leu7=) single nucleotide variant Monogenic Non-Syndromic Obesity [RCV000397005]|Obesity due to leptin receptor gene deficiency [RCV000315592]|not provided [RCV000953426] Chr1:65425307 [GRCh38]
Chr1:65890990 [GRCh37]
Chr1:1p31.3		 benign|likely benign|uncertain significance
NM_002303.6(LEPR):c.-122T>C single nucleotide variant Monogenic Non-Syndromic Obesity [RCV000396999]|Obesity due to leptin receptor gene deficiency [RCV000337663]|not provided [RCV004713701] Chr1:65420715 [GRCh38]
Chr1:65886398 [GRCh37]
Chr1:1p31.3		 benign
NM_002303.6(LEPR):c.-120C>T single nucleotide variant Monogenic Non-Syndromic Obesity [RCV000311543]|Obesity due to leptin receptor gene deficiency [RCV000350019] Chr1:65420717 [GRCh38]
Chr1:65886400 [GRCh37]
Chr1:1p31.3		 uncertain significance
GRCh37/hg19 1p31.3(chr1:65881068-65939484)x3 copy number gain See cases [RCV000446481] Chr1:65881068..65939484 [GRCh37]
Chr1:1p31.3		 benign
GRCh37/hg19 1p31.3-31.1(chr1:63252828-77402595)x1 copy number loss See cases [RCV000446378] Chr1:63252828..77402595 [GRCh37]
Chr1:1p31.3-31.1		 pathogenic
GRCh37/hg19 1p31.3(chr1:61785602-67430956)x3 copy number gain See cases [RCV000446769] Chr1:61785602..67430956 [GRCh37]
Chr1:1p31.3		 pathogenic
GRCh37/hg19 1p31.3-22.3(chr1:64321264-88153669)x1 copy number loss See cases [RCV000511392] Chr1:64321264..88153669 [GRCh37]
Chr1:1p31.3-22.3		 pathogenic|uncertain significance
GRCh37/hg19 1p36.33-q44(chr1:849467-249224684) copy number gain See cases [RCV000510926] Chr1:849467..249224684 [GRCh37]
Chr1:1p36.33-q44		 pathogenic
GRCh37/hg19 1p31.3-31.1(chr1:61351024-79583933)x1 copy number loss See cases [RCV000512152] Chr1:61351024..79583933 [GRCh37]
Chr1:1p31.3-31.1		 pathogenic
GRCh37/hg19 1p31.3(chr1:64848307-67436595)x1 copy number loss not provided [RCV000684581] Chr1:64848307..67436595 [GRCh37]
Chr1:1p31.3		 uncertain significance
GRCh37/hg19 1p31.3-31.1(chr1:62434799-71656180)x3 copy number gain not provided [RCV000684577] Chr1:62434799..71656180 [GRCh37]
Chr1:1p31.3-31.1		 pathogenic
GRCh37/hg19 1p36.33-q44(chr1:82154-249218992)x3 copy number gain not provided [RCV000736305] Chr1:82154..249218992 [GRCh37]
Chr1:1p36.33-q44		 pathogenic
GRCh37/hg19 1p31.3(chr1:65854556-65957141)x3 copy number gain not provided [RCV000749016] Chr1:65854556..65957141 [GRCh37]
Chr1:1p31.3		 benign
GRCh37/hg19 1p31.3(chr1:65854556-65966503)x3 copy number gain not provided [RCV000749017] Chr1:65854556..65966503 [GRCh37]
Chr1:1p31.3		 benign
GRCh37/hg19 1p31.3(chr1:65858088-65952781)x3 copy number gain not provided [RCV000749018] Chr1:65858088..65952781 [GRCh37]
Chr1:1p31.3		 benign
NM_002303.6(LEPR):c.-21+122T>A single nucleotide variant not provided [RCV001610962] Chr1:65425500 [GRCh38]
Chr1:65891183 [GRCh37]
Chr1:1p31.3		 benign
GRCh37/hg19 1p36.22-21.1(chr1:103343285-103455144)x3 copy number gain Global developmental delay [RCV000787285] Chr1:103343285..103455144 [GRCh37]
Chr1:1p36.22-21.1		 uncertain significance
GRCh37/hg19 1p31.3(chr1:65853698-65965376)x3 copy number gain not provided [RCV000848119] Chr1:65853698..65965376 [GRCh37]
Chr1:1p31.3		 uncertain significance
GRCh37/hg19 1p31.3(chr1:65853698-65952922)x3 copy number gain not provided [RCV000848435] Chr1:65853698..65952922 [GRCh37]
Chr1:1p31.3		 uncertain significance
GRCh37/hg19 1p31.3(chr1:65853698-65969430)x3 copy number gain not provided [RCV000846833] Chr1:65853698..65969430 [GRCh37]
Chr1:1p31.3		 uncertain significance
NM_002303.6(LEPR):c.-51T>G single nucleotide variant Obesity due to leptin receptor gene deficiency [RCV001098271] Chr1:65425348 [GRCh38]
Chr1:65891031 [GRCh37]
Chr1:1p31.3		 uncertain significance
NM_002303.6(LEPR):c.-162C>A single nucleotide variant Obesity due to leptin receptor gene deficiency [RCV001096529] Chr1:65420675 [GRCh38]
Chr1:65886358 [GRCh37]
Chr1:1p31.3		 uncertain significance
Single allele deletion Intellectual disability, severe [RCV000824954] Chr1:59922631..72058653 [GRCh37]
Chr1:1p32.1-31.1		 pathogenic
NC_000001.10:g.(?_65299551)_(67861772_?)del deletion not provided [RCV003107630] Chr1:65299551..67861772 [GRCh37]
Chr1:1p31.3		 pathogenic
NM_017526.5(LEPROT):c.16+700G>A single nucleotide variant not provided [RCV000898937] Chr1:65421440 [GRCh38]
Chr1:65887123 [GRCh37]
Chr1:1p31.3		 likely benign
GRCh37/hg19 1p32.3-31.3(chr1:53675707-66644963)x1 copy number loss Chromosome 1p32-p31 deletion syndrome [RCV001263218] Chr1:53675707..66644963 [GRCh37]
Chr1:1p32.3-31.3		 pathogenic
GRCh37/hg19 1p31.3-31.2(chr1:65125111-69186543) copy number gain not specified [RCV002053380] Chr1:65125111..69186543 [GRCh37]
Chr1:1p31.3-31.2		 uncertain significance
NC_000001.10:g.(?_61548464)_(67861772_?)del deletion not provided [RCV003116397] Chr1:61548464..67861772 [GRCh37]
Chr1:1p31.3		 pathogenic
NM_017526.5(LEPROT):c.230T>C (p.Ile77Thr) single nucleotide variant not specified [RCV004156365] Chr1:65429999 [GRCh38]
Chr1:65895682 [GRCh37]
