FSCN3 (fascin actin-bundling protein 3)

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Gene: FSCN3 (fascin actin-bundling protein 3) Homo sapiens

Analyze

Symbol:

FSCN3

Name:

fascin actin-bundling protein 3

RGD ID:

1353847

HGNC Page

HGNC

Description:

Predicted to have actin filament binding activity. Predicted to be involved in actin filament bundle assembly; cell migration; and establishment or maintenance of cell polarity. Predicted to localize to several cellular components, including lamellipodium; microvillus; and ruffle; INTERACTS WITH benzo[a]pyrene; sodium arsenite; 1,2-dimethylhydrazine (ortholog).

Type:

protein-coding

RefSeq Status:

VALIDATED

Also known as:

fascin actin-bundling protein 3, testicular; fascin homolog 3, actin-bundling protein, testicular; fascin-3; testicular secretory protein Li 18; testis fascin

RGD Orthologs

Mouse

Rat

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

Allele / Splice:

See ClinVar data

Latest Assembly:

GRCh38 - Human Genome Assembly GRCh38

Position:

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	7	127,591,409 - 127,602,144 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	7	127,593,736 - 127,602,144 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	7	127,233,790 - 127,242,198 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
GRCh37	7	127,233,689 - 127,241,851 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	7	127,020,925 - 127,029,079 (+)	NCBI	NCBI36		hg18	NCBI36
Build 34	7	126,827,639 - 126,835,794	NCBI
Celera	7	122,037,417 - 122,045,564 (+)	NCBI
Cytogenetic Map	7	q32.1	NCBI
HuRef	7	121,594,759 - 121,602,743 (+)	NCBI		HuRef
CHM1_1	7	127,166,986 - 127,175,152 (+)	NCBI		CHM1_1
CRA_TCAGchr7v2	7	126,617,134 - 126,625,289 (+)	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

pleomorphic xanthoastrocytoma (IAGP)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

acetamide (ISO)

acrylamide (ISO)

amphetamine (ISO)

benzo[a]pyrene (EXP,ISO)

benzo[b]fluoranthene (ISO)

bisphenol A (ISO)

carbon nanotube (ISO)

chrysene (ISO)

endosulfan (ISO)

paracetamol (ISO)

sodium arsenite (EXP)

sodium fluoride (ISO)

tamoxifen (ISO)

tetraphene (ISO)

thioacetamide (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

actin filament bundle assembly (IBA)

actin filament organization (IEA)

cell migration (IBA)

establishment or maintenance of cell polarity (IBA)

spermatid development (IEA)

Cellular Component

actin cytoskeleton (IBA,ISS)

cell projection membrane (IBA)

cytoplasm (IBA,ISO)

cytoskeleton (TAS)

filopodium (IBA)

growth cone (IBA)

lamellipodium (IBA)

microvillus (IBA)

ruffle (IBA)

Molecular Function

actin filament binding (IBA,IEA)

protein-macromolecule adaptor activity (IEA)

References

References - curated


1.	GOA_HUMAN data from the GO Consortium
2.	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:8125298	PMID:10783262	PMID:11925108	PMID:12477932	PMID:12690205	PMID:15489334	PMID:17567994	PMID:21873635	PMID:28514442

Genomics

Comparative Map Data

FSCN3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	7	127,591,409 - 127,602,144 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	7	127,593,736 - 127,602,144 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	7	127,233,790 - 127,242,198 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
GRCh37	7	127,233,689 - 127,241,851 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	7	127,020,925 - 127,029,079 (+)	NCBI	NCBI36		hg18	NCBI36
Build 34	7	126,827,639 - 126,835,794	NCBI
Celera	7	122,037,417 - 122,045,564 (+)	NCBI
Cytogenetic Map	7	q32.1	NCBI
HuRef	7	121,594,759 - 121,602,743 (+)	NCBI		HuRef
CHM1_1	7	127,166,986 - 127,175,152 (+)	NCBI		CHM1_1
CRA_TCAGchr7v2	7	126,617,134 - 126,625,289 (+)	NCBI

Fscn3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	28,427,869 - 28,438,621 (+)	NCBI	GRCm39		mm39
GRCm38	6	28,427,870 - 28,438,622 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	28,427,789 - 28,438,622 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	6	28,377,901 - 28,388,622 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	6	28,377,911 - 28,388,632 (+)	NCBI			mm8
Celera	6	28,434,941 - 28,445,662 (+)	NCBI		Celera
Cytogenetic Map	6	A3.3	NCBI

Fscn3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	4	57,042,797 - 57,052,224 (+)	NCBI
Rnor_6.0 Ensembl	4	55,720,010 - 55,729,457 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	4	55,719,976 - 55,729,442 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	4	55,467,449 - 55,476,891 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	4	55,298,103 - 55,307,523 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	4	55,548,259 - 55,557,678 (+)	NCBI
Celera	4	52,154,383 - 52,163,752 (+)	NCBI		Celera
Cytogenetic Map	4	q22	NCBI

Fscn3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955479	8,648,582 - 8,654,493 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955479	8,649,022 - 8,656,899 (+)	NCBI	ChiLan1.0	ChiLan1.0

FSCN3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	7	132,244,268 - 132,252,312 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	7	132,244,268 - 132,250,913 (+)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	7	119,589,219 - 119,597,360 (+)	NCBI	Mhudiblu_PPA_v0		panPan3

FSCN3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1 Ensembl	14	8,722,069 - 8,730,729 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
CanFam3.1	14	8,719,857 - 8,730,881 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

Fscn3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936479	14,794,876 - 14,803,549 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

FSCN3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	18	20,686,746 - 20,693,552 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	18	20,684,621 - 20,693,552 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	18	21,688,295 - 21,697,317 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

FSCN3
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	21	96,407,983 - 96,416,313 (+)	NCBI
ChlSab1.1 Ensembl	21	96,409,005 - 96,414,922 (+)	Ensembl

Fscn3
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624783	8,345,467 - 8,356,973 (-)	NCBI

