FIBP (FGF1 intracellular binding protein) - Rat Genome Database

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Gene: FIBP (FGF1 intracellular binding protein) Homo sapiens
Analyze
Symbol: FIBP
Name: FGF1 intracellular binding protein
RGD ID: 1353732
HGNC Page HGNC
Description: Exhibits fibroblast growth factor binding activity. Involved in platelet aggregation. Localizes to membrane and nuclear speck.
Type: protein-coding
RefSeq Status: REVIEWED
Also known as: acidic fibroblast growth factor intracellular-binding protein; aFGF intracellular-binding protein; FGF-1 intracellular-binding protein; FGFIBP; FIBP-1; TROFAS
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1165,883,740 - 65,888,531 (-)EnsemblGRCh38hg38GRCh38
GRCh38.p13 Ensembl1165,883,741 - 65,888,539 (-)EnsemblGRCh38hg38GRCh38
GRCh381165,883,740 - 65,888,510 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371165,651,211 - 65,655,942 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361165,407,787 - 65,412,586 (-)NCBINCBI36hg18NCBI36
Build 341165,407,786 - 65,412,586NCBI
Celera1162,975,116 - 62,979,917 (-)NCBI
Cytogenetic Map11q13.1NCBI
HuRef1161,977,728 - 61,982,391 (-)NCBIHuRef
CHM1_11165,535,625 - 65,540,424 (-)NCBICHM1_1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
Abnormal facial shape  (IAGP)
Abnormal femoral torsion  (IAGP)
Abnormal right ventricle morphology  (IAGP)
Abnormal thumb morphology  (IAGP)
Astigmatism  (IAGP)
Autosomal recessive inheritance  (IAGP)
Bifid ureter  (IAGP)
Birth length greater than 97th percentile  (IAGP)
Bowing of the legs  (IAGP)
Camptodactyly  (IAGP)
Cataract  (IAGP)
Chronic neutropenia  (IAGP)
Coloboma  (IAGP)
Deeply set eye  (IAGP)
Delayed speech and language development  (IAGP)
Downslanted palpebral fissures  (IAGP)
Enlarged kidney  (IAGP)
Epicanthus  (IAGP)
Global developmental delay  (IAGP)
Hypertelorism  (IAGP)
Inguinal hernia  (IAGP)
Intellectual disability  (IAGP)
Intellectual disability, mild  (IAGP)
Large for gestational age  (IAGP)
Large hands  (IAGP)
Long foot  (IAGP)
Long hallux  (IAGP)
Long palpebral fissure  (IAGP)
Macrocephaly  (IAGP)
Macroglossia  (IAGP)
Macrotia  (IAGP)
Metatarsus adductus  (IAGP)
Midface retrusion  (IAGP)
Mitral valve prolapse  (IAGP)
Multicystic kidney dysplasia  (IAGP)
Nephroblastoma  (IAGP)
Overgrowth  (IAGP)
Pes planus  (IAGP)
Proportionate tall stature  (IAGP)
Protruding ear  (IAGP)
Renal cyst  (IAGP)
Renal dysplasia  (IAGP)
Renal malrotation  (IAGP)
Retinal coloboma  (IAGP)
Round face  (IAGP)
Sensorineural hearing impairment  (IAGP)
Specific learning disability  (IAGP)
Spina bifida occulta  (IAGP)
Strabismus  (IAGP)
Talipes equinovarus  (IAGP)
Thick vermilion border  (IAGP)
Tibial bowing  (IAGP)
Tibial torsion  (IAGP)
Transient neutropenia  (IAGP)
Varicose veins  (IAGP)
Ventricular septal defect  (IAGP)
References

Additional References at PubMed
PMID:8125298   PMID:9806903   PMID:11104667   PMID:11509569   PMID:12145206   PMID:12477932   PMID:15489334   PMID:16169070   PMID:17353931   PMID:17497037   PMID:19913121   PMID:20628086  
PMID:21832049   PMID:21873635   PMID:21900206   PMID:23128233   PMID:23376485   PMID:23382103   PMID:23455922   PMID:23602568   PMID:24927181   PMID:25096995   PMID:25544563   PMID:25648896  
PMID:25852190   PMID:25940091   PMID:26186194   PMID:26496610   PMID:27183861   PMID:28514442   PMID:29395067   PMID:29513927   PMID:29576527   PMID:30404004   PMID:31753913   PMID:32694731  


Genomics

Comparative Map Data
FIBP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1165,883,740 - 65,888,531 (-)EnsemblGRCh38hg38GRCh38
GRCh38.p13 Ensembl1165,883,741 - 65,888,539 (-)EnsemblGRCh38hg38GRCh38
GRCh381165,883,740 - 65,888,510 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371165,651,211 - 65,655,942 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361165,407,787 - 65,412,586 (-)NCBINCBI36hg18NCBI36
Build 341165,407,786 - 65,412,586NCBI
Celera1162,975,116 - 62,979,917 (-)NCBI
Cytogenetic Map11q13.1NCBI
HuRef1161,977,728 - 61,982,391 (-)NCBIHuRef
CHM1_11165,535,625 - 65,540,424 (-)NCBICHM1_1
Fibp
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39195,510,626 - 5,515,080 (+)NCBIGRCm39mm39
GRCm39 Ensembl195,510,643 - 5,515,079 (+)Ensembl
GRCm38195,460,598 - 5,465,052 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl195,460,615 - 5,465,051 (+)EnsemblGRCm38mm10GRCm38
MGSCv37195,460,694 - 5,464,994 (+)NCBIGRCm37mm9NCBIm37
MGSCv36195,460,694 - 5,464,994 (+)NCBImm8
Celera195,332,667 - 5,336,966 (+)NCBICelera
Cytogenetic Map19ANCBI
Fibp
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21202,768,065 - 202,772,405 (+)NCBI
Rnor_6.0 Ensembl1220,840,118 - 220,844,405 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01220,840,078 - 220,844,412 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01227,769,417 - 227,773,736 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41208,104,191 - 208,108,458 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11208,257,643 - 208,261,911 (+)NCBI