Chr1:1p31.3		 uncertain significance
NM_017526.5(LEPROT):c.22G>A (p.Val8Met) single nucleotide variant not specified [RCV004080233] Chr1:65425308 [GRCh38]
Chr1:65890991 [GRCh37]
Chr1:1p31.3		 uncertain significance
NM_017526.5(LEPROT):c.94G>A (p.Val32Ile) single nucleotide variant not specified [RCV004090410] Chr1:65429863 [GRCh38]
Chr1:65895546 [GRCh37]
Chr1:1p31.3		 uncertain significance
NM_017526.5(LEPROT):c.199C>T (p.Arg67Trp) single nucleotide variant not specified [RCV004343181] Chr1:65429968 [GRCh38]
Chr1:65895651 [GRCh37]
Chr1:1p31.3		 uncertain significance
NC_000001.10:g.(?_61548464)_(67861772_?)dup duplication PGM1-congenital disorder of glycosylation [RCV004584077] Chr1:61548464..67861772 [GRCh37]
Chr1:1p31.3		 uncertain significance
NM_017526.5(LEPROT):c.112G>A (p.Val38Ile) single nucleotide variant not specified [RCV004642360] Chr1:65429881 [GRCh38]
Chr1:65895564 [GRCh37]
Chr1:1p31.3		 uncertain significance
GRCh37/hg19 1p36.33-q44(chr1:47851-249228449)x3 copy number gain not provided [RCV000736295] Chr1:47851..249228449 [GRCh37]
Chr1:1p36.33-q44		 pathogenic
GRCh37/hg19 1p36.33-q44(chr1:849467-249224684)x3 copy number gain See cases [RCV000510383] Chr1:849467..249224684 [GRCh37]
Chr1:1p36.33-q44		 pathogenic
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2195
Count of miRNA genes:1011
Interacting mature miRNAs:1218
Transcripts:ENST00000371065, ENST00000475108, ENST00000484243, ENST00000488747, ENST00000497874
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2314561GLUCO47_HGlucose level QTL 47 (human)1.1Glucose level14477336070773360Human
1578602LDLPS21_HLow density lipoprotein particle size QTL 21 (human)2.050.00037LDL particle size15253110578531105Human
1578620LDLPS20_HLow density lipoprotein particle size QTL 21 (human)2.040.00046LDL particle size15253110578531105Human
407069109GWAS718085_Hlongitudinal BMI measurement QTL GWAS718085 (human)8e-09longitudinal BMI measurementbody mass index (BMI) (CMO:0000105)16543099165430992Human
407226275GWAS875251_HC-reactive protein measurement QTL GWAS875251 (human)8e-28C-reactive protein measurementblood C-reactive protein level (CMO:0003160)16543566265435663Human
407310974GWAS959950_HC-reactive protein measurement QTL GWAS959950 (human)7e-19C-reactive protein measurementblood C-reactive protein level (CMO:0003160)16542254865422549Human
1578594LDLPS19_HLow density lipoprotein particle size QTL 19 (human)2.560.00009LDL particle size15253110578531105Human
407174735GWAS823711_Hnon-alcoholic steatohepatitis QTL GWAS823711 (human)4e-09non-alcoholic steatohepatitis16542847765428478Human
407145256GWAS794232_HBMI-adjusted waist-hip ratio QTL GWAS794232 (human)7e-08BMI-adjusted waist-hip ratio16542720565427206Human
407139977GWAS788953_Hcomplex trait QTL GWAS788953 (human)3e-12complex trait16542944765429448Human

Markers in Region
SHGC-74954  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37165,899,258 - 65,899,359UniSTSGRCh37
Build 36165,671,846 - 65,671,947RGDNCBI36
Celera164,189,842 - 64,189,943RGD
Cytogenetic Map1p31UniSTS
Cytogenetic Map1p31.3UniSTS
HuRef164,008,058 - 64,008,159UniSTS
TNG Radiation Hybrid Map190960.0UniSTS
GeneMap99-GB4 RH Map1174.74UniSTS
NCBI RH Map1434.7UniSTS
SHGC-74936  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37165,895,163 - 65,895,292UniSTSGRCh37
Build 36165,667,751 - 65,667,880RGDNCBI36
Celera164,185,747 - 64,185,876RGD
Cytogenetic Map1p31UniSTS
Cytogenetic Map1p31.3UniSTS
HuRef164,003,963 - 64,004,092UniSTS
TNG Radiation Hybrid Map190964.0UniSTS
GeneMap99-GB4 RH Map1173.9UniSTS
RH80929  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37165,898,663 - 65,898,902UniSTSGRCh37
Build 36165,671,251 - 65,671,490RGDNCBI36
Celera164,189,247 - 64,189,486RGD
Cytogenetic Map1p31UniSTS
Cytogenetic Map1p31.3UniSTS
HuRef164,007,463 - 64,007,702UniSTS
GeneMap99-GB4 RH Map1174.59UniSTS
RH102615  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37165,901,362 - 65,901,534UniSTSGRCh37
Build 36165,673,950 - 65,674,122RGDNCBI36
Celera164,191,946 - 64,192,118RGD
Cytogenetic Map1p31UniSTS
Cytogenetic Map1p31.3UniSTS
HuRef164,010,162 - 64,010,334UniSTS
GeneMap99-GB4 RH Map1173.9UniSTS
G62073  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37165,898,818 - 65,898,947UniSTSGRCh37
Build 36165,671,406 - 65,671,535RGDNCBI36
Celera164,189,402 - 64,189,531RGD
Cytogenetic Map1p31UniSTS
Cytogenetic Map1p31.3UniSTS
HuRef164,007,618 - 64,007,747UniSTS
RH68452  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37165,898,137 - 65,898,288UniSTSGRCh37
Build 36165,670,725 - 65,670,876RGDNCBI36
Celera164,188,721 - 64,188,872RGD
Cytogenetic Map1p31UniSTS
Cytogenetic Map1p31.3UniSTS
HuRef164,006,937 - 64,007,088UniSTS
GeneMap99-GB4 RH Map1173.9UniSTS
OBRGRP_2328  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37165,897,617 - 65,898,316UniSTSGRCh37
Build 36165,670,205 - 65,670,904RGDNCBI36
Celera164,188,201 - 64,188,900RGD
HuRef164,006,417 - 64,007,116UniSTS