Position Markers

AF047019

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	127,234,015 - 127,234,383	UniSTS	GRCh37
Build 36	7	127,021,251 - 127,021,619	RGD	NCBI36
Celera	7	122,037,743 - 122,038,104	RGD
Cytogenetic Map	7	q31.3	UniSTS
HuRef	7	121,595,085 - 121,595,275	UniSTS
CRA_TCAGchr7v2	7	126,617,460 - 126,617,821	UniSTS

ECD03327

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	127,240,060 - 127,240,859	UniSTS	GRCh37
Build 36	7	127,027,296 - 127,028,095	RGD	NCBI36
Celera	7	122,043,781 - 122,044,580	RGD
Cytogenetic Map	7	q31.3	UniSTS
HuRef	7	121,600,952 - 121,601,751	UniSTS
CRA_TCAGchr7v2	7	126,623,498 - 126,624,297	UniSTS

ECD04411

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	127,234,383 - 127,235,148	UniSTS	GRCh37
Build 36	7	127,021,619 - 127,022,384	RGD	NCBI36
Celera	7	122,038,104 - 122,038,869	RGD
Cytogenetic Map	7	q31.3	UniSTS
HuRef	7	121,595,275 - 121,596,040	UniSTS
CRA_TCAGchr7v2	7	126,617,821 - 126,618,586	UniSTS

ECD05740

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	127,235,190 - 127,235,918	UniSTS	GRCh37
Build 36	7	127,022,426 - 127,023,154	RGD	NCBI36
Celera	7	122,038,911 - 122,039,639	RGD
Cytogenetic Map	7	q31.3	UniSTS
HuRef	7	121,596,082 - 121,596,810	UniSTS
CRA_TCAGchr7v2	7	126,618,628 - 126,619,356	UniSTS

ECD08247

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	127,235,988 - 127,236,648	UniSTS	GRCh37
Build 36	7	127,023,224 - 127,023,884	RGD	NCBI36
Celera	7	122,039,709 - 122,040,369	RGD
Cytogenetic Map	7	q31.3	UniSTS
HuRef	7	121,596,880 - 121,597,540	UniSTS
CRA_TCAGchr7v2	7	126,619,426 - 126,620,086	UniSTS

ECD11753

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	127,241,283 - 127,241,846	UniSTS	GRCh37
Build 36	7	127,028,519 - 127,029,082	RGD	NCBI36
Celera	7	122,045,004 - 122,045,567	RGD
Cytogenetic Map	7	q31.3	UniSTS
HuRef	7	121,602,175 - 121,602,738	UniSTS
CRA_TCAGchr7v2	7	126,624,721 - 126,625,284	UniSTS

ECD12933

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	127,232,963 - 127,233,494	UniSTS	GRCh37
Build 36	7	127,020,199 - 127,020,730	RGD	NCBI36
Celera	7	122,036,691 - 122,037,222	RGD
Cytogenetic Map	7	q31.3	UniSTS
HuRef	7	121,594,033 - 121,594,564	UniSTS
CRA_TCAGchr7v2	7	126,616,408 - 126,616,939	UniSTS

ECD14734

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	127,233,611 - 127,234,214	UniSTS	GRCh37
GRCh37	7	127,233,611 - 127,234,098	UniSTS	GRCh37
Build 36	7	127,020,847 - 127,021,334	RGD	NCBI36
Celera	7	122,037,339 - 122,037,826	RGD
Celera	7	122,037,339 - 122,037,942	UniSTS
HuRef	7	121,594,681 - 121,595,168	UniSTS
CRA_TCAGchr7v2	7	126,617,056 - 126,617,659	UniSTS
CRA_TCAGchr7v2	7	126,617,056 - 126,617,543	UniSTS

ECD15359

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	127,238,248 - 127,238,720	UniSTS	GRCh37
Build 36	7	127,025,484 - 127,025,956	RGD	NCBI36
Celera	7	122,041,969 - 122,042,441	RGD
Cytogenetic Map	7	q31.3	UniSTS
HuRef	7	121,599,140 - 121,599,612	UniSTS
CRA_TCAGchr7v2	7	126,621,686 - 126,622,158	UniSTS

ECD18282

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	127,239,337 - 127,239,703	UniSTS	GRCh37
Build 36	7	127,026,573 - 127,026,939	RGD	NCBI36
Celera	7	122,043,058 - 122,043,424	RGD
Cytogenetic Map	7	q31.3	UniSTS
HuRef	7	121,600,229 - 121,600,595	UniSTS
CRA_TCAGchr7v2	7	126,622,775 - 126,623,141	UniSTS

REN115674

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	127,231,793 - 127,232,034	UniSTS	GRCh37
Build 36	7	127,019,029 - 127,019,270	RGD	NCBI36
Celera	7	122,035,521 - 122,035,762	RGD
HuRef	7	121,592,863 - 121,593,104	UniSTS
CRA_TCAGchr7v2	7	126,615,238 - 126,615,479	UniSTS

REN115675

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	127,231,957 - 127,232,195	UniSTS	GRCh37
Build 36	7	127,019,193 - 127,019,431	RGD	NCBI36
Celera	7	122,035,685 - 122,035,923	RGD
HuRef	7	121,593,027 - 121,593,265	UniSTS
CRA_TCAGchr7v2	7	126,615,402 - 126,615,640	UniSTS

REN115676

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	127,232,586 - 127,232,821	UniSTS	GRCh37
Build 36	7	127,019,822 - 127,020,057	RGD	NCBI36
Celera	7	122,036,314 - 122,036,549	RGD
HuRef	7	121,593,656 - 121,593,891	UniSTS
CRA_TCAGchr7v2	7	126,616,031 - 126,616,266	UniSTS

REN115677

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	127,232,812 - 127,233,080	UniSTS	GRCh37
Build 36	7	127,020,048 - 127,020,316	RGD	NCBI36
Celera	7	122,036,540 - 122,036,808	RGD
HuRef	7	121,593,882 - 121,594,150	UniSTS
CRA_TCAGchr7v2	7	126,616,257 - 126,616,525	UniSTS

REN115678

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	127,233,063 - 127,233,314	UniSTS	GRCh37
Build 36	7	127,020,299 - 127,020,550	RGD	NCBI36
Celera	7	122,036,791 - 122,037,042	RGD
HuRef	7	121,594,133 - 121,594,384	UniSTS
CRA_TCAGchr7v2	7	126,616,508 - 126,616,759	UniSTS