Celera1200,304,217 - 200,308,483 (+)NCBICelera
Cytogenetic Map1q43NCBI
Fibp
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542219,435,380 - 19,440,095 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542219,435,528 - 19,440,095 (+)NCBIChiLan1.0ChiLan1.0
FIBP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11164,573,537 - 64,578,328 (-)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v01161,244,175 - 61,248,805 (-)NCBIMhudiblu_PPA_v0panPan3
FIBP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11851,377,757 - 51,381,872 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1851,377,797 - 51,381,808 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1849,986,258 - 49,990,366 (+)NCBI
ROS_Cfam_1.01852,415,825 - 52,419,933 (+)NCBI
UMICH_Zoey_3.11851,515,899 - 51,520,005 (+)NCBI
UNSW_CanFamBas_1.01851,090,261 - 51,094,371 (+)NCBI
UU_Cfam_GSD_1.01851,879,581 - 51,883,689 (+)NCBI
LOC101962602
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049477,210,533 - 7,214,822 (+)NCBI
SpeTri2.0NW_0049365993,652,889 - 3,657,171 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FIBP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl26,440,390 - 6,445,927 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.126,440,483 - 6,445,927 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.225,544,508 - 5,549,953 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103225725
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.118,369,279 - 8,374,246 (+)NCBI
Fibp
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462476720,528,750 - 20,533,272 (+)NCBI

Position Markers
D11S3700  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371165,653,859 - 65,654,140UniSTSGRCh37
Build 361165,410,435 - 65,410,716RGDNCBI36
Celera1162,977,764 - 62,978,045RGD
Cytogenetic Map11q13.1UniSTS
HuRef1161,980,376 - 61,980,657UniSTS
D1S1423  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map10p12.1UniSTS
Cytogenetic Map10p12.1-p11.2UniSTS
Cytogenetic Map9q34.13UniSTS
Cytogenetic Map16q22.1UniSTS
Cytogenetic Map21q22.2UniSTS
Cytogenetic Map3p24.2UniSTS
Cytogenetic Map9q32UniSTS
Cytogenetic Map1q24UniSTS
Cytogenetic Map1q21UniSTS
Cytogenetic Map1p36.33UniSTS
Cytogenetic Map7p15.2UniSTS
Cytogenetic Map6p21UniSTS
Cytogenetic Map5q31UniSTS
Cytogenetic Map6p22.3-p21.32UniSTS
Cytogenetic Map6q22.33UniSTS
Cytogenetic Map3q29UniSTS
Cytogenetic Map17p11.2UniSTS
Cytogenetic Map19q13.3UniSTS
Cytogenetic Map1p36.13UniSTS
Cytogenetic Map5q33.3UniSTS
Cytogenetic Map22q11.22UniSTS
Cytogenetic Map11q13.2-q13.3UniSTS
Cytogenetic Map3q22-q24UniSTS
Cytogenetic Map8p21.3UniSTS
Cytogenetic Map7q32UniSTS
Cytogenetic Map1p32.3UniSTS
Cytogenetic Map19p13.12UniSTS
Cytogenetic Map4q21.1UniSTS
Cytogenetic Map12q13.13UniSTS
Cytogenetic Map7q11.2UniSTS
Cytogenetic Map1p22.1UniSTS
Cytogenetic Map2q32UniSTS
Cytogenetic MapXq13.1UniSTS
Cytogenetic Map9q12UniSTS
Cytogenetic Map3q26.2UniSTS
Cytogenetic Map22q11.21UniSTS
Cytogenetic Map10q23-q24UniSTS
Cytogenetic Map17q12UniSTS
Cytogenetic Map1p36.21UniSTS
Cytogenetic Map19p13.2UniSTS
Cytogenetic Map16q24.3UniSTS
Cytogenetic Map9q34.3UniSTS
Cytogenetic Map4p14UniSTS
Cytogenetic Map2p12UniSTS
Cytogenetic Map16p11.2UniSTS
Cytogenetic Map3q23UniSTS
Cytogenetic Map18q22.1UniSTS
Cytogenetic Map13q12UniSTS
Cytogenetic Map10p14-p13UniSTS
Cytogenetic Map12p13.31UniSTS
Cytogenetic Map14q24.3UniSTS
Cytogenetic Map22q13.2UniSTS
Cytogenetic Map19q13.11UniSTS
Cytogenetic Map11q23-q24UniSTS
Cytogenetic Map11q13.1UniSTS
Cytogenetic Map12q24.31UniSTS
Cytogenetic Map17q25UniSTS
Cytogenetic Map16q24.1UniSTS
Cytogenetic Map5q23.3UniSTS
Cytogenetic Map19q13.43UniSTS
Cytogenetic Map17q11.2UniSTS
Cytogenetic Map20q13.12UniSTS
Cytogenetic MapXp11.23UniSTS
Cytogenetic Map19q13.42UniSTS
Cytogenetic Map16q13UniSTS
Cytogenetic Map11q25UniSTS
Cytogenetic Map22cen-q12.3UniSTS
Cytogenetic Map10p13UniSTS
Cytogenetic Map2p11.2UniSTS
Cytogenetic Map15q11.2-q21.3UniSTS
Cytogenetic Map1p21.2UniSTS
Cytogenetic Map19p13UniSTS
Cytogenetic Map7q21.13UniSTS
Cytogenetic Map7q31.1UniSTS
Cytogenetic Map17p13.3UniSTS
Cytogenetic Map1p35.1UniSTS
Cytogenetic Map16q24UniSTS
Cytogenetic Map3q25UniSTS
Cytogenetic Map2q24.2UniSTS
Cytogenetic Map1p31.3UniSTS
Cytogenetic Map14q31.1UniSTS
Cytogenetic Map22q13.1UniSTS
Cytogenetic Map20q13.31UniSTS
Cytogenetic Map19p13.3UniSTS
Cytogenetic Map6p12.1UniSTS
Cytogenetic Map6q25.3UniSTS
Cytogenetic Map1q32.1UniSTS
Cytogenetic Map11q24.2UniSTS
Cytogenetic Map10p15.1UniSTS
Cytogenetic Map2p13.1UniSTS
Cytogenetic Map19q13.12UniSTS
Cytogenetic Map12p13.32UniSTS
Cytogenetic Map4q35.1UniSTS
Cytogenetic Map2p13.3UniSTS
Cytogenetic Map1p22UniSTS
Cytogenetic Map2q14UniSTS
Cytogenetic Map4q12UniSTS
Cytogenetic Map16p13.3UniSTS
Cytogenetic Map14q32.33UniSTS
Cytogenetic Map1p36.1UniSTS
Cytogenetic Map8p11.21UniSTS
Cytogenetic MapXq26.3UniSTS
