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Gene: HDAC9 (histone deacetylase 9) Homo sapiens
Symbol: HDAC9
Name: histone deacetylase 9
Description: Exhibits enzyme binding activity; histone deacetylase activity (H4-K16 specific); and repressing transcription factor binding activity. Involved in several processes, including cholesterol homeostasis; negative regulation of lipoprotein lipase activity; and protein deacetylation. Localizes to the cytoplasm; nucleus; and transcription factor complex.
Type: protein-coding
RefSeq Status: REVIEWED
Also known as: DKFZp779K1053; HD7; HD7b; HD9; HDAC; HDAC7; HDAC7B; HDAC9B; HDAC9FL; HDRP; histone deacetylase 4/5-related protein; histone deacetylase 7; histone deacetylase 7B; histone deacetylase-related protein; KIAA0744; MEF-2 interacting transcription repressor (MITR) protein; MEF2-interacting transcription repressor MITR; MITR
Mus musculus (house mouse) : Hdac9 (histone deacetylase 9)  MGI  Alliance
Rattus norvegicus (Norway rat) : Hdac9 (histone deacetylase 9)  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Hdac9 (histone deacetylase 9)
Pan paniscus (bonobo/pygmy chimpanzee) : HDAC9 (histone deacetylase 9)
Canis lupus familiaris (dog) : HDAC9 (histone deacetylase 9)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Hdac9 (histone deacetylase 9)
Sus scrofa (pig) : HDAC9 (histone deacetylase 9)
more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Human AssemblyChrPosition (strand)SourceGenome Browsers
GRCh38 Ensembl718,086,949 - 19,002,416 (+)Ensembl
GRCh38718,086,825 - 19,002,416 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37718,126,572 - 19,039,135 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36718,501,894 - 19,003,518 (+)NCBINCBI36hg18NCBI36
Build 34718,309,165 - 18,808,925NCBI
Celera718,515,050 - 19,016,663 (+)NCBI
Cytogenetic Map7p21.1NCBI
HuRef718,012,000 - 18,921,632 (+)NCBIHuRef
CHM1_1718,127,634 - 19,042,865 (+)NCBICHM1_1
CRA_TCAGchr7v2718,254,965 - 19,088,496 (+)NCBI
JBrowse: View Region in Genome Browser (JBrowse)

Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated


Comparative Map Data
Position Markers
miRNA Target Status


RNA-SEQ Expression


Nucleotide Sequences
Protein Sequences
Clinical Variants

Additional Information

External Database Links
More on HDAC9
Alliance Gene
Ensembl Gene
JBrowse: hg19 hg38
HGNC Report
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1353912
Created: 2005-03-08
Species: Homo sapiens
Last Modified: 2019-12-25
Status: ACTIVE


RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.