REN115679

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	127,233,284 - 127,233,531	UniSTS	GRCh37
Build 36	7	127,020,520 - 127,020,767	RGD	NCBI36
Celera	7	122,037,012 - 122,037,259	RGD
HuRef	7	121,594,354 - 121,594,601	UniSTS
CRA_TCAGchr7v2	7	126,616,729 - 126,616,976	UniSTS

REN115680

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	127,233,508 - 127,233,742	UniSTS	GRCh37
Build 36	7	127,020,744 - 127,020,978	RGD	NCBI36
Celera	7	122,037,236 - 122,037,470	RGD
HuRef	7	121,594,578 - 121,594,812	UniSTS
CRA_TCAGchr7v2	7	126,616,953 - 126,617,187	UniSTS

REN115681

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	127,233,696 - 127,233,943	UniSTS	GRCh37
Build 36	7	127,020,932 - 127,021,179	RGD	NCBI36
Celera	7	122,037,424 - 122,037,671	RGD
Cytogenetic Map	7	q31.3	UniSTS
HuRef	7	121,594,766 - 121,595,013	UniSTS
CRA_TCAGchr7v2	7	126,617,141 - 126,617,388	UniSTS

REN115682

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	127,233,807 - 127,234,065	UniSTS	GRCh37
Build 36	7	127,021,043 - 127,021,301	RGD	NCBI36
Celera	7	122,037,535 - 122,037,793	RGD
HuRef	7	121,594,877 - 121,595,135	UniSTS
CRA_TCAGchr7v2	7	126,617,252 - 126,617,510	UniSTS

REN115684

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	127,234,273 - 127,234,538	UniSTS	GRCh37
GRCh37	7	127,234,185 - 127,234,538	UniSTS	GRCh37
Build 36	7	127,021,421 - 127,021,774	RGD	NCBI36
Celera	7	122,037,913 - 122,038,259	RGD
Celera	7	122,038,001 - 122,038,259	UniSTS
CRA_TCAGchr7v2	7	126,617,630 - 126,617,976	UniSTS
CRA_TCAGchr7v2	7	126,617,718 - 126,617,976	UniSTS

REN115685

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	127,234,515 - 127,234,764	UniSTS	GRCh37
Build 36	7	127,021,751 - 127,022,000	RGD	NCBI36
Celera	7	122,038,236 - 122,038,485	RGD
HuRef	7	121,595,407 - 121,595,656	UniSTS
CRA_TCAGchr7v2	7	126,617,953 - 126,618,202	UniSTS

REN115686

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	127,234,760 - 127,234,998	UniSTS	GRCh37
Build 36	7	127,021,996 - 127,022,234	RGD	NCBI36
Celera	7	122,038,481 - 122,038,719	RGD
HuRef	7	121,595,652 - 121,595,890	UniSTS
CRA_TCAGchr7v2	7	126,618,198 - 126,618,436	UniSTS

REN115687

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	127,234,973 - 127,235,225	UniSTS	GRCh37
Build 36	7	127,022,209 - 127,022,461	RGD	NCBI36
Celera	7	122,038,694 - 122,038,946	RGD
HuRef	7	121,595,865 - 121,596,117	UniSTS
CRA_TCAGchr7v2	7	126,618,411 - 126,618,663	UniSTS

REN115688

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	127,235,202 - 127,235,454	UniSTS	GRCh37
Build 36	7	127,022,438 - 127,022,690	RGD	NCBI36
Celera	7	122,038,923 - 122,039,175	RGD
HuRef	7	121,596,094 - 121,596,346	UniSTS
CRA_TCAGchr7v2	7	126,618,640 - 126,618,892	UniSTS

REN115689

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	127,235,449 - 127,235,675	UniSTS	GRCh37
Build 36	7	127,022,685 - 127,022,911	RGD	NCBI36
Celera	7	122,039,170 - 122,039,396	RGD
Cytogenetic Map	7	q31.3	UniSTS
HuRef	7	121,596,341 - 121,596,567	UniSTS
CRA_TCAGchr7v2	7	126,618,887 - 126,619,113	UniSTS

REN115690

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	127,235,655 - 127,235,923	UniSTS	GRCh37
Build 36	7	127,022,891 - 127,023,159	RGD	NCBI36
Celera	7	122,039,376 - 122,039,644	RGD
Cytogenetic Map	7	q31.3	UniSTS
HuRef	7	121,596,547 - 121,596,815	UniSTS
CRA_TCAGchr7v2	7	126,619,093 - 126,619,361	UniSTS

REN115691

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	127,235,920 - 127,236,173	UniSTS	GRCh37
Build 36	7	127,023,156 - 127,023,409	RGD	NCBI36
Celera	7	122,039,641 - 122,039,894	RGD
HuRef	7	121,596,812 - 121,597,065	UniSTS
CRA_TCAGchr7v2	7	126,619,358 - 126,619,611	UniSTS

REN115692

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	127,236,143 - 127,236,377	UniSTS	GRCh37
Build 36	7	127,023,379 - 127,023,613	RGD	NCBI36
Celera	7	122,039,864 - 122,040,098	RGD
HuRef	7	121,597,035 - 121,597,269	UniSTS
CRA_TCAGchr7v2	7	126,619,581 - 126,619,815	UniSTS

REN115693

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	127,236,354 - 127,236,602	UniSTS	GRCh37
Build 36	7	127,023,590 - 127,023,838	RGD	NCBI36
Celera	7	122,040,075 - 122,040,323	RGD
HuRef	7	121,597,246 - 121,597,494	UniSTS
CRA_TCAGchr7v2	7	126,619,792 - 126,620,040	UniSTS

REN115694

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	127,236,580 - 127,236,836	UniSTS	GRCh37
Build 36	7	127,023,816 - 127,024,072	RGD	NCBI36
Celera	7	122,040,301 - 122,040,557	RGD
HuRef	7	121,597,472 - 121,597,728	UniSTS
CRA_TCAGchr7v2	7	126,620,018 - 126,620,274	UniSTS