Cytogenetic Map8q24.11UniSTS
Cytogenetic Map9q22.31UniSTS
Cytogenetic Map7q11.23UniSTS
Cytogenetic Map2p15UniSTS
Cytogenetic Map5q31.1UniSTS
Cytogenetic Map8q24.13UniSTS
Cytogenetic Map17p13UniSTS
Cytogenetic Map8p11.22UniSTS
Cytogenetic Map4q28UniSTS
Cytogenetic Map15q24.1UniSTS
Cytogenetic Map1q41-q42UniSTS
Cytogenetic Map10q22UniSTS
Cytogenetic Map5q35.3UniSTS
Cytogenetic Map20q11.21UniSTS
Cytogenetic Map8q24.3UniSTS
Cytogenetic Map12p13.1-p12.3UniSTS
Cytogenetic Map6p21.33UniSTS
Cytogenetic Map22q13.33UniSTS
Cytogenetic Map19p12UniSTS
Cytogenetic Map1p13.1UniSTS
Cytogenetic Map7q22.1UniSTS
Cytogenetic Map14q12UniSTS
Cytogenetic Map19q13.32UniSTS
Cytogenetic Map11q13.2UniSTS
Cytogenetic Map15q22.31UniSTS
Cytogenetic Map5q12.3UniSTS
Cytogenetic Map7q33UniSTS
Cytogenetic Map17q21.2UniSTS
Cytogenetic Map4q23UniSTS
Cytogenetic Map12q13.12UniSTS
Cytogenetic Map18p11.21UniSTS
Cytogenetic Map10q26.11UniSTS
Cytogenetic Map14q32.12UniSTS
Cytogenetic Map11q24.1UniSTS
Cytogenetic Map18q23UniSTS
Cytogenetic Map2q31.1UniSTS
Cytogenetic Map18p11.31UniSTS
Cytogenetic Map2q24.3UniSTS
Cytogenetic Map11q23UniSTS
Cytogenetic Map17q21.31UniSTS
Cytogenetic Map13q34UniSTS
Cytogenetic Map1p34.3UniSTS
Cytogenetic Map10p14UniSTS
Cytogenetic Map15q22.2UniSTS
Cytogenetic Map17q25.1UniSTS
Cytogenetic Map5q32UniSTS
Cytogenetic Map4p16.3UniSTS
Cytogenetic Map12q23.2UniSTS
Cytogenetic Map11q12.3UniSTS
Cytogenetic Map16q12.2UniSTS
Cytogenetic Map9q22.2UniSTS
Cytogenetic Map1q21.3UniSTS
Cytogenetic Map1p35.3UniSTS
Cytogenetic Map19q13.2UniSTS
Cytogenetic Map11p15.5UniSTS
Cytogenetic Map7q22UniSTS
Cytogenetic Map18p11.31-p11.21UniSTS
Cytogenetic Map3p25.3UniSTS
Cytogenetic Map3q13UniSTS
Cytogenetic Map21q22.3UniSTS
Cytogenetic Map1q43UniSTS
Cytogenetic Map19p13.11UniSTS
Cytogenetic Map19q13.41UniSTS
Cytogenetic Map7p21.2UniSTS
Cytogenetic Map12q21.1UniSTS
Cytogenetic Map15q15.1UniSTS
Cytogenetic Map15q13.1UniSTS
Cytogenetic Map1q42.1UniSTS
Cytogenetic Map5q31.2UniSTS
Cytogenetic Map1q21.2UniSTS
Cytogenetic Map17p13.1UniSTS
Cytogenetic Map1p34-p33UniSTS
Cytogenetic Map3q22.1UniSTS
Cytogenetic Map7p14UniSTS
Cytogenetic Map15q21UniSTS
Cytogenetic Map12q24.2UniSTS
Cytogenetic Map20q13UniSTS
Cytogenetic Map19q13.3-q13.4UniSTS
Cytogenetic Map17q21.32UniSTS
Cytogenetic Map15q11.2UniSTS
Cytogenetic Map8p23-p22UniSTS
Cytogenetic Map1p12UniSTS
Cytogenetic Map3q13.33UniSTS
Cytogenetic Map10p12.33UniSTS
Cytogenetic Map5q13.2UniSTS
Cytogenetic Map3q26UniSTS
Cytogenetic Map9p21.2UniSTS
Cytogenetic Map2p16.1UniSTS
Cytogenetic Map5q21.3UniSTS
Cytogenetic Map1p36.22UniSTS
Cytogenetic Map1p34.2UniSTS
Cytogenetic Map3q26.31UniSTS
Cytogenetic MapXp22.33UniSTS
Cytogenetic MapYp11.3UniSTS
Cytogenetic Map17q24.1UniSTS
Cytogenetic Map9q21.11UniSTS
Cytogenetic Map6q22.31UniSTS
Cytogenetic Map9q21.13UniSTS
Cytogenetic Map10q11.22UniSTS
Cytogenetic Map22q13.31UniSTS
Cytogenetic Map17p12UniSTS
Cytogenetic Map17q21.33UniSTS
Cytogenetic Map5p13.3UniSTS
Cytogenetic Map10q21.3UniSTS
Cytogenetic Map10q22.1UniSTS
Cytogenetic Map1p34UniSTS
Cytogenetic MapXp22UniSTS
Cytogenetic Map20p12.3-p11.21UniSTS
Cytogenetic Map2q37.1UniSTS
Cytogenetic Map6p25UniSTS
Cytogenetic MapXq27.2UniSTS
Cytogenetic Map4q31.1UniSTS
Cytogenetic Map4q31UniSTS
Cytogenetic Map22q13.1-q13.2UniSTS
Cytogenetic MapXq28UniSTS
Cytogenetic Map1p36.11UniSTS
Cytogenetic Map12q13.3UniSTS
Cytogenetic Map3q26.33UniSTS
Cytogenetic Map19q13.4UniSTS
Cytogenetic Map14q32UniSTS
Cytogenetic Map10q24.3UniSTS
Cytogenetic Map16q21UniSTS
Cytogenetic Map2p13UniSTS
Cytogenetic Map19q13.1UniSTS
Cytogenetic Map7q21-q22UniSTS
Cytogenetic Map2q11.2UniSTS
Cytogenetic Map17q25.3UniSTS
Cytogenetic Map4q22.1UniSTS
Cytogenetic Map11q22.1UniSTS
Cytogenetic Map12q14.2UniSTS
Cytogenetic Map20p13UniSTS
Cytogenetic Map7q36.3UniSTS
Cytogenetic Map20q11.21-q11.23UniSTS
Cytogenetic Map2q33.2UniSTS
Cytogenetic Map12q22UniSTS
Cytogenetic Map20q13.13UniSTS
Cytogenetic Map21p11.1UniSTS
Cytogenetic Map1p35-p34.3UniSTS
Cytogenetic Map7p11.2UniSTS
Cytogenetic Map13q14UniSTS
Cytogenetic Map7q36.1UniSTS
Cytogenetic Map12q24.31-q24.32UniSTS
Cytogenetic Map17q21.1UniSTS
Cytogenetic Map3q12.3UniSTS
Cytogenetic Map12qUniSTS
Cytogenetic Map11q13.5UniSTS
Cytogenetic Map2p14UniSTS
Cytogenetic Map2q14.3UniSTS
Cytogenetic Map7q34UniSTS
Cytogenetic Map14q32.1UniSTS
Cytogenetic Map21q22.11UniSTS
Cytogenetic Map3p14.1UniSTS
Cytogenetic Map16q23.2UniSTS
Cytogenetic Map7q32.1UniSTS
Cytogenetic Map17q22UniSTS
Cytogenetic Map4q31.23UniSTS
Cytogenetic Map11p15.3UniSTS
Cytogenetic Map3q27.1UniSTS
Cytogenetic Map2p22.3UniSTS
Cytogenetic Map22q13UniSTS
Cytogenetic Map1q32UniSTS
Cytogenetic Map11q14UniSTS
Cytogenetic MapXq13.2UniSTS
Cytogenetic Map16p13.12UniSTS
Cytogenetic MapXq22.3UniSTS
Cytogenetic Map9p12UniSTS
Cytogenetic Map4p16.1UniSTS
Cytogenetic Map11q23.1UniSTS
Cytogenetic Map3q27.3UniSTS
Cytogenetic Map16q23.1UniSTS
Cytogenetic Map15q15.2UniSTS