G20438  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37165,898,003 - 65,898,177UniSTSGRCh37
Build 36165,670,591 - 65,670,765RGDNCBI36
Celera164,188,587 - 64,188,761RGD
Cytogenetic Map1p31UniSTS
Cytogenetic Map1p31.3UniSTS
HuRef164,006,803 - 64,006,977UniSTS
A005R18  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37165,898,003 - 65,898,177UniSTSGRCh37
Build 36165,670,591 - 65,670,765RGDNCBI36
Celera164,188,587 - 64,188,761RGD
Cytogenetic Map1p31UniSTS
Cytogenetic Map1p31.3UniSTS
HuRef164,006,803 - 64,006,977UniSTS
TNG Radiation Hybrid Map191020.0UniSTS
GeneMap99-GB4 RH Map1173.9UniSTS
NCBI RH Map1434.7UniSTS
SHGC-32733  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37165,897,327 - 65,897,452UniSTSGRCh37
Build 36165,669,915 - 65,670,040RGDNCBI36
Celera164,187,911 - 64,188,036RGD
Cytogenetic Map1p31UniSTS
Cytogenetic Map1p31.3UniSTS
HuRef164,006,127 - 64,006,252UniSTS
TNG Radiation Hybrid Map190974.0UniSTS
Stanford-G3 RH Map13276.0UniSTS
GeneMap99-GB4 RH Map1175.7UniSTS
Whitehead-RH Map1202.3UniSTS
GeneMap99-G3 RH Map13282.0UniSTS
RH79027  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37165,897,925 - 65,898,062UniSTSGRCh37
Build 36165,670,513 - 65,670,650RGDNCBI36
Celera164,188,509 - 64,188,646RGD
Cytogenetic Map1p31UniSTS
Cytogenetic Map1p31.3UniSTS
HuRef164,006,725 - 64,006,862UniSTS
GeneMap99-GB4 RH Map1173.9UniSTS
L18426  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map18q12.1-q21.1UniSTS
Cytogenetic Map10q23.1UniSTS
Cytogenetic Map2q37UniSTS
Cytogenetic Map5q31.3UniSTS
Cytogenetic Map20q13.1UniSTS
Cytogenetic Map14q21UniSTS
Cytogenetic Map6p21.33UniSTS
Cytogenetic Map10p11UniSTS
Cytogenetic Map5q35.3UniSTS
Cytogenetic Map2q37.1UniSTS
Cytogenetic Map15q22.31UniSTS
Cytogenetic Map17q25.1UniSTS
Cytogenetic Map5q12.3UniSTS
Cytogenetic Map8p21.2UniSTS
Cytogenetic Map14q21.3UniSTS
Cytogenetic Map11q12.3UniSTS
Cytogenetic Map10p13UniSTS
Cytogenetic Map3q13.31UniSTS
Cytogenetic Map15q22.2UniSTS
Cytogenetic Map4p16.3UniSTS
Cytogenetic Map17q25.3UniSTS
Cytogenetic Map1q21UniSTS
Cytogenetic Map3q21.3UniSTS
Cytogenetic Map9p13.2UniSTS
Cytogenetic Map20q13.12UniSTS
Cytogenetic Map9q34.1UniSTS
Cytogenetic Map1q21.3UniSTS
Cytogenetic Map1p22.1UniSTS
Cytogenetic Map19q13.31UniSTS
Cytogenetic Map22q11.23UniSTS
Cytogenetic Map19p13.1-p12UniSTS
Cytogenetic Map18p11.31-p11.21UniSTS
Cytogenetic Map2p23.1UniSTS
Cytogenetic Map19q13.43UniSTS
Cytogenetic Map6q25.3UniSTS
Cytogenetic Map1p34.3UniSTS
Cytogenetic Map11q14UniSTS
Cytogenetic Map9q21.32UniSTS
Cytogenetic Map1p34-p33UniSTS
Cytogenetic Map3q23UniSTS
Cytogenetic Map17q21.1UniSTS
Cytogenetic Map15q21UniSTS
Cytogenetic Map6p21.3UniSTS
Cytogenetic Map2q12.3UniSTS
Cytogenetic Map20q11.2-q13.2UniSTS
Cytogenetic Map15q26.3UniSTS
Cytogenetic Map8p23-p22UniSTS
Cytogenetic Map13q32.3UniSTS
Cytogenetic Map17q21-q22UniSTS
Cytogenetic Map2q36.1UniSTS
Cytogenetic Map5p13UniSTS
Cytogenetic Map5p12UniSTS
Cytogenetic Map12q21.1UniSTS
Cytogenetic Map3q26.32UniSTS
Cytogenetic Map13q11UniSTS
Cytogenetic Map1p35.3UniSTS
Cytogenetic Map7p12.3UniSTS
Cytogenetic Map17p12UniSTS
Cytogenetic Map17q11.2UniSTS
Cytogenetic Map13q14.11UniSTS
Cytogenetic Map3p25.1UniSTS
Cytogenetic MapXp22UniSTS
Cytogenetic Map21q22.3UniSTS
Cytogenetic Map17q11.2-q12UniSTS
Cytogenetic Map11q23.3UniSTS
Cytogenetic Map2p25UniSTS
Cytogenetic Map11q13UniSTS
Cytogenetic Map8p11.22UniSTS
Cytogenetic Map7p22UniSTS
Cytogenetic Map16q21UniSTS
Cytogenetic Map1p21.3UniSTS
Cytogenetic Map19q13.13UniSTS
Cytogenetic Map4q22.1UniSTS
Cytogenetic Map1p13.3UniSTS
Cytogenetic Map20q13.3UniSTS
Cytogenetic Map7q36.3UniSTS
Cytogenetic Map2q33.2UniSTS
Cytogenetic Map6p22.3-p22.1UniSTS
Cytogenetic Map1p35-p34.3UniSTS
Cytogenetic Map5q35.1UniSTS
Cytogenetic Map1p36.13UniSTS
Cytogenetic Map12p13.3UniSTS
Cytogenetic Map7q22UniSTS
Cytogenetic Map2q11.2UniSTS
Cytogenetic Map2p23.3UniSTS
Cytogenetic MapXp11UniSTS
Cytogenetic Map19q13UniSTS
Cytogenetic Map2q32.3UniSTS
Cytogenetic Map4q22.1-q23UniSTS
Cytogenetic Map1q22UniSTS
Cytogenetic Map17q22-q23.2UniSTS
Cytogenetic Map17q22UniSTS
Cytogenetic Map18q22.3UniSTS
Cytogenetic Map2p16.1UniSTS
Cytogenetic Map12q24.1-q24.3UniSTS
Cytogenetic Map11p11.2UniSTS
Cytogenetic Map1p34.1UniSTS
Cytogenetic Map22q13UniSTS
Cytogenetic Map12q22UniSTS
Cytogenetic Map19q13.2UniSTS
Cytogenetic Map11q24.2UniSTS
Cytogenetic MapXq22.3UniSTS
Cytogenetic Map3q13.13UniSTS
Cytogenetic Map12q24.31UniSTS
Cytogenetic Map3q27.3UniSTS
Cytogenetic Map17q21.32UniSTS
Cytogenetic Map2q35UniSTS
Cytogenetic Map9p24.2UniSTS
Cytogenetic Map14q32.11UniSTS
Cytogenetic Map2q21.1UniSTS
Cytogenetic Map15q23UniSTS
Cytogenetic Map16q22.2UniSTS
Cytogenetic Map7q22.1UniSTS
Cytogenetic Map3p22.1UniSTS
Cytogenetic Map19q13.33UniSTS
Cytogenetic Map3p14.3UniSTS
Cytogenetic Map1p36.21UniSTS
Cytogenetic Map1p31.3UniSTS
Cytogenetic Map12p12UniSTS
Cytogenetic Map6p21.1UniSTS
Cytogenetic Map6p25UniSTS