REN115695

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	127,236,817 - 127,237,060	UniSTS	GRCh37
Build 36	7	127,024,053 - 127,024,296	RGD	NCBI36
Celera	7	122,040,538 - 122,040,781	RGD
HuRef	7	121,597,709 - 121,597,952	UniSTS
CRA_TCAGchr7v2	7	126,620,255 - 126,620,498	UniSTS

REN115696

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	127,237,000 - 127,237,229	UniSTS	GRCh37
Build 36	7	127,024,236 - 127,024,465	RGD	NCBI36
Celera	7	122,040,721 - 122,040,950	RGD
HuRef	7	121,597,892 - 121,598,121	UniSTS
CRA_TCAGchr7v2	7	126,620,438 - 126,620,667	UniSTS

REN115697

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	127,237,190 - 127,237,442	UniSTS	GRCh37
Build 36	7	127,024,426 - 127,024,678	RGD	NCBI36
Celera	7	122,040,911 - 122,041,163	RGD
HuRef	7	121,598,082 - 121,598,334	UniSTS
CRA_TCAGchr7v2	7	126,620,628 - 126,620,880	UniSTS

REN115698

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	127,237,273 - 127,237,498	UniSTS	GRCh37
Build 36	7	127,024,509 - 127,024,734	RGD	NCBI36
Celera	7	122,040,994 - 122,041,219	RGD
HuRef	7	121,598,165 - 121,598,390	UniSTS
CRA_TCAGchr7v2	7	126,620,711 - 126,620,936	UniSTS

REN115699

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	127,237,822 - 127,238,050	UniSTS	GRCh37
Build 36	7	127,025,058 - 127,025,286	RGD	NCBI36
Celera	7	122,041,543 - 122,041,771	RGD
HuRef	7	121,598,714 - 121,598,942	UniSTS
CRA_TCAGchr7v2	7	126,621,260 - 126,621,488	UniSTS

REN115700

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	127,238,020 - 127,238,265	UniSTS	GRCh37
Build 36	7	127,025,256 - 127,025,501	RGD	NCBI36
Celera	7	122,041,741 - 122,041,986	RGD
HuRef	7	121,598,912 - 121,599,157	UniSTS
CRA_TCAGchr7v2	7	126,621,458 - 126,621,703	UniSTS

REN115701

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	127,238,248 - 127,238,491	UniSTS	GRCh37
Build 36	7	127,025,484 - 127,025,727	RGD	NCBI36
Celera	7	122,041,969 - 122,042,212	RGD
HuRef	7	121,599,140 - 121,599,383	UniSTS
CRA_TCAGchr7v2	7	126,621,686 - 126,621,929	UniSTS

REN115702

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	127,238,468 - 127,238,704	UniSTS	GRCh37
Build 36	7	127,025,704 - 127,025,940	RGD	NCBI36
Celera	7	122,042,189 - 122,042,425	RGD
HuRef	7	121,599,360 - 121,599,596	UniSTS
CRA_TCAGchr7v2	7	126,621,906 - 126,622,142	UniSTS

REN115703

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	127,238,624 - 127,238,850	UniSTS	GRCh37
Build 36	7	127,025,860 - 127,026,086	RGD	NCBI36
Celera	7	122,042,345 - 122,042,571	RGD
HuRef	7	121,599,516 - 121,599,742	UniSTS
CRA_TCAGchr7v2	7	126,622,062 - 126,622,288	UniSTS

REN115704

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	127,238,923 - 127,239,173	UniSTS	GRCh37
Build 36	7	127,026,159 - 127,026,409	RGD	NCBI36
Celera	7	122,042,644 - 122,042,894	RGD
HuRef	7	121,599,815 - 121,600,065	UniSTS
CRA_TCAGchr7v2	7	126,622,361 - 126,622,611	UniSTS

REN115705

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	127,239,152 - 127,239,396	UniSTS	GRCh37
Build 36	7	127,026,388 - 127,026,632	RGD	NCBI36
Celera	7	122,042,873 - 122,043,117	RGD
HuRef	7	121,600,044 - 121,600,288	UniSTS
CRA_TCAGchr7v2	7	126,622,590 - 126,622,834	UniSTS

REN115706

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	127,239,373 - 127,239,612	UniSTS	GRCh37
Build 36	7	127,026,609 - 127,026,848	RGD	NCBI36
Celera	7	122,043,094 - 122,043,333	RGD
HuRef	7	121,600,265 - 121,600,504	UniSTS
CRA_TCAGchr7v2	7	126,622,811 - 126,623,050	UniSTS

REN115707

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	127,239,484 - 127,239,710	UniSTS	GRCh37
Build 36	7	127,026,720 - 127,026,946	RGD	NCBI36
Celera	7	122,043,205 - 122,043,431	RGD
HuRef	7	121,600,376 - 121,600,602	UniSTS
CRA_TCAGchr7v2	7	126,622,922 - 126,623,148	UniSTS

REN115708

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	127,239,979 - 127,240,208	UniSTS	GRCh37
Build 36	7	127,027,215 - 127,027,444	RGD	NCBI36
Celera	7	122,043,700 - 122,043,929	RGD
HuRef	7	121,600,871 - 121,601,100	UniSTS
CRA_TCAGchr7v2	7	126,623,417 - 126,623,646	UniSTS

REN115709

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	127,240,196 - 127,240,432	UniSTS	GRCh37
Build 36	7	127,027,432 - 127,027,668	RGD	NCBI36
Celera	7	122,043,917 - 122,044,153	RGD
HuRef	7	121,601,088 - 121,601,324	UniSTS
CRA_TCAGchr7v2	7	126,623,634 - 126,623,870	UniSTS

REN115710

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	127,240,404 - 127,240,648	UniSTS	GRCh37
Build 36	7	127,027,640 - 127,027,884	RGD	NCBI36
Celera	7	122,044,125 - 122,044,369	RGD
HuRef	7	121,601,296 - 121,601,540	UniSTS
CRA_TCAGchr7v2	7	126,623,842 - 126,624,086	UniSTS