Cytogenetic Map2p21UniSTS
Cytogenetic Map13q33.3UniSTS
Cytogenetic Map15q22-q24UniSTS
Cytogenetic Map14q32.11UniSTS
Cytogenetic Map7p14.3UniSTS
Cytogenetic Map14q21.2UniSTS
Cytogenetic Map15q25.2UniSTS
Cytogenetic Map15q23UniSTS
Cytogenetic Map2p23.3UniSTS
Cytogenetic Map4p15.31UniSTS
Cytogenetic Map1q22UniSTS
Cytogenetic Map20q13.1UniSTS
Cytogenetic Map15q21.3UniSTS
Cytogenetic Map10q23.33UniSTS
Cytogenetic Map4q26UniSTS
Cytogenetic MapXq24UniSTS
Cytogenetic Map10q23.1UniSTS
Cytogenetic Map6p21.1UniSTS
Cytogenetic Map15q22.1-q22.31UniSTS
Cytogenetic Map1q31-q41UniSTS
Cytogenetic Map6q23.3UniSTS
Cytogenetic Map7q21.2UniSTS
Cytogenetic Map14q23UniSTS
Cytogenetic Map12q11-q12UniSTS
Cytogenetic Map17q23.3UniSTS
Cytogenetic Map4q24UniSTS
Cytogenetic Map1p32UniSTS
Cytogenetic Map3p21.1-p14.2UniSTS
Cytogenetic Map12q22-q23.1UniSTS
Cytogenetic Map6p22.1UniSTS
Cytogenetic Map6q24.2UniSTS
Cytogenetic Map9p13.3UniSTS
Cytogenetic Map6p24.1UniSTS
Cytogenetic Map19q13UniSTS
Cytogenetic Map20q11.22-q11.23UniSTS
Cytogenetic Map3p22.3UniSTS
Cytogenetic Map12q12UniSTS
Cytogenetic MapXq13-q21UniSTS
Cytogenetic Map9q34.11UniSTS
Cytogenetic Map16p13.13UniSTS
Cytogenetic Map10pter-q25.3UniSTS
Cytogenetic Map9p24.1UniSTS
Cytogenetic Map12p13.2UniSTS
Cytogenetic Map12q24UniSTS
Cytogenetic Map3q28-q29UniSTS
Cytogenetic Map10q26UniSTS
Cytogenetic Map6p22.2UniSTS
Cytogenetic Map2q13UniSTS
Cytogenetic Map12q24.2-q24.31UniSTS
Cytogenetic Map22q12.2UniSTS
Cytogenetic Map1q32.2-q41UniSTS
Cytogenetic Map11q22-q23UniSTS
Cytogenetic Map12p13.3UniSTS
Cytogenetic Map1p34.1UniSTS
Cytogenetic Map22q11UniSTS
Cytogenetic Map2q21.1UniSTS
Cytogenetic Map16p13.11UniSTS
Cytogenetic Map1q25.1UniSTS
Cytogenetic Map1p36.3UniSTS
Cytogenetic Map9p21UniSTS
Cytogenetic Map6p21.3UniSTS
Cytogenetic Map1q41UniSTS
Cytogenetic Map11q13.1-q13.3UniSTS
Cytogenetic Map16p13UniSTS
Cytogenetic Map15q26UniSTS
Cytogenetic Map18q21UniSTS
Cytogenetic Map4p15.1-p14UniSTS
Cytogenetic Map8q11.2UniSTS
Cytogenetic Map16q22UniSTS
Cytogenetic Map15q11-q13UniSTS
Cytogenetic Map7p12.3UniSTS
Cytogenetic Map7p13UniSTS
Cytogenetic Map15q26.1UniSTS
Cytogenetic Map14q22.1UniSTS
Cytogenetic Map2q12.3UniSTS
Cytogenetic MapXp22.12UniSTS
Cytogenetic Map20q11.23UniSTS
Cytogenetic Map1q21.1UniSTS
Cytogenetic Map1p36.31UniSTS
Cytogenetic Map16q11.2UniSTS
Cytogenetic Map14q32.2UniSTS
Cytogenetic Map11p15.4UniSTS
Cytogenetic Map22q11.1UniSTS
Cytogenetic Map5q33.2UniSTS
Cytogenetic Map14q23.1UniSTS
Cytogenetic Map7q32.3UniSTS
Cytogenetic Map20q13.3UniSTS
Cytogenetic Map10q26.13UniSTS
Cytogenetic Map1p31.1UniSTS
Cytogenetic Map11q13.4UniSTS
Cytogenetic Map11q23.3UniSTS
Cytogenetic Map15q25.1UniSTS
Cytogenetic Map9p13UniSTS
Cytogenetic Map2p24.2UniSTS
Cytogenetic Map9q33.3UniSTS
Cytogenetic Map19q13.31UniSTS
Cytogenetic Map11q12.2UniSTS
Cytogenetic Map7p15.3UniSTS
Cytogenetic Map6p25.2UniSTS
Cytogenetic Map6q25.1UniSTS
Cytogenetic Map3p21.31UniSTS
Cytogenetic Map17q23.2UniSTS
Cytogenetic MapXq25UniSTS
Cytogenetic Map2p25.1UniSTS
Cytogenetic Map1q25.3UniSTS
Cytogenetic Map6p24-p22.3UniSTS
Cytogenetic Map6q21UniSTS
Cytogenetic Map16p12.2UniSTS
Cytogenetic Map3q21-q24UniSTS
Cytogenetic Map4q13UniSTS
Cytogenetic Map11p13UniSTS
Cytogenetic Map9q34UniSTS
Cytogenetic Map8q13.1UniSTS
Cytogenetic Map5q21.2UniSTS
Cytogenetic Map4q34.3UniSTS
Cytogenetic Map3p22.1UniSTS
Cytogenetic Map2q37.3UniSTS
Cytogenetic Map8p23.1UniSTS
Cytogenetic Map1p13.3UniSTS
Cytogenetic Map15q14UniSTS
Cytogenetic Map13q13.3UniSTS
Cytogenetic Map12q13.2UniSTS
Cytogenetic Map1q31UniSTS
Cytogenetic Map7q11.21UniSTS
Cytogenetic Map10q26.3UniSTS
Cytogenetic Map15q15UniSTS
Cytogenetic MapXp11.4UniSTS
Cytogenetic Map8q24.12UniSTS
Cytogenetic Map15q22UniSTS
Cytogenetic Map1q25.2UniSTS
Cytogenetic Map13q11-q12UniSTS
Cytogenetic Map10q24.2UniSTS
Cytogenetic Map15q21.1UniSTS
Cytogenetic Map15q13.2UniSTS
Cytogenetic Map6q25.2UniSTS
Cytogenetic Map14q11.2UniSTS
Cytogenetic Map2q33.1UniSTS
Cytogenetic Map6q14.1UniSTS
Cytogenetic Map3q23-q24UniSTS
Cytogenetic Map2p25.1-p24.1UniSTS
Cytogenetic Map12q14.3UniSTS
Cytogenetic Map6q16.1UniSTS
Cytogenetic Map5p13.1UniSTS
Cytogenetic Map5q13UniSTS
Cytogenetic Map20pter-p12UniSTS
Cytogenetic MapXp22.11UniSTS
Cytogenetic Map16p13.2UniSTS
Cytogenetic Map16q22.3UniSTS
Cytogenetic Map7q31.3UniSTS
Cytogenetic Map21q22.13UniSTS
Cytogenetic Map1p21UniSTS
Cytogenetic Map8p11UniSTS
Cytogenetic Map7p14.2UniSTS
Cytogenetic Map8p11.23UniSTS
Cytogenetic Map18p11.22UniSTS
Cytogenetic Map18q21.33UniSTS
Cytogenetic Map9p24.3UniSTS
Cytogenetic Map11q22.3UniSTS
Cytogenetic Map14q22.2UniSTS
Cytogenetic Map20p11.22-p11.1UniSTS
Cytogenetic Map6p21.31UniSTS
Cytogenetic Map14q22.3UniSTS
Cytogenetic Map12q15UniSTS
Cytogenetic Map7q31UniSTS
Cytogenetic Map2q12.2UniSTS
Cytogenetic Map8p12UniSTS
Cytogenetic Map7p22.1UniSTS
Cytogenetic Map6p12.3UniSTS
Cytogenetic Map11q12-q13UniSTS
Cytogenetic Map18q21.1UniSTS