Cytogenetic Map16p11.2UniSTS
Cytogenetic Map14q23UniSTS
Cytogenetic Map1q42.1-q43UniSTS
Cytogenetic Map5q31.1UniSTS
Cytogenetic Map1p32UniSTS
Cytogenetic Map12q12UniSTS
Cytogenetic Map6q25.1-q26UniSTS
Cytogenetic Map5q13UniSTS
Cytogenetic Map12q13.11-q14.3UniSTS
Cytogenetic Map7p11UniSTS
Cytogenetic Map3p21.31UniSTS
Cytogenetic Map17q23.1UniSTS
Cytogenetic MapXq13-q21UniSTS
Cytogenetic Map16p12.2UniSTS
Cytogenetic Map10q22.1UniSTS
Cytogenetic Map1q41UniSTS
Cytogenetic Map17p13.1UniSTS
Cytogenetic Map12p13.2UniSTS
Cytogenetic Map3q28-q29UniSTS
Cytogenetic Map7q11.21UniSTS
Cytogenetic Map1q41-q42.2UniSTS
Cytogenetic Map12q24.2-q24.31UniSTS
Cytogenetic Map8q24.3UniSTS
Cytogenetic Map11p11.11UniSTS
Cytogenetic Map11q22-q23UniSTS
Cytogenetic Map3q21UniSTS
Cytogenetic Map1q43UniSTS
Cytogenetic Map1p13.2UniSTS
Cytogenetic Map15q25.2UniSTS
Cytogenetic Map10q11.21UniSTS
Cytogenetic Map17q23.3UniSTS
Cytogenetic Map8q11.2UniSTS
Cytogenetic Map15q11-q13UniSTS
Cytogenetic Map13q12-q14UniSTS
Cytogenetic Map18q21.1UniSTS
Cytogenetic Map2p21UniSTS
Cytogenetic Map22q13.31UniSTS
Cytogenetic Map14q24.1UniSTS
Cytogenetic Map1p36.11UniSTS
Cytogenetic Map19q13.12UniSTS
Cytogenetic Map6p25.2UniSTS
Cytogenetic Map1q44UniSTS
Cytogenetic Map19q13.42UniSTS
Cytogenetic Map19p13.2UniSTS
Cytogenetic Map17p13.2UniSTS
Cytogenetic Map10q26.3UniSTS
Cytogenetic Map13q32.2UniSTS
Cytogenetic Map5q11.2UniSTS
Cytogenetic Map11p15.1UniSTS
Cytogenetic Map11q24UniSTS
Cytogenetic Map2q23.3UniSTS
Cytogenetic Map1p31.1UniSTS
Cytogenetic Map10q25.3UniSTS
Cytogenetic Map14q31UniSTS
Cytogenetic Map8p12-p11UniSTS
Cytogenetic Map11p15.4UniSTS
Cytogenetic Map8p11.2UniSTS
Cytogenetic Map7p11.2UniSTS
Cytogenetic MapXq28UniSTS
Cytogenetic Map15q26.1UniSTS
Cytogenetic Map7p15.3UniSTS
Cytogenetic Map17q23.2UniSTS
Cytogenetic MapXq25UniSTS
Cytogenetic Map21q22.1UniSTS
Cytogenetic Map4q25-q27UniSTS
Cytogenetic Map3q25.33UniSTS
Cytogenetic Map3q25.31UniSTS
Cytogenetic Map1p34.2UniSTS
Cytogenetic Map1p36.22UniSTS
Cytogenetic Map16q22.1UniSTS
Cytogenetic MapXp22.33UniSTS
Cytogenetic MapYp11.3UniSTS
Cytogenetic Map19q13.1UniSTS
Cytogenetic Map3p22-p21.3UniSTS
Cytogenetic Map2p15-p13UniSTS
Cytogenetic MapXp11.4UniSTS
Cytogenetic Map20p11UniSTS
Cytogenetic Map3p14.1UniSTS
Cytogenetic Map1q25.2UniSTS
Cytogenetic Map13q11-q12UniSTS
Cytogenetic Map9q34UniSTS
Cytogenetic Map7q21.13UniSTS
Cytogenetic Map20q13.33UniSTS
Cytogenetic Map9q33.3UniSTS
Cytogenetic Map11q13.1UniSTS
Cytogenetic Map3q12UniSTS
Cytogenetic Map2p25.1-p24.1UniSTS
Cytogenetic Map16p13.11UniSTS
Cytogenetic Map6q16.1UniSTS
Cytogenetic Map13q14.13UniSTS
Cytogenetic Map5p13.1UniSTS
Cytogenetic Map4q28-q32UniSTS
Cytogenetic Map11p15UniSTS
Cytogenetic Map1p35.1UniSTS
Cytogenetic Map1p32-p31UniSTS
Cytogenetic Map1p21UniSTS
Cytogenetic Map7p14.2UniSTS
Cytogenetic Map6q25UniSTS
Cytogenetic Map5q31UniSTS
Cytogenetic Map18p11.22UniSTS
Cytogenetic Map9p24.3UniSTS
Cytogenetic Map2p25.3UniSTS
Cytogenetic Map1q42.3UniSTS
Cytogenetic Map1q22-q23UniSTS
Cytogenetic Map4q21.22UniSTS
Cytogenetic Map13q14.2UniSTS
Cytogenetic Map2q24.3UniSTS
Cytogenetic Map7p22.1UniSTS
Cytogenetic Map9q31-q33UniSTS
Cytogenetic Map11q13.4UniSTS
Cytogenetic Map10p11.21UniSTS
Cytogenetic Map9q32UniSTS
Cytogenetic Map3q21.1UniSTS
Cytogenetic Map10q11.23UniSTS
Cytogenetic Map9q22.1-q22.2UniSTS
Cytogenetic Map4q26UniSTS
Cytogenetic Map4q28.1UniSTS
Cytogenetic Map9q31.3UniSTS
Cytogenetic Map6p22.3UniSTS
Cytogenetic Map21q21.1UniSTS
Cytogenetic Map19q13.32UniSTS
Cytogenetic Map18q11.2UniSTS
Cytogenetic Map17q21.31UniSTS
Cytogenetic Map15q26.2UniSTS
Cytogenetic Map14q22.1UniSTS
Cytogenetic Map12p12.3UniSTS
Cytogenetic Map12q13.12UniSTS
Cytogenetic Map20q11.23UniSTS
Cytogenetic Map12q13.11UniSTS
Cytogenetic Map9p13.3UniSTS
Cytogenetic Map11q13.2UniSTS
Cytogenetic Map12q14.3UniSTS
Cytogenetic Map5q33.3UniSTS
Cytogenetic Map5p13.2UniSTS
Cytogenetic Map4q35.2UniSTS
Cytogenetic Map4q28.2UniSTS
Cytogenetic Map16q24.1UniSTS
Cytogenetic Map12q23.1UniSTS
Cytogenetic Map11q24.3UniSTS
Cytogenetic Map10q24.32UniSTS
Cytogenetic Map10q22.2UniSTS
Cytogenetic Map20p13UniSTS
Cytogenetic Map6q25.1UniSTS
Cytogenetic Map20q13.2UniSTS
Cytogenetic Map8q23.3UniSTS
Cytogenetic Map16q23.2UniSTS
Cytogenetic Map3p22.2UniSTS
Cytogenetic MapXp21.1UniSTS
Cytogenetic Map7p14.3UniSTS
Cytogenetic MapXp11.23UniSTS
Cytogenetic Map14q32.31UniSTS
Cytogenetic Map5p15.3UniSTS
Cytogenetic Map15q21.2UniSTS
Cytogenetic Map22q12UniSTS
Cytogenetic Map4q22UniSTS
Cytogenetic Map2p13.1UniSTS
Cytogenetic Map19q13.1-q13.2UniSTS
Cytogenetic Map1p36.3UniSTS
Cytogenetic Map17q21UniSTS
Cytogenetic Map2q32.1UniSTS
Cytogenetic Map7q31.3UniSTS
Cytogenetic Map5q33.1UniSTS
Cytogenetic Map13q13.1UniSTS
Cytogenetic Map8p23.1UniSTS
Cytogenetic Map15qUniSTS
Cytogenetic Map3p26UniSTS
Cytogenetic Map1p13-p12UniSTS
Cytogenetic Map21q22.11UniSTS
Cytogenetic Map14q32.2UniSTS
Cytogenetic Map15q24.1UniSTS
Cytogenetic Map4p16.1UniSTS