REN115711

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	127,240,645 - 127,240,902	UniSTS	GRCh37
Build 36	7	127,027,881 - 127,028,138	RGD	NCBI36
Celera	7	122,044,366 - 122,044,623	RGD
HuRef	7	121,601,537 - 121,601,794	UniSTS
CRA_TCAGchr7v2	7	126,624,083 - 126,624,340	UniSTS

REN115712

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	127,240,875 - 127,241,132	UniSTS	GRCh37
Build 36	7	127,028,111 - 127,028,368	RGD	NCBI36
Celera	7	122,044,596 - 122,044,853	RGD
HuRef	7	121,601,767 - 121,602,024	UniSTS
CRA_TCAGchr7v2	7	126,624,313 - 126,624,570	UniSTS

REN115713

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	127,241,120 - 127,241,353	UniSTS	GRCh37
Build 36	7	127,028,356 - 127,028,589	RGD	NCBI36
Celera	7	122,044,841 - 122,045,074	RGD
HuRef	7	121,602,012 - 121,602,245	UniSTS
CRA_TCAGchr7v2	7	126,624,558 - 126,624,791	UniSTS

REN115714

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	127,241,328 - 127,241,552	UniSTS	GRCh37
Build 36	7	127,028,564 - 127,028,788	RGD	NCBI36
Celera	7	122,045,049 - 122,045,273	RGD
HuRef	7	121,602,220 - 121,602,444	UniSTS
CRA_TCAGchr7v2	7	126,624,766 - 126,624,990	UniSTS

REN115715

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	127,241,539 - 127,241,769	UniSTS	GRCh37
Build 36	7	127,028,775 - 127,029,005	RGD	NCBI36
Celera	7	122,045,260 - 122,045,490	RGD
HuRef	7	121,602,431 - 121,602,661	UniSTS
CRA_TCAGchr7v2	7	126,624,977 - 126,625,207	UniSTS

REN115716

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	127,241,729 - 127,241,978	UniSTS	GRCh37
Build 36	7	127,028,965 - 127,029,214	RGD	NCBI36
Celera	7	122,045,450 - 122,045,699	RGD
HuRef	7	121,602,621 - 121,602,870	UniSTS
CRA_TCAGchr7v2	7	126,625,167 - 126,625,416	UniSTS

REN115717

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	127,241,888 - 127,242,124	UniSTS	GRCh37
Build 36	7	127,029,124 - 127,029,360	RGD	NCBI36
Celera	7	122,045,609 - 122,045,845	RGD
HuRef	7	121,602,780 - 121,603,016	UniSTS
CRA_TCAGchr7v2	7	126,625,326 - 126,625,562	UniSTS

stSG613726

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	127,231,741 - 127,233,123	UniSTS	GRCh37
Build 36	7	127,018,977 - 127,020,359	RGD	NCBI36
Celera	7	122,035,469 - 122,036,851	RGD
HuRef	7	121,592,811 - 121,594,193	UniSTS
CRA_TCAGchr7v2	7	126,615,186 - 126,616,568	UniSTS

stSG613727

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	127,233,104 - 127,234,544	UniSTS	GRCh37
Build 36	7	127,020,340 - 127,021,780	RGD	NCBI36
Celera	7	122,036,832 - 122,038,265	RGD
HuRef	7	121,594,174 - 121,595,436	UniSTS
CRA_TCAGchr7v2	7	126,616,549 - 126,617,982	UniSTS

stSG613728

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	127,234,525 - 127,235,784	UniSTS	GRCh37
Build 36	7	127,021,761 - 127,023,020	RGD	NCBI36
Celera	7	122,038,246 - 122,039,505	RGD
HuRef	7	121,595,417 - 121,596,676	UniSTS
CRA_TCAGchr7v2	7	126,617,963 - 126,619,222	UniSTS

stSG613729

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	127,235,653 - 127,236,660	UniSTS	GRCh37
Build 36	7	127,022,889 - 127,023,896	RGD	NCBI36
Celera	7	122,039,374 - 122,040,381	RGD
HuRef	7	121,596,545 - 121,597,552	UniSTS
CRA_TCAGchr7v2	7	126,619,091 - 126,620,098	UniSTS

stSG613730

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	127,238,276 - 127,239,356	UniSTS	GRCh37
Build 36	7	127,025,512 - 127,026,592	RGD	NCBI36
Celera	7	122,041,997 - 122,043,077	RGD
HuRef	7	121,599,168 - 121,600,248	UniSTS
CRA_TCAGchr7v2	7	126,621,714 - 126,622,794	UniSTS

stSG613731

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	127,239,456 - 127,240,483	UniSTS	GRCh37
Build 36	7	127,026,692 - 127,027,719	RGD	NCBI36
Celera	7	122,043,177 - 122,044,204	RGD
HuRef	7	121,600,348 - 121,601,375	UniSTS
CRA_TCAGchr7v2	7	126,622,894 - 126,623,921	UniSTS

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	1180
Count of miRNA genes:	748
Interacting mature miRNAs:	895
Transcripts:	ENST00000265825, ENST00000420086, ENST00000421705, ENST00000469242, ENST00000478328, ENST00000478821
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system

circulatory system

endocrine system

exocrine system

hemolymphoid system

hepatobiliary system

integumental system

musculoskeletal system

nervous system

renal system

reproductive system

respiratory system

sensory system

adipose tissue

appendage

entire extraembryonic component

High

Medium

361

Low

221

113

295

475

132

103

180

Below cutoff

2247

2547

1475

493

1480

340

3756

1838

2827

286

883

1388

160

1143

2383

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_020369	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC000357	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC073934	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF281049	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK225867	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK300518	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK301765	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK314050	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC035606	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH236947	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH471070	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DQ655930	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	HM005558	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENST00000265825 ⟹ ENSP00000265825

RefSeq Status:

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p13 Ensembl	7	127,593,736 - 127,602,144 (+)	Ensembl

RefSeq Acc Id:

ENST00000421705 ⟹ ENSP00000402472

RefSeq Status:

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p13 Ensembl	7	127,593,742 - 127,595,485 (+)	Ensembl

RefSeq Acc Id:

ENST00000469242

RefSeq Status:

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p13 Ensembl	7	127,595,441 - 127,596,618 (+)	Ensembl

RefSeq Acc Id:

ENST00000478328

RefSeq Status:

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p13 Ensembl	7	127,591,409 - 127,595,468 (+)	Ensembl

RefSeq Acc Id:

ENST00000478821 ⟹ ENSP00000473531

RefSeq Status:

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p13 Ensembl	7	127,593,728 - 127,596,330 (+)	Ensembl

RefSeq Acc Id:

NM_020369 ⟹ NP_065102

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	7	127,593,736 - 127,602,144 (+)	NCBI
GRCh37	7	127,233,689 - 127,241,851 (+)	ENTREZGENE
Build 36	7	127,020,925 - 127,029,079 (+)	NCBI Archive
Celera	7	122,037,417 - 122,045,564 (+)	RGD
HuRef	7	121,594,759 - 121,602,743 (+)	ENTREZGENE
CHM1_1	7	127,166,986 - 127,175,152 (+)	NCBI
CRA_TCAGchr7v2	7	126,617,134 - 126,625,289 (+)	ENTREZGENE

Sequence:

show sequence

CCCTTTCCCCACTGTGGTGTGATAAGAGGCTGCCCTCACAGTCACAATGCTCCCGGGTCACAGA
GGTGCTGGGCCCCAGGCCAGCCTCTGCCTGGGAAGTTCTCTCTGGGAACATCTGGTGGGTACTA
CAGGCCCTATTCCAGGCCCTATGGCCTGTGGAACCTCACCACGGGGGGGAGGGCTGGGCCAGAC
GGAGACATCACCTGTGGTGTCAGCCCCATGGATGAGACAGAGTGGATACACAGACATCCCAAGG
CTGAGGACCTAAGGGTTGGGCTCATCAGCTGGGCAGGAACCTACCTCACCTTTGAGGCATGCAA
GAATACAGTCACTGCAACTGCGAAGAGTTTGGGCAGGAGACAGACCTGGGAGATCTTGGTGAGC
AATGAGCATGAGACACAGGCCGTGGTGCGACTAAAGAGCGTGCAGGGCCTCTACCTGCTGTGTG
AGTGTGATGGCACCGTGTGTTATGGCCGCCCAAGGACCAGCCACCATGGGTGCTTTCTACTGCG
TTTCCACCGGAACAGCAAGTGGACCCTCCAGTGCCTAATCTCTGGTCGTTATTTGGAGTCCAAT
GGCAAGGACGTGTTTTGCACTTCCCACGTCCTCTCAGCTTACCACATGTGGACCCCCCGACCAG
CCCTCCATGTCCACGTGATCCTCTACAGCCCCATCCACCGCTGCTATGCCCGGGCTGACCCCAC
TATGGGCCGCATCTGGGTGGACGCAGCAGTTCCCTGCCTGGAGGAGTGTGGCTTCCTGTTGCAT
TTCCGAGATGGATGCTACCACCTGGAGACCTCTACACACCACTTCTTGTCCCATGTAGACCGGC
TGTTCTCCCAACCCTCATCACAGACAGCTTTTCACATGCAAGTGCGGCCTGGAGGGCTTGTGGC
ACTGTGTGATGGAGAAGGAGGCATGTTATATCCACAGGGCACGCATCTGCTCTTGGGCATGGGC
TGCAACCCCATGAGGGGTGAGGAGTGGTTCATCCTACAGCACTGCCCAACCTGGGTCAGCCTCA
GGTCAAAGACTGGGCGGTTCATCTCAGTCATCTACGATGGTGAGGTGCGTGCTGCTTCTGAGCG
CTTAAACCGAATGTCCTTGTTCCAGTTTGAATGTGACAGTGAGAGCCCCACTGTGCAGCTTCGT
TCAGCCAATGGCTACTACCTATCCCAGAGGCGCCACAGGGCAGTAATGGCTGATGGGCACCCCC
TGGAGTCTGACACGTTCTTCCGAATGCACTGGAACTGTGGCAGGATCATCCTGCAGTCCTGCAG
GGGGCGCTTCCTGGGCATTGCACCCAACAGCCTGCTGATGGCCAATGTCATCCTTCCAGGCCCA
AATGAGGAATTTGGGATTTTATTTGCCAATCGCTCCTTCCTTGTATTGCGAGGTCGTTATGGCT
ATGTGGGCTCCTCATCGGGCCATGACCTCATACAGTGCAACCAGGATCAGCCCGACCGCATTCA
TCTACTACCCTGCCGACCGGGTATCTACCACTTCCAGGCACAGGGGGGATCCTTCTGGTCAATA
ACATCCTTTGGCACCTTTCGCCCTTGGGGCAAGTTTGCCCTCAACTTCTGTATCGAGCTTCAGG
GGAGCAACTTACTCACTGTACTGGCCCCCAATGGCTTCTACATGCGAGCCGACCAAAGTGGCAC
CCTGTTGGCAGACAGTGAAGACATTACCAGAGAGTGTATCTGGGAATTTTAGGTCAATGGGATG
TCACCTACCAAAATCCAAATCCTCCAGGAAAAACTACTACACTAAATGGACCAGGAACCTCAGA
GTCAAGATCCAAGAGAAGAACATCTGTTACAACTTTTCCTACCCAGTTTAGCAAAACACCTGTT
TTATGCAACAATACATCACAACAGGCCACCCCCAAAAAAAAAAAAAAAAAAAAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_065102	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAF91439	(Get FASTA)	NCBI Sequence Viewer
	AAH35606	(Get FASTA)	NCBI Sequence Viewer
	AEE61155	(Get FASTA)	NCBI Sequence Viewer
	BAG36759	(Get FASTA)	NCBI Sequence Viewer
	BAG62230	(Get FASTA)	NCBI Sequence Viewer
	BAG63225	(Get FASTA)	NCBI Sequence Viewer
	EAL24319	(Get FASTA)	NCBI Sequence Viewer
	EAW83632	(Get FASTA)	NCBI Sequence Viewer
	Q9NQT6	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_065102 ⟸ NM_020369

- UniProtKB:

Q9NQT6 (UniProtKB/Swiss-Prot), A0A140VK18 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MDETEWIHRHPKAEDLRVGLISWAGTYLTFEACKNTVTATAKSLGRRQTWEILVSNEHETQAVV
RLKSVQGLYLLCECDGTVCYGRPRTSHHGCFLLRFHRNSKWTLQCLISGRYLESNGKDVFCTSH
VLSAYHMWTPRPALHVHVILYSPIHRCYARADPTMGRIWVDAAVPCLEECGFLLHFRDGCYHLE
TSTHHFLSHVDRLFSQPSSQTAFHMQVRPGGLVALCDGEGGMLYPQGTHLLLGMGCNPMRGEEW
FILQHCPTWVSLRSKTGRFISVIYDGEVRAASERLNRMSLFQFECDSESPTVQLRSANGYYLSQ
RRHRAVMADGHPLESDTFFRMHWNCGRIILQSCRGRFLGIAPNSLLMANVILPGPNEEFGILFA
NRSFLVLRGRYGYVGSSSGHDLIQCNQDQPDRIHLLPCRPGIYHFQAQGGSFWSITSFGTFRPW
GKFALNFCIELQGSNLLTVLAPNGFYMRADQSGTLLADSEDITRECIWEF

hide sequence

RefSeq Acc Id:

ENSP00000473531 ⟸ ENST00000478821

RefSeq Acc Id:

ENSP00000402472 ⟸ ENST00000421705

RefSeq Acc Id:

ENSP00000265825 ⟸ ENST00000265825

Protein Domains

Fascin

Promoters

RGD ID:

6805701

Promoter ID:

HG_KWN:59594

Type:

Non-CpG

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

HeLa_S3, Lymphoblastoid

Transcripts:

OTTHUMT00000059256, OTTHUMT00000141969, OTTHUMT00000141970, OTTHUMT00000141975, OTTHUMT00000141976, UC010LLC.1

Position:

Human Assembly	Chr	Position (strand)	Source
Build 36	7	127,020,111 - 127,021,067 (-)	MPROMDB

RGD ID:

7211839

Promoter ID:

EPDNEW_H11664

Type:

initiation region

Name:

FSCN3_1

Description:

fascin actin-bundling protein 3

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

Experiment Methods:

Single-end sequencing.; Paired-end sequencing.

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	7	127,588,447 - 127,588,507	EPDNEW

RGD ID:

7211849

Promoter ID:

EPDNEW_H11666

Type:

initiation region

Name:

FSCN3_3

Description:

fascin actin-bundling protein 3

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

Experiment Methods:

Single-end sequencing.; Paired-end sequencing.

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	7	127,589,137 - 127,589,197	EPDNEW

RGD ID:

7211841

Promoter ID:

EPDNEW_H11667

Type:

initiation region

Name:

FSCN3_2

Description:

fascin actin-bundling protein 3

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

Experiment Methods:

Single-end sequencing.; Paired-end sequencing.

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	7	127,589,596 - 127,589,656	EPDNEW

RGD ID:

7211843

Promoter ID:

EPDNEW_H11668

Type:

initiation region

Name:

FSCN3_4

Description:

fascin actin-bundling protein 3

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

Experiment Methods:

Single-end sequencing.; Paired-end sequencing.

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	7	127,590,034 - 127,590,094	EPDNEW

RGD ID:

7211845

Promoter ID:

EPDNEW_H11669

Type:

initiation region

Name:

FSCN3_7

Description:

fascin actin-bundling protein 3

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

Experiment Methods:

Single-end sequencing.; Paired-end sequencing.

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	7	127,591,018 - 127,591,078	EPDNEW

RGD ID:

7211847

Promoter ID:

EPDNEW_H11670

Type:

initiation region

Name:

FSCN3_5

Description:

fascin actin-bundling protein 3

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

Experiment Methods:

Single-end sequencing.

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	7	127,591,310 - 127,591,370	EPDNEW

RGD ID:

7211851

Promoter ID:

EPDNEW_H11671

Type:

initiation region

Name:

FSCN3_6

Description:

fascin actin-bundling protein 3

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

Experiment Methods:

Single-end sequencing.

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	7	127,593,659 - 127,593,719	EPDNEW