Cytogenetic Map10p11.21UniSTS
Cytogenetic Map6p22-p21UniSTS
Cytogenetic Map17q21.1-q21.3UniSTS
Cytogenetic Map12q24.33UniSTS
Cytogenetic Map4p15.32UniSTS
Cytogenetic Map1q42.13UniSTS
Cytogenetic Map19q12UniSTS
Cytogenetic Map3p14.3UniSTS
Cytogenetic Map12p13.2-p12.3UniSTS
Cytogenetic Map9q22.32UniSTS
Cytogenetic Map1p36.3-p36.2UniSTS
Cytogenetic Map5q22.2UniSTS
Cytogenetic Map4p15.2UniSTS
Cytogenetic Map4p15.3UniSTS
Cytogenetic Map4q28.1UniSTS
Cytogenetic Map12q13.1-q13.2UniSTS
Cytogenetic Map19q13.33UniSTS
Cytogenetic Map1p31UniSTS
Cytogenetic Map17p13.2UniSTS
Cytogenetic Map15q15.3UniSTS
Cytogenetic Map13q14.11UniSTS
Cytogenetic Map9p22.3UniSTS
Cytogenetic Map8q22.2UniSTS
Cytogenetic Map8q21.11UniSTS
Cytogenetic Map22q12.1UniSTS
Cytogenetic Map3q13.2UniSTS
Cytogenetic Map2q35UniSTS
Cytogenetic Map2q33.3UniSTS
Cytogenetic Map8p22UniSTS
Cytogenetic Map10q22.2UniSTS
Cytogenetic Map20p12.1UniSTS
Cytogenetic Map6q13UniSTS
Cytogenetic Map6q22.32UniSTS
Cytogenetic Map5q34UniSTS
Cytogenetic Map5p15.2UniSTS
Cytogenetic Map5q11.2UniSTS
Cytogenetic Map2q36.1UniSTS
Cytogenetic Map18q11.2UniSTS
Cytogenetic Map18q12.2UniSTS
Cytogenetic Map14q21.3UniSTS
Cytogenetic Map13q33.1UniSTS
Cytogenetic Map12p11.21UniSTS
Cytogenetic Map12q23.1UniSTS
Cytogenetic Map16p12.1UniSTS
Cytogenetic Map2q33UniSTS
Cytogenetic Map5q12.1UniSTS
Cytogenetic Map12q24.13UniSTS
Cytogenetic Map13q14.2UniSTS
Cytogenetic Map7q36UniSTS
Cytogenetic Map10q22.3-q23.2UniSTS
Cytogenetic Map7p15UniSTS
Cytogenetic Map14q32.31UniSTS
Cytogenetic Map11q21UniSTS
Cytogenetic Map4q21.3UniSTS
Cytogenetic Map7p13-p12UniSTS
Cytogenetic Map8p21.2UniSTS
Cytogenetic Map4q22UniSTS
Cytogenetic Map11q13UniSTS
Cytogenetic Map3q12.1UniSTS
Cytogenetic Map7q21.1-q22UniSTS
Cytogenetic Map17q21UniSTS
Cytogenetic Map3q13.13-q13.2UniSTS
Cytogenetic Map3p21.3UniSTS
Cytogenetic Map13q32.2UniSTS
Cytogenetic Map3q26.32UniSTS
Cytogenetic Map15qUniSTS
Cytogenetic Map2p13.2UniSTS
Cytogenetic Map3p12.3UniSTS
Cytogenetic Map10q11.23UniSTS
Cytogenetic Map3q11.2UniSTS
Cytogenetic Map12q13.11UniSTS
Cytogenetic Map13q14.13UniSTS
Cytogenetic Map10q23UniSTS
Cytogenetic Map11p11.2UniSTS
Cytogenetic Map6q16.2UniSTS
Cytogenetic Map3q21.1UniSTS
Cytogenetic Map10q11.21UniSTS
Cytogenetic Map1p13.2UniSTS
Cytogenetic Map6p24.2UniSTS
Cytogenetic Map20q13.33UniSTS
D11S4749  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map11q13.1UniSTS
SGC31923  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371165,651,407 - 65,651,881UniSTSGRCh37
Celera1162,975,312 - 62,975,786UniSTS
Cytogenetic Map11q13.1UniSTS
HuRef1161,977,924 - 61,978,398UniSTS
GeneMap99-GB4 RH Map11247.67UniSTS
Whitehead-RH Map11335.8UniSTS
NCBI RH Map11573.2UniSTS
RH11778  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371165,651,400 - 65,652,065UniSTSGRCh37
Celera1162,975,305 - 62,975,970UniSTS
Cytogenetic Map11q13.1UniSTS
HuRef1161,977,917 - 61,978,582UniSTS
GeneMap99-GB4 RH Map11247.03UniSTS
NCBI RH Map11573.2UniSTS

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:3586
Count of miRNA genes:1000
Interacting mature miRNAs:1245
Transcripts:ENST00000338369, ENST00000357519, ENST00000426652, ENST00000442885, ENST00000525765, ENST00000528937, ENST00000531115, ENST00000532229, ENST00000532679, ENST00000532934, ENST00000533037, ENST00000533045, ENST00000534032
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High
Medium 2437 2914 1653 551 1912 392 4357 2154 3720 414 1459 1613 175 1 1204 2788 5 2
Low 2 77 73 73 39 73 43 14 5 1 1
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NG_047103 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_004214 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_198897 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024448763 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001748030 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_950100 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF010187 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF171944 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF171945 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF171946 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF250391 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF250392 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI925637 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK223438 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK289562 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK293882 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK296571 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK299159 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK309974 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK315976 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AP001201 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AP006287 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC014388 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC017448 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CD109589 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471076 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CR456749 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ388430 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENST00000338369   ⟹   ENSP00000344572
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1165,883,921 - 65,888,531 (-)Ensembl
RefSeq Acc Id: ENST00000357519   ⟹   ENSP00000350124
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1165,883,740 - 65,888,471 (-)Ensembl
RefSeq Acc Id: ENST00000426652
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1165,886,107 - 65,888,461 (-)Ensembl
RefSeq Acc Id: ENST00000442885
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1165,887,330 - 65,888,510 (-)Ensembl
RefSeq Acc Id: ENST00000525765
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1165,883,923 - 65,885,629 (-)Ensembl
RefSeq Acc Id: ENST00000528937
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1165,886,728 - 65,888,513 (-)Ensembl
RefSeq Acc Id: ENST00000531115   ⟹   ENSP00000431457
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1165,883,925 - 65,885,580 (-)Ensembl
RefSeq Acc Id: ENST00000532229   ⟹   ENSP00000433683
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1165,884,935 - 65,888,436 (-)Ensembl
RefSeq Acc Id: ENST00000532679
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1165,885,331 - 65,888,461 (-)Ensembl
RefSeq Acc Id: ENST00000532934
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1165,884,912 - 65,885,710 (-)Ensembl
RefSeq Acc Id: ENST00000533037   ⟹   ENSP00000431414
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1165,884,009 - 65,888,490 (-)Ensembl
RefSeq Acc Id: ENST00000533045   ⟹   ENSP00000434043
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1165,883,948 - 65,888,514 (-)Ensembl
RefSeq Acc Id: ENST00000534032
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1165,883,741 - 65,885,572 (-)Ensembl
RefSeq Acc Id: NM_004214   ⟹   NP_004205
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381165,883,740 - 65,888,471 (-)NCBI
GRCh371165,651,211 - 65,656,010 (-)RGD
Build 361165,407,787 - 65,412,586 (-)NCBI Archive
Celera1162,975,116 - 62,979,917 (-)RGD
HuRef1161,977,728 - 61,982,391 (-)ENTREZGENE
CHM1_11165,535,625 - 65,540,424 (-)NCBI
Sequence:
RefSeq Acc Id: NM_198897   ⟹   NP_942600
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381165,883,740 - 65,888,471 (-)NCBI
GRCh371165,651,211 - 65,656,010 (-)RGD
Build 361165,407,787 - 65,412,586 (-)NCBI Archive
Celera1162,975,116 - 62,979,917 (-)RGD
HuRef1161,977,728 - 61,982,391 (-)ENTREZGENE
CHM1_11165,535,625 - 65,540,424 (-)NCBI
Sequence:
RefSeq Acc Id: XM_024448763   ⟹   XP_024304531
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381165,883,921 - 65,888,461 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001748030
RefSeq Status:
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381165,883,921 - 65,888,510 (-)NCBI
Sequence:
RefSeq Acc Id: XR_950100
RefSeq Status:
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381165,883,921 - 65,888,510 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_942600   ⟸   NM_198897
- Peptide Label: isoform a
- UniProtKB: O43427 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_004205   ⟸   NM_004214
- Peptide Label: isoform b
- UniProtKB: O43427 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_024304531   ⟸   XM_024448763
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSP00000431457   ⟸   ENST00000531115
RefSeq Acc Id: ENSP00000433683   ⟸   ENST00000532229
RefSeq Acc Id: ENSP00000434043   ⟸   ENST00000533045
RefSeq Acc Id: ENSP00000431414   ⟸   ENST00000533037
RefSeq Acc Id: ENSP00000344572   ⟸   ENST00000338369
RefSeq Acc Id: ENSP00000350124   ⟸   ENST00000357519

Promoters
RGD ID:6815935
Promoter ID:HG_SPT:11136
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:K562
Transcripts:AA166967,   AA191454,   AA358157,   AA363385,   AA393854,   AA427881,   AA490046,   AA521391,   AA551845,   AA551846,   AA609670,   AA626903,   AA652437,   AA699777,   AA705493,   AA706227,   AA724583,   AA890298,   AA903396,   AA903516,   AA932834,   AA936340,   AA962204,   AA974405,   AA984898,   AI025562,   AI041021,   AI085407,   AI085501,   AI199020,   AI202002,   AI221887,   AI240488,   AI241751,   AI341784,   AI343628,   AI343818,   AI354416,   AI354430,   AI468294,   AI469042,   AI522045,   AI611037,   AI631516,   AI651319,   AI654353,   AI671861,   AI695193,   AI695990,   AI739253,   AI752196,   AI760749,   AI766130,   AI797406,   AI806779,   AI810243,   AI869482,   AI874108,   AI914969,   AI917787,   AI925637,   AI962355,   AL520139,   AL529776,   AL529797,   AW014976,   AW015738,   AW050727,   AW083636,   AW152490,   AW188761,   AW188846,   AW237060,   AW247293,   AW271703,   AW419324,   AW514690,   AW576068,   AW591986,   AW628963,   AW631149,   AW662496,   AW662880,   AW674559,   AW732117,   AW771389,   AW844109,   BE048328,   BE048750,   BE551786,   BE676709,   BE940272,   BF056453,   BF089322,   BF092986,   BF092999,   BF093020,   BF093033,   BF093094,   BF093116,   BF093212,   BF093213,   BF093237,   BF223141,   BF438045,   BF570299,   BF588556,   BF591404,   BF593373,   BF821544,   BF821642,   BF833917,   BF879553,   BI006725,   BI018683,   BM556029,   BM916911,   BM984926,   BM993131,   BM997620,   BP431062,   BQ018606,   BQ053302,   BQ187867,   BQ308924,   BQ573972,   BQ575159,   BU615711,   BU728926,   BU731818,   BX329594,   BX332613,   BX351011,   BX356621,   BX362870,   BX373852,   BX374178,   BX415352,   CA306013,   CA308548,   CA431296,   CA444261,   CA445141,   CB306355,   CD368070,   CD618185,   CD618188,   CD618189,   CD618191,   CD618194,   CO246415,   DB302150,   DB367681,   H45288,   H51300,   H97524,   N72234,   R11161,   T30888,   T51241,   T51249,   U80964,   W45480,   W45486,   W46818,   W51954,   W60803,   W95170
Position:
Human AssemblyChrPosition (strand)Source
Build 361165,408,726 - 65,409,226 (+)MPROMDB
RGD ID:6788926
Promoter ID:HG_KWN:13369
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   HeLa_S3,   Jurkat,   K562,   Lymphoblastoid,   NB4
Transcripts:NM_004214,   NM_198897,   UC009YQU.1
Position:
Human AssemblyChrPosition (strand)Source
Build 361165,412,501 - 65,413,187 (-)MPROMDB
RGD ID:6853368
Promoter ID:EP74509
Type:initiation region
Name:HS_FIBP
Description:Fibroblast growth factor (acidic) intracellular binding protein.
SO ACC ID:SO:0000170
Source:EPD (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Mammalian gene collection (MGC) full-length cDNA cloning
Position:
Human AssemblyChrPosition (strand)Source
Build 361165,412,522 - 65,412,582EPD
RGD ID:7221079
Promoter ID:EPDNEW_H16286
Type:initiation region
Name:FIBP_1
Description:FGF1 intracellular binding protein
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381165,888,471 - 65,888,531EPDNEW

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 11q13.1(chr11:65881597-65893890)x3 copy number gain See cases [RCV000051909] Chr11:65881597..65893890 [GRCh38]
Chr11:65649068..65661361 [GRCh37]
Chr11:65405644..65417937 [NCBI36]
Chr11:11q13.1
uncertain significance
Single allele deletion Intellectual disability [RCV001293382] Chr11:118359328..118372573 [GRCh37]
Chr11:11p15.3-q23.3
pathogenic
GRCh38/hg38 11q13.1-13.2(chr11:65741431-67705669)x1 copy number loss See cases [RCV000142881] Chr11:65741431..67705669 [GRCh38]
Chr11:65508902..67473140 [GRCh37]
Chr11:65265478..67229716 [NCBI36]
Chr11:11q13.1-13.2
pathogenic
NM_004214.5(FIBP):c.652C>T (p.Gln218Ter) single nucleotide variant Congenital ocular coloboma [RCV000169762]|Thauvin-Robinet-Faivre syndrome [RCV000240847] Chr11:65885181 [GRCh38]
Chr11:65652652 [GRCh37]
Chr11:11q13.1
pathogenic|likely pathogenic|likely benign
FIBP, GLN218TER single nucleotide variant THAUVIN-ROBINET-FAIVRE SYNDROME [RCV000240847] Chr11:11q13.1 pathogenic
NM_004214.5(FIBP):c.175_176insTAA (p.His59delinsLeuAsn) insertion Thauvin-Robinet-Faivre syndrome [RCV000240848] Chr11:65888042..65888043 [GRCh38]
Chr11:65655513..65655514 [GRCh37]
Chr11:11q13.1
pathogenic
NM_004214.5(FIBP):c.490del (p.Leu164fs) deletion not provided [RCV000523729] Chr11:65886344 [GRCh38]
Chr11:65653815 [GRCh37]
Chr11:11q13.1
uncertain significance
NM_004214.5(FIBP):c.86-2A>C single nucleotide variant not provided [RCV000522065] Chr11:65888134 [GRCh38]
Chr11:65655605 [GRCh37]
Chr11:11q13.1
uncertain significance
GRCh37/hg19 11q13.1-13.2(chr11:64501919-67129258)x3 copy number gain See cases [RCV000511632] Chr11:64501919..67129258 [GRCh37]
Chr11:11q13.1-13.2
likely pathogenic
GRCh37/hg19 11p15.5-q25(chr11:230616-134938470) copy number gain See cases [RCV000511729] Chr11:230616..134938470 [GRCh37]
Chr11:11p15.5-q25
pathogenic
GRCh37/hg19 11p15.5-q25(chr11:230616-134938470)x3 copy number gain See cases [RCV000510881] Chr11:230616..134938470 [GRCh37]
Chr11:11p15.5-q25
pathogenic
GRCh37/hg19 11p15.5-q25(chr11:198510-134934063)x3 copy number gain not provided [RCV000737348] Chr11:198510..134934063 [GRCh37]
Chr11:11p15.5-q25
pathogenic
GRCh37/hg19 11p15.5-q25(chr11:70864-134938470)x3 copy number gain not provided [RCV000749874] Chr11:70864..134938470 [GRCh37]
Chr11:11p15.5-q25
pathogenic
NM_004214.5(FIBP):c.645C>T (p.Val215=) single nucleotide variant not provided [RCV000962177] Chr11:65885531 [GRCh38]
Chr11:65653002 [GRCh37]
Chr11:11q13.1
benign
NM_004214.5(FIBP):c.561G>A (p.Gly187=) single nucleotide variant not provided [RCV000879995] Chr11:65885615 [GRCh38]
Chr11:65653086 [GRCh37]
Chr11:11q13.1
likely benign
NM_004214.5(FIBP):c.897C>T (p.Leu299=) single nucleotide variant not provided [RCV000965843] Chr11:65884579 [GRCh38]
Chr11:65652050 [GRCh37]
Chr11:11q13.1
benign
NM_004214.5(FIBP):c.24C>T (p.Phe8=) single nucleotide variant not provided [RCV000981320] Chr11:65888395 [GRCh38]
Chr11:65655866 [GRCh37]
Chr11:11q13.1
likely benign
NM_004214.5(FIBP):c.219G>T (p.Pro73=) single nucleotide variant not provided [RCV000883980] Chr11:65887999 [GRCh38]
Chr11:65655470 [GRCh37]
Chr11:11q13.1
benign|likely benign
NM_004214.5(FIBP):c.21C>T (p.Ile7=) single nucleotide variant not provided [RCV000921839] Chr11:65888398 [GRCh38]
Chr11:65655869 [GRCh37]
Chr11:11q13.1
likely benign
NM_004214.5(FIBP):c.789C>T (p.Gly263=) single nucleotide variant not provided [RCV000904839] Chr11:65884965 [GRCh38]
Chr11:65652436 [GRCh37]
Chr11:11q13.1
likely benign
NM_004214.5(FIBP):c.1030A>G (p.Met344Val) single nucleotide variant not provided [RCV000879655] Chr11:65884018 [GRCh38]
Chr11:65651489 [GRCh37]
Chr11:11q13.1
benign
GRCh37/hg19 11q13.1-13.2(chr11:65138976-67574402) copy number gain not provided [RCV000767601] Chr11:65138976..67574402 [GRCh37]
Chr11:11q13.1-13.2
pathogenic
NM_004214.5(FIBP):c.720A>T (p.Leu240=) single nucleotide variant not provided [RCV000962176] Chr11:65885113 [GRCh38]
Chr11:65652584 [GRCh37]
Chr11:11q13.1
benign
NM_004214.5(FIBP):c.1044C>T (p.Arg348=) single nucleotide variant not provided [RCV000964141] Chr11:65884004 [GRCh38]
Chr11:65651475 [GRCh37]
Chr11:11q13.1
likely benign
NM_004214.5(FIBP):c.1005-10G>A single nucleotide variant not provided [RCV000967764] Chr11:65884053 [GRCh38]
Chr11:65651524 [GRCh37]
Chr11:11q13.1
benign
NM_004214.5(FIBP):c.412-11C>G single nucleotide variant Thauvin-Robinet-Faivre syndrome [RCV000985021] Chr11:65886433 [GRCh38]
Chr11:65653904 [GRCh37]
Chr11:11q13.1
uncertain significance
NC_000011.9:g.(?_65633902)_(66115026_?)dup duplication Autosomal recessive cutis laxa type 1B [RCV000798155] Chr11:65866431..66347555 [GRCh38]
Chr11:65633902..66115026 [GRCh37]
Chr11:11q13.1-13.2
uncertain significance
NM_004214.5(FIBP):c.960C>T (p.Phe320=) single nucleotide variant not provided [RCV000914562] Chr11:65884436 [GRCh38]
Chr11:65651907 [GRCh37]
Chr11:11q13.1
likely benign
NM_004214.5(FIBP):c.150G>C (p.Ala50=) single nucleotide variant not provided [RCV000962178] Chr11:65888068 [GRCh38]
Chr11:65655539 [GRCh37]
Chr11:11q13.1
benign
NM_004214.5(FIBP):c.123C>G (p.Ile41Met) single nucleotide variant not provided [RCV000913920] Chr11:65888095 [GRCh38]
Chr11:65655566 [GRCh37]
Chr11:11q13.1
likely benign
NM_004214.5(FIBP):c.297T>C (p.Phe99=) single nucleotide variant not provided [RCV000935185] Chr11:65887714 [GRCh38]
Chr11:65655185 [GRCh37]
Chr11:11q13.1
likely benign
NM_004214.5(FIBP):c.1004G>C (p.Arg335Pro) single nucleotide variant Thauvin-Robinet-Faivre syndrome [RCV001336154] Chr11:65884392 [GRCh38]
Chr11:65651863 [GRCh37]
Chr11:11q13.1
uncertain significance
NC_000011.9:g.(?_65633902)_(66115026_?)dup duplication Autosomal recessive cutis laxa type 1B [RCV001305354] Chr11:65633902..66115026 [GRCh37]
Chr11:11q13.1-13.2
uncertain significance
NM_004214.5(FIBP):c.668A>G (p.Asp223Gly) single nucleotide variant Thauvin-Robinet-Faivre syndrome [RCV001336155] Chr11:65885165 [GRCh38]
Chr11:65652636 [GRCh37]
Chr11:11q13.1
uncertain significance

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:3705 AgrOrtholog
COSMIC FIBP COSMIC
Ensembl Genes ENSG00000172500 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSP00000344572 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSP00000350124 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSP00000431414 UniProtKB/TrEMBL
  ENSP00000431457 UniProtKB/TrEMBL
  ENSP00000433683 UniProtKB/TrEMBL
  ENSP00000434043 UniProtKB/TrEMBL
Ensembl Transcript ENST00000338369 ENTREZGENE, UniProtKB/Swiss-Prot
  ENST00000357519 ENTREZGENE, UniProtKB/Swiss-Prot
  ENST00000531115 UniProtKB/TrEMBL
  ENST00000532229 UniProtKB/TrEMBL
  ENST00000533037 ENTREZGENE, UniProtKB/TrEMBL
  ENST00000533045 UniProtKB/TrEMBL
GTEx ENSG00000172500 GTEx
HGNC ID HGNC:3705 ENTREZGENE
Human Proteome Map FIBP Human Proteome Map
InterPro FIBP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:9158 UniProtKB/Swiss-Prot
NCBI Gene 9158 ENTREZGENE
OMIM 608296 OMIM
  617107 OMIM
PANTHER PTHR13223 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam FIBP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA28145 PharmGKB
UniProt E9PJW6_HUMAN UniProtKB/TrEMBL
  E9PSD3_HUMAN UniProtKB/TrEMBL
  FIBP_HUMAN UniProtKB/Swiss-Prot
  H0YCE7_HUMAN UniProtKB/TrEMBL
  O43427 ENTREZGENE
UniProt Secondary A8K0J7 UniProtKB/Swiss-Prot
  Q27Q85 UniProtKB/Swiss-Prot
  Q6IBQ3 UniProtKB/Swiss-Prot
  Q9HD65 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-05-03 FIBP  FGF1 intracellular binding protein    fibroblast growth factor (acidic) intracellular binding protein  Symbol and/or name change 5135510 APPROVED
2011-09-01 FIBP  fibroblast growth factor (acidic) intracellular binding protein  FIBP  fibroblast growth factor (acidic) intracellular binding protein  Symbol and/or name change 5135510 APPROVED