Cytogenetic Map15q11.2UniSTS
Cytogenetic Map3p25.2UniSTS
Cytogenetic Map7p22.3UniSTS
Cytogenetic Map10q21.1UniSTS
Cytogenetic Map6q21UniSTS
Cytogenetic Map21q22.2UniSTS
Cytogenetic Map1q23.3UniSTS
Cytogenetic Map1p36UniSTS
Cytogenetic Map1q25UniSTS
Cytogenetic Map15q24UniSTS
Cytogenetic Map3p25.3UniSTS
Cytogenetic Map2q22.3UniSTS
Cytogenetic Map20p11.21UniSTS
Cytogenetic Map12q24.1UniSTS
Cytogenetic Map5q31.2UniSTS
Cytogenetic Map2p25.2UniSTS
Cytogenetic Map17p11.2UniSTS
Cytogenetic Map19q13.3UniSTS
Cytogenetic Map22q13.33UniSTS
Cytogenetic Map2p25.1UniSTS
Cytogenetic Map4q12UniSTS
Cytogenetic Map1q12UniSTS
Cytogenetic Map22q11.22UniSTS
Cytogenetic Map20q11.22UniSTS
Cytogenetic Map8p21.3UniSTS
Cytogenetic Map14q32.3UniSTS
Cytogenetic Map7q32UniSTS
Cytogenetic Map5q14.1UniSTS
Cytogenetic Map12q13.13UniSTS
Cytogenetic Map14q23.3UniSTS
Cytogenetic Map1q24UniSTS
Cytogenetic Map7p13UniSTS
Cytogenetic Map17q25UniSTS
Cytogenetic Map22q11.21UniSTS
Cytogenetic Map5p15.33UniSTS
Cytogenetic Map3q29UniSTS
Cytogenetic Map9q34.3UniSTS
Cytogenetic Map16p13.13-p13.12UniSTS
Cytogenetic Map12p13.31UniSTS
Cytogenetic Map14q24.3UniSTS
Cytogenetic Map3q27UniSTS
Cytogenetic Map6q22UniSTS
Cytogenetic Map10p15.3UniSTS
Cytogenetic Map22q13.2UniSTS
Cytogenetic Map15q15UniSTS
Cytogenetic Map1p13.1UniSTS
Cytogenetic Map19p12UniSTS
Cytogenetic Map16q13UniSTS
Cytogenetic Map9q34.11UniSTS
Cytogenetic Map13q34UniSTS
Cytogenetic Map2p11.2UniSTS
Cytogenetic Map13q14.3UniSTS
Cytogenetic Map14q24UniSTS
Cytogenetic Map14q22-q24UniSTS
Cytogenetic Map19p13UniSTS
Cytogenetic Map17p13.3UniSTS
Cytogenetic Map22q12.2UniSTS
Cytogenetic Map16q24UniSTS
Cytogenetic MapXp22.2UniSTS
Cytogenetic Map8q13.1UniSTS
Cytogenetic Map1p36.33UniSTS
Cytogenetic Map22q13.1UniSTS
Cytogenetic Map17q12UniSTS
Cytogenetic Map12p12.1UniSTS
Cytogenetic Map14q11.2UniSTS
Cytogenetic Map4q35.1UniSTS
Cytogenetic Map20q13.13UniSTS
Cytogenetic Map1p22UniSTS
Cytogenetic Map16p13.3UniSTS
Cytogenetic Map10q11UniSTS
Cytogenetic Map8p11.21UniSTS
Cytogenetic Map8q24.11UniSTS
Cytogenetic Map2q37.3UniSTS
Cytogenetic Map9q22.33UniSTS
Cytogenetic Map9q22.31UniSTS
Cytogenetic Map11p15.5UniSTS
Cytogenetic Map20q12UniSTS
Cytogenetic Map2q13UniSTS
Cytogenetic Map7q11.23UniSTS
Cytogenetic Map2p15UniSTS
Cytogenetic Map12q21.31UniSTS
Cytogenetic Map17p13UniSTS
Cytogenetic Map19q12UniSTS
Cytogenetic Map6p22.1UniSTS
Cytogenetic Map11q14.2UniSTS
Cytogenetic Map19p13.3UniSTS
Cytogenetic Map18p11.21UniSTS
Cytogenetic Map10q22UniSTS
Cytogenetic MapXq21.1UniSTS
Cytogenetic Map9p21.1UniSTS
D8S2279  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map21q22.12UniSTS
Cytogenetic Map15q13UniSTS
Cytogenetic Map9q32UniSTS
Cytogenetic Map15q22.3UniSTS
Cytogenetic Map17p12UniSTS
Cytogenetic Map21q21.3UniSTS
Cytogenetic Map3p22-p21.3UniSTS
Cytogenetic Map1q21.1UniSTS
Cytogenetic Map2q24.2UniSTS
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Cytogenetic Map8q11.2UniSTS
Cytogenetic Map3q28-q29UniSTS
Cytogenetic Map7p14-p13UniSTS
Cytogenetic Map12q24.2UniSTS
Cytogenetic Map6p22.2UniSTS
Cytogenetic Map7q22-qterUniSTS
Cytogenetic Map12q24.2-q24.31UniSTS
Cytogenetic MapXq13.1UniSTS
Cytogenetic Map6p25.2UniSTS
Cytogenetic Map1p21UniSTS
Cytogenetic Map1q32.2-q41UniSTS
Cytogenetic Map11q22-q23UniSTS
Cytogenetic Map3q26.33UniSTS
Cytogenetic Map12q23-q24.1UniSTS
Cytogenetic Map5p15.1-p14.3UniSTS
Cytogenetic Map16p13.11UniSTS
Cytogenetic Map6q22-q23UniSTS
Cytogenetic Map9p21UniSTS
Cytogenetic Map6p12.3UniSTS
Cytogenetic Map3p12.1UniSTS
Cytogenetic Map9q21.11UniSTS
Cytogenetic Map17q24.1UniSTS
Cytogenetic Map10q11.21UniSTS
Cytogenetic Map14q21UniSTS
Cytogenetic Map11p15UniSTS
Cytogenetic Map16q22UniSTS
Cytogenetic Map15q11-q13UniSTS
Cytogenetic Map13q12-q14UniSTS
Cytogenetic Map18q21.1UniSTS
Cytogenetic Map2q24UniSTS
Cytogenetic Map12p13UniSTS
Cytogenetic Map3q28UniSTS
Cytogenetic Map7q32.1UniSTS
Cytogenetic MapXq22.2UniSTS
Cytogenetic Map7p12.3UniSTS
Cytogenetic Map7p15.1UniSTS
Cytogenetic Map2q37.2UniSTS
Cytogenetic Map18q22.3UniSTS
Cytogenetic Map14q32.13UniSTS
Cytogenetic Map14q22.1UniSTS
Cytogenetic Map16p13.1UniSTS
Cytogenetic Map7q31.3UniSTS
Cytogenetic Map20q13.2-q13.3UniSTS
Cytogenetic Map1p21.2UniSTS
Cytogenetic Map9q21.33UniSTS
Cytogenetic Map14q32.2UniSTS
Cytogenetic Map13q13.3UniSTS
Cytogenetic Map10p12.31UniSTS
Cytogenetic Map22q11.1UniSTS
Cytogenetic Map5q33.2UniSTS
Cytogenetic Map13q32.2UniSTS
Cytogenetic Map14q23.1UniSTS
Cytogenetic Map8q21.2UniSTS
Cytogenetic Map2q24.1UniSTS
Cytogenetic Map10q26.13UniSTS
Cytogenetic Map2q23.3UniSTS
Cytogenetic Map19p13.1UniSTS
Cytogenetic Map15q14-q15UniSTS
Cytogenetic Map1q42.13UniSTS
Cytogenetic Map14q31UniSTS
Cytogenetic Map7p21.1UniSTS
Cytogenetic Map8p12-p11UniSTS
Cytogenetic Map18p11.2UniSTS
Cytogenetic Map7p11.1UniSTS
Cytogenetic Map1q31-q32UniSTS
Cytogenetic Map2q12UniSTS
Cytogenetic Map3p21.32UniSTS
Cytogenetic Map2p24.2UniSTS
Cytogenetic Map2q33-q34UniSTS
Cytogenetic Map6q24.1UniSTS
Cytogenetic Map4q22.1UniSTS
Cytogenetic Map15q13.3UniSTS
Cytogenetic Map10q26.11UniSTS
Cytogenetic Map7p15.3UniSTS
Cytogenetic Map10q23.33UniSTS
Cytogenetic Map12p12.1UniSTS
Cytogenetic Map7p13-p12UniSTS
Cytogenetic MapXq25UniSTS
Cytogenetic Map17q11-q21UniSTS
Cytogenetic Map12q23UniSTS
Cytogenetic Map6p24-p22.3UniSTS
Cytogenetic Map14q23.2UniSTS
Cytogenetic Map7q31.1-q31.2UniSTS
Cytogenetic Map8q22.2UniSTS
Cytogenetic Map15q21.2UniSTS
Cytogenetic Map3p26.1-p25.1UniSTS
Cytogenetic Map5q35UniSTS
Cytogenetic Map3q13.2UniSTS
Cytogenetic Map4p15.2UniSTS
Cytogenetic Map6q16.3UniSTS
Cytogenetic Map17q24-q25UniSTS
Cytogenetic MapXq12UniSTS
Cytogenetic MapXq27.1UniSTS
Cytogenetic Map8q12.3UniSTS
Cytogenetic Map5q21.2UniSTS
Cytogenetic Map5q15UniSTS
Cytogenetic Map5q35.1UniSTS
Cytogenetic Map4q13.3UniSTS
Cytogenetic Map4q35.2UniSTS
Cytogenetic Map3p26.1UniSTS
Cytogenetic Map3p11.1UniSTS
Cytogenetic Map17q21.2UniSTS
Cytogenetic Map2q21.2UniSTS
Cytogenetic Map19p13.13UniSTS
Cytogenetic Map18q12.3UniSTS
Cytogenetic Map18p11.3UniSTS
Cytogenetic Map17q11.1UniSTS
Cytogenetic Map15q25.1UniSTS
Cytogenetic Map13q12.3UniSTS
Cytogenetic Map12q23.2UniSTS
Cytogenetic Map12q12-q13UniSTS
Cytogenetic Map12q14UniSTS
Cytogenetic Map5q33.1UniSTS
Cytogenetic Map2q32-q34UniSTS
Cytogenetic Map16q22.3UniSTS
Cytogenetic Map2p15-p13UniSTS
Cytogenetic MapXp11.4UniSTS
Cytogenetic Map19q13.33-q13.41UniSTS
Cytogenetic Map20p11UniSTS
Cytogenetic Map6q23-q24UniSTS
Cytogenetic Map2p12UniSTS
Cytogenetic Map2p13UniSTS
Cytogenetic Map13q11-q12UniSTS
Cytogenetic Map6p12.3-p11.2UniSTS
Cytogenetic Map6q16.1-q16.3UniSTS
Cytogenetic Map22q11UniSTS
Cytogenetic Map7q31.2UniSTS
Cytogenetic Map10q21.3UniSTS
Cytogenetic Map3q25.2UniSTS
Cytogenetic Map3p21.1-p14.3UniSTS
Cytogenetic Map6p12.1UniSTS
Cytogenetic Map3q23-q24UniSTS
Cytogenetic Map3q12UniSTS
Cytogenetic Map7q11.1UniSTS
Cytogenetic Map3q22.3UniSTS
Cytogenetic Map7q21.3UniSTS
Cytogenetic Map4q31.1UniSTS
Cytogenetic Map22q12-q13UniSTS
Cytogenetic Map4q23UniSTS
Cytogenetic MapXp22.12UniSTS
Cytogenetic Map6q16.1UniSTS
Cytogenetic Map13q14.13UniSTS
Cytogenetic Map18q21.3UniSTS
Cytogenetic Map9q33.2UniSTS
Cytogenetic Map11q21UniSTS
Cytogenetic Map8q12UniSTS
Cytogenetic Map4q28-q32UniSTS
Cytogenetic Map17q24.3UniSTS
Cytogenetic Map6p23UniSTS
Cytogenetic Map8p11UniSTS
Cytogenetic Map5q34UniSTS
Cytogenetic Map1q24.3UniSTS
Cytogenetic Map9q33.1UniSTS
Cytogenetic Map1q23.3UniSTS
Cytogenetic Map2p16.2UniSTS
Cytogenetic Map9q22.31UniSTS
Cytogenetic Map9p24.3UniSTS
Cytogenetic Map7q35UniSTS
Cytogenetic Map1p36.2UniSTS
Cytogenetic Map11q22.3UniSTS
Cytogenetic Map16p12UniSTS
Cytogenetic Map1q22-q23UniSTS
Cytogenetic Map13q22.1UniSTS
Cytogenetic Map2q12.2UniSTS
Cytogenetic Map8p12UniSTS
Cytogenetic Map4q21UniSTS
Cytogenetic Map13q12.2UniSTS
Cytogenetic Map9q31-q33UniSTS
Cytogenetic Map6p24.1UniSTS
Cytogenetic Map1q23UniSTS
Cytogenetic Map11q12-q13UniSTS
Cytogenetic Map11q13.3UniSTS
Cytogenetic Map11q24.2UniSTS
Cytogenetic Map11q12.1UniSTS
Cytogenetic Map3p26UniSTS
Cytogenetic Map5q13UniSTS
Cytogenetic Map8p21UniSTS
Cytogenetic Map19q13.1-q13.2UniSTS
Cytogenetic Map1p33-p32UniSTS
Cytogenetic Map7q36.2UniSTS
Cytogenetic Map4q32.3UniSTS
Cytogenetic Map16p13.2UniSTS
Cytogenetic Map14q32UniSTS
Cytogenetic Map10q11.23UniSTS
Cytogenetic Map10q26.1UniSTS
Cytogenetic Map9q32-q33.3UniSTS
Cytogenetic Map9q22.1-q22.2UniSTS
Cytogenetic Map3q26.1-q26.2UniSTS
Cytogenetic Map5q31-q34UniSTS
Cytogenetic Map9q33-q34UniSTS
Cytogenetic Map5q11.2-q13.2UniSTS
Cytogenetic Map13q32UniSTS
Cytogenetic Map9q22.32UniSTS
Cytogenetic Map1p36.3UniSTS
Cytogenetic Map1p36.3-p36.2UniSTS
Cytogenetic Map4q28.1UniSTS
Cytogenetic Map5q22UniSTS
Cytogenetic Map12p11.21UniSTS
Cytogenetic MapXq13.3UniSTS
Cytogenetic Map9q31.3UniSTS
Cytogenetic Map3p26.3UniSTS
Cytogenetic Map2q11.1UniSTS
Cytogenetic Map21q11.2UniSTS
Cytogenetic Map18q21.32UniSTS
Cytogenetic Map15q26.2UniSTS
Cytogenetic Map12q24.23UniSTS
Cytogenetic Map10q25.3UniSTS
Cytogenetic Map20q11.23UniSTS
Cytogenetic Map20p12.1UniSTS
Cytogenetic Map2q31.1-q31.2UniSTS
Cytogenetic MapXp22.31UniSTS
Cytogenetic MapXp21.3UniSTS
Cytogenetic Map5q33.3UniSTS
Cytogenetic Map4q28.2UniSTS
Cytogenetic Map3p14.2UniSTS
Cytogenetic Map3q24UniSTS
Cytogenetic Map2q13UniSTS
Cytogenetic Map20q13.2UniSTS
Cytogenetic Map14q11.2-q12UniSTS
Cytogenetic Map3p24UniSTS
Cytogenetic Map12q23.3UniSTS
Cytogenetic Map11q24.3UniSTS
Cytogenetic Map11q14.3UniSTS
Cytogenetic Map10q25.2UniSTS
Cytogenetic Map3q25.1UniSTS
Cytogenetic Map8q13UniSTS
Cytogenetic Map1p22.2UniSTS
Cytogenetic Map3p22.3UniSTS
Cytogenetic Map18q11.1UniSTS
Cytogenetic Map8q23.3UniSTS
Cytogenetic Map15q24UniSTS
Cytogenetic Map11cen-q12UniSTS
Cytogenetic Map11q25UniSTS
Cytogenetic Map3p22.2UniSTS
Cytogenetic MapXp21.1UniSTS
Cytogenetic Map7q36UniSTS
Cytogenetic Map7p14.3UniSTS
Cytogenetic Map12q21UniSTS
Cytogenetic Map7p15UniSTS
Cytogenetic Map7q22-q31UniSTS
Cytogenetic Map11q22UniSTS
Cytogenetic Map5p15.3UniSTS
Cytogenetic Map20q13.3-qterUniSTS
Cytogenetic Map1p35-p34UniSTS
Cytogenetic Map4p13-p12UniSTS
Cytogenetic Map10q21-q22UniSTS
Cytogenetic Map4q22UniSTS
Cytogenetic Map7p13-p11.1UniSTS
Cytogenetic Map9q31-q34UniSTS
Cytogenetic Map7q21.1-q22UniSTS
Cytogenetic Map15q26.1UniSTS
Cytogenetic Map3q13.13-q13.2UniSTS
Cytogenetic MapXp22.13UniSTS
Cytogenetic Map13q12.12UniSTS
Cytogenetic Map13q14.2UniSTS
Cytogenetic Map12qUniSTS
Cytogenetic Map1pUniSTS
Cytogenetic Map16pUniSTS
Cytogenetic Map15qUniSTS
Cytogenetic Map7qUniSTS
Cytogenetic Map2qUniSTS
Cytogenetic Map5q13.1UniSTS
Cytogenetic Map11p14.1UniSTS
Cytogenetic Map4q32UniSTS
Cytogenetic Map2p22UniSTS
Cytogenetic Map5q14.3UniSTS
Cytogenetic Map10p12.1UniSTS
Cytogenetic Map5q23.2UniSTS
Cytogenetic Map2p24.1UniSTS
Cytogenetic Map8q24.13UniSTS
Cytogenetic Map12p13.32UniSTS
Cytogenetic Map9p21.1UniSTS
Cytogenetic Map9q34.2-q34.3UniSTS


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
1204 2439 2788 2253 4973 1726 2351 6 623 1951 465 2269 7306 6472 53 3734 852 1744 1617 175 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NG_015831 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001198681 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001198683 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_017526 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC119800 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK023598 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK026175 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK074841 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK094801 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK130096 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK309370 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC011027 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC036581 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC056250 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC140007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BI715133 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BU677319 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX360952 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CA434795 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB140261 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471059 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068277 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CQ783702 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CQ860091 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CQ878351 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CR541647 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CR541737 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HH768651 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  MK050966 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Y12670 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENST00000371065   ⟹   ENSP00000360104
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl165,420,668 - 65,436,007 (+)Ensembl
Ensembl Acc Id: ENST00000475108   ⟹   ENSP00000497944
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl165,420,587 - 65,432,064 (+)Ensembl
Ensembl Acc Id: ENST00000484243   ⟹   ENSP00000497374
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl165,420,710 - 65,430,303 (+)Ensembl
Ensembl Acc Id: ENST00000488747   ⟹   ENSP00000497385
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl165,420,708 - 65,431,920 (+)Ensembl
Ensembl Acc Id: ENST00000497874
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl165,420,668 - 65,428,009 (+)Ensembl
Ensembl Acc Id: ENST00000613538   ⟹   ENSP00000483521
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl165,420,716 - 65,436,007 (+)Ensembl
RefSeq Acc Id: NM_001198681   ⟹   NP_001185610
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38165,420,668 - 65,436,007 (+)NCBI
GRCh37165,886,131 - 66,107,242 (+)NCBI
HuRef163,994,919 - 64,010,490 (+)ENTREZGENE
CHM1_1166,002,670 - 66,017,961 (+)NCBI
T2T-CHM13v2.0165,298,645 - 65,313,980 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001198683   ⟹   NP_001185612
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38165,420,668 - 65,428,009 (+)NCBI
GRCh37165,886,131 - 66,107,242 (+)NCBI
HuRef163,994,919 - 64,010,490 (+)ENTREZGENE
CHM1_1166,002,402 - 66,009,963 (+)NCBI
T2T-CHM13v2.0165,298,645 - 65,305,983 (+)NCBI
Sequence:
RefSeq Acc Id: NM_017526   ⟹   NP_059996
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38165,420,668 - 65,436,007 (+)NCBI
GRCh37165,886,131 - 66,107,242 (+)NCBI
Build 36165,658,907 - 65,670,852 (+)NCBI Archive
Celera164,176,916 - 64,192,274 (+)RGD
HuRef163,994,919 - 64,010,490 (+)ENTREZGENE
CHM1_1166,002,402 - 66,017,961 (+)NCBI
T2T-CHM13v2.0165,298,645 - 65,313,980 (+)NCBI
Sequence:
RefSeq Acc Id: NP_059996   ⟸   NM_017526
- Peptide Label: isoform 1
- UniProtKB: Q6FHL5 (UniProtKB/Swiss-Prot),   O15243 (UniProtKB/Swiss-Prot),   A0A3B3ISI8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001185612   ⟸   NM_001198683
- Peptide Label: isoform 3
- UniProtKB: O15243 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001185610   ⟸   NM_001198681
- Peptide Label: isoform 2
- UniProtKB: A0A087X0N2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSP00000360104   ⟸   ENST00000371065
Ensembl Acc Id: ENSP00000483521   ⟸   ENST00000613538
Ensembl Acc Id: ENSP00000497374   ⟸   ENST00000484243
Ensembl Acc Id: ENSP00000497385   ⟸   ENST00000488747
Ensembl Acc Id: ENSP00000497944   ⟸   ENST00000475108

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-O15243-F1-model_v2 AlphaFold O15243 1-131 view protein structure

Promoters
RGD ID:6855782
Promoter ID:EPDNEW_H1056
Type:initiation region
Name:LEPROT_7
Description:leptin receptor overlapping transcript
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H1058  EPDNEW_H1060  EPDNEW_H1062  EPDNEW_H1063  EPDNEW_H1064  EPDNEW_H1065  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38165,420,552 - 65,420,612EPDNEW
RGD ID:6855786
Promoter ID:EPDNEW_H1058
Type:initiation region
Name:LEPROT_1
Description:leptin receptor overlapping transcript
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H1056  EPDNEW_H1060  EPDNEW_H1062  EPDNEW_H1063  EPDNEW_H1064  EPDNEW_H1065  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38165,420,701 - 65,420,761EPDNEW
RGD ID:6855790
Promoter ID:EPDNEW_H1060
Type:initiation region
Name:LEPROT_3
Description:leptin receptor overlapping transcript
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H1056  EPDNEW_H1058  EPDNEW_H1062  EPDNEW_H1063  EPDNEW_H1064  EPDNEW_H1065  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38165,420,718 - 65,420,778EPDNEW
RGD ID:6855794
Promoter ID:EPDNEW_H1062
Type:initiation region
Name:LEPROT_6
Description:leptin receptor overlapping transcript
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H1056  EPDNEW_H1058  EPDNEW_H1060  EPDNEW_H1063  EPDNEW_H1064  EPDNEW_H1065  
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38165,425,330 - 65,425,390EPDNEW
RGD ID:6855796
Promoter ID:EPDNEW_H1063
Type:initiation region
Name:LEPROT_4
Description:leptin receptor overlapping transcript
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H1056  EPDNEW_H1058  EPDNEW_H1060  EPDNEW_H1062  EPDNEW_H1064  EPDNEW_H1065  
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38165,429,972 - 65,430,032EPDNEW
RGD ID:6855798
Promoter ID:EPDNEW_H1064
Type:initiation region
Name:LEPROT_5
Description:leptin receptor overlapping transcript
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H1056  EPDNEW_H1058  EPDNEW_H1060  EPDNEW_H1062  EPDNEW_H1063  EPDNEW_H1065  
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38165,431,814 - 65,431,874EPDNEW
RGD ID:6855800
Promoter ID:EPDNEW_H1065
Type:initiation region
Name:LEPROT_2
Description:leptin receptor overlapping transcript
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H1056  EPDNEW_H1058  EPDNEW_H1060  EPDNEW_H1062  EPDNEW_H1063  EPDNEW_H1064  
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38165,433,267 - 65,433,327EPDNEW
RGD ID:6785930
Promoter ID:HG_KWN:3114
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   HeLa_S3,   K562,   Lymphoblastoid,   NB4
Transcripts:ENST00000344610,   ENST00000406510,   OTTHUMT00000025132,   OTTHUMT00000025133,   OTTHUMT00000025263,   OTTHUMT00000025265,   OTTHUMT00000025275,   OTTHUMT00000025276,   OTTHUMT00000025277,   UC009WAO.1,   UC009WAP.1,   UC009WAQ.1
Position:
Human AssemblyChrPosition (strand)Source
Build 36165,658,231 - 65,659,132 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:29477 AgrOrtholog
COSMIC LEPROT COSMIC
Ensembl Genes ENSG00000213625 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000371065 ENTREZGENE
  ENST00000371065.9 UniProtKB/Swiss-Prot
  ENST00000475108.5 UniProtKB/TrEMBL
  ENST00000484243.1 UniProtKB/TrEMBL
  ENST00000488747.5 UniProtKB/TrEMBL
  ENST00000497874 ENTREZGENE
  ENST00000613538 ENTREZGENE
  ENST00000613538.1 UniProtKB/TrEMBL
GTEx ENSG00000213625 GTEx
HGNC ID HGNC:29477 ENTREZGENE
Human Proteome Map LEPROT Human Proteome Map
InterPro Vps55/LEPROT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:54741 UniProtKB/Swiss-Prot
NCBI Gene 54741 ENTREZGENE
OMIM 613461 OMIM
PANTHER LEPTIN RECEPTOR GENE-RELATED PROTEIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR12050 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Vps55 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA134913422 PharmGKB
PROSITE PROKAR_LIPOPROTEIN UniProtKB/TrEMBL
UniProt A0A087X0N2 ENTREZGENE, UniProtKB/TrEMBL
  A0A3B3ISI6_HUMAN UniProtKB/TrEMBL
  A0A3B3ISI8 ENTREZGENE, UniProtKB/TrEMBL
  A0A3B3ITV1_HUMAN UniProtKB/TrEMBL
  O15243 ENTREZGENE, UniProtKB/Swiss-Prot
  Q6FHL5 ENTREZGENE
UniProt Secondary Q6FHL5 UniProtKB/Swiss-Prot