Clinical Variants

Name	Type	Condition(s)	Position(s)	Clinical significance
GRCh38/hg38 7p22.3-q36.3(chr7:53985-159282531)x1	copy number loss	See cases [RCV000052250]	Chr7:53985..159282531 [GRCh38] Chr7:53985..159075220 [GRCh37] Chr7:149068..158767981 [NCBI36] Chr7:7p22.3-q36.3	pathogenic
GRCh38/hg38 7q31.33-32.3(chr7:126859732-132750936)x1	copy number loss	See cases [RCV000054171]	Chr7:126859732..132750936 [GRCh38] Chr7:126499786..132435696 [GRCh37] Chr7:126287022..132086236 [NCBI36] Chr7:7q31.33-32.3	pathogenic
GRCh38/hg38 7p22.3-q36.3(chr7:54185-159282390)x1	copy number loss	See cases [RCV000135401]	Chr7:54185..159282390 [GRCh38] Chr7:54185..159075079 [GRCh37] Chr7:149268..158767840 [NCBI36] Chr7:7p22.3-q36.3	pathogenic
GRCh38/hg38 7q21.3-36.3(chr7:97419852-158923762)x3	copy number gain	See cases [RCV000136717]	Chr7:97419852..158923762 [GRCh38] Chr7:97049164..158716453 [GRCh37] Chr7:96887100..158409214 [NCBI36] Chr7:7q21.3-36.3	pathogenic
GRCh38/hg38 7q31.32-32.1(chr7:123829366-127947731)x1	copy number loss	See cases [RCV000137416]	Chr7:123829366..127947731 [GRCh38] Chr7:123469420..127587784 [GRCh37] Chr7:123256656..127375020 [NCBI36] Chr7:7q31.32-32.1	likely pathogenic
GRCh38/hg38 7q31.2-33(chr7:117326805-134790689)x1	copy number loss	See cases [RCV000138226]	Chr7:117326805..134790689 [GRCh38] Chr7:116966859..134475440 [GRCh37] Chr7:116754095..134125980 [NCBI36] Chr7:7q31.2-33	pathogenic
GRCh38/hg38 7q31.32-36.3(chr7:121863759-159335865)x3	copy number gain	See cases [RCV000138847]	Chr7:121863759..159335865 [GRCh38] Chr7:121503813..159128555 [GRCh37] Chr7:121291049..158821316 [NCBI36] Chr7:7q31.32-36.3	pathogenic
GRCh38/hg38 7q31.2-36.3(chr7:115459015-159325817)x3	copy number gain	See cases [RCV000141413]	Chr7:115459015..159325817 [GRCh38] Chr7:115099069..159118507 [GRCh37] Chr7:114886305..158811268 [NCBI36] Chr7:7q31.2-36.3	pathogenic
GRCh38/hg38 7q31.33-33(chr7:124170657-134163594)x1	copy number loss	See cases [RCV000142552]	Chr7:124170657..134163594 [GRCh38] Chr7:123810711..133848346 [GRCh37] Chr7:123597947..133498886 [NCBI36] Chr7:7q31.33-33	pathogenic
GRCh38/hg38 7q31.32-32.1(chr7:122018122-128907727)x1	copy number loss	See cases [RCV000142521]	Chr7:122018122..128907727 [GRCh38] Chr7:121658176..128547780 [GRCh37] Chr7:121445412..128335016 [NCBI36] Chr7:7q31.32-32.1	pathogenic
GRCh37/hg19 7q31.1-32.1(chr7:111613396-127897316)x1	copy number loss	See cases [RCV000240177]	Chr7:111613396..127897316 [GRCh37] Chr7:7q31.1-32.1	pathogenic
TMEM106B-BRAF fusion	deletion	Pleomorphic xanthoastrocytoma [RCV000454357]	Chr7:12258147..140494267 [GRCh37] Chr7:7p21.3-q34	pathogenic
GRCh37/hg19 7p22.3-q36.3(chr7:43360-159119707)x1	copy number loss	See cases [RCV000446044]	Chr7:43360..159119707 [GRCh37] Chr7:7p22.3-q36.3	pathogenic
GRCh37/hg19 7q22.1-36.3(chr7:98969247-159119707)x3	copy number gain	See cases [RCV000447709]	Chr7:98969247..159119707 [GRCh37] Chr7:7q22.1-36.3	pathogenic
GRCh37/hg19 7p22.3-q36.3(chr7:43361-159119707)	copy number gain	See cases [RCV000510686]	Chr7:43361..159119707 [GRCh37] Chr7:7p22.3-q36.3	pathogenic
GRCh37/hg19 7p22.3-q36.3(chr7:43361-159119707)x3	copy number gain	See cases [RCV000511549]	Chr7:43361..159119707 [GRCh37] Chr7:7p22.3-q36.3	pathogenic
GRCh37/hg19 7q32.1(chr7:127186082-127723736)x3	copy number gain	See cases [RCV000512583]	Chr7:127186082..127723736 [GRCh37] Chr7:7q32.1	uncertain significance
GRCh37/hg19 7q22.1-36.3(chr7:98693388-159119707)x3	copy number gain	not provided [RCV000682911]	Chr7:98693388..159119707 [GRCh37] Chr7:7q22.1-36.3	pathogenic
GRCh37/hg19 7p22.3-q36.3(chr7:44935-159126310)x3	copy number gain	not provided [RCV000746280]	Chr7:44935..159126310 [GRCh37] Chr7:7p22.3-q36.3	pathogenic
GRCh37/hg19 7p22.3-q36.3(chr7:10704-159122532)x3	copy number gain	not provided [RCV000746278]	Chr7:10704..159122532 [GRCh37] Chr7:7p22.3-q36.3	pathogenic
GRCh37/hg19 7p22.3-q36.3(chr7:10365-159119707)x3	copy number gain	not provided [RCV000848126]	Chr7:10365..159119707 [GRCh37] Chr7:7p22.3-q36.3	pathogenic
GRCh37/hg19 7q31.32-32.2(chr7:121480906-129389003)x1	copy number loss	not provided [RCV000847911]	Chr7:121480906..129389003 [GRCh37] Chr7:7q31.32-32.2	pathogenic
GRCh37/hg19 7q31.1-36.3(chr7:109251060-159119707)x3	copy number gain	not provided [RCV001005994]	Chr7:109251060..159119707 [GRCh37] Chr7:7q31.1-36.3	pathogenic

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	HGNC:3961	AgrOrtholog
COSMIC	FSCN3	COSMIC
Ensembl Genes	ENSG00000106328	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein	ENSP00000265825	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSP00000402472	UniProtKB/TrEMBL
	ENSP00000473531	UniProtKB/TrEMBL
Ensembl Transcript	ENST00000265825	ENTREZGENE, UniProtKB/Swiss-Prot
	ENST00000421705	UniProtKB/TrEMBL
	ENST00000478821	UniProtKB/TrEMBL
GTEx	ENSG00000106328	GTEx
HGNC ID	HGNC:3961	ENTREZGENE
Human Proteome Map	FSCN3	Human Proteome Map
InterPro	Actin-crosslinking	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Fascin	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Fascin-domain	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Fascin_metazoans	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	FSCN3	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	hsa:29999	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene	29999	ENTREZGENE
OMIM	615800	OMIM
PANTHER	PTHR10551	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PTHR10551:SF1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	Fascin	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB	PA28379	PharmGKB
PIRSF	Fascin	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	SSF50405	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A140VK18	ENTREZGENE, UniProtKB/TrEMBL
	F8WDZ8_HUMAN	UniProtKB/TrEMBL
	FSCN3_HUMAN	UniProtKB/Swiss-Prot, ENTREZGENE
	R4GN86_HUMAN	UniProtKB/TrEMBL
UniProt Secondary	A4D0Z2	UniProtKB/Swiss-Prot
	A6NLL7	UniProtKB/Swiss-Prot
	B2RA62	UniProtKB/Swiss-Prot
	B4DU68	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2015-12-01	FSCN3	fascin actin-bundling protein 3		fascin actin-bundling protein 3, testicular	Symbol and/or name change	5135510	APPROVED
2014-02-11	FSCN3	fascin actin-bundling protein 3, testicular		fascin homolog 3, actin-bundling protein, testicular (Strongylocentrotus purpuratus)	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar