OR1F2P (olfactory receptor family 1 subfamily F member 2 pseudogene) - Rat Genome Database

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Gene: OR1F2P (olfactory receptor family 1 subfamily F member 2 pseudogene) Homo sapiens
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Symbol: OR1F2P
Name: olfactory receptor family 1 subfamily F member 2 pseudogene
RGD ID: 1353348
HGNC Page HGNC:8196
Description: Predicted to enable olfactory receptor activity. Predicted to be involved in signal transduction. Predicted to be located in membrane. Predicted to be active in plasma membrane.
Type: pseudo (Ensembl: unprocessed_pseudogene)
RefSeq Status: PROVISIONAL
Previously known as: hg91; OLFMF2; OR16-3; OR1F11; OR1F2; OR1F3P
RGD Orthologs
Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
NCBI Annotation Information: Note: This gene has been defined as a pseudogene by the Human Olfactory Receptor Data Explorer database. The NCBI RefSeq Project therefore treats this as a pseudogene. [08 Feb 2011]
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38163,215,562 - 3,216,546 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl163,215,611 - 3,216,543 (+)EnsemblGRCh38hg38GRCh38
GRCh37163,265,562 - 3,266,546 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36163,205,563 - 3,206,547 (+)NCBINCBI36Build 36hg18NCBI36
Build 34163,205,551 - 3,206,550NCBI
Celera163,471,235 - 3,472,219 (+)NCBICelera
Cytogenetic Map16p13.3NCBI
HuRef163,235,410 - 3,236,394 (+)NCBIHuRef
CHM1_1163,265,510 - 3,266,494 (+)NCBICHM1_1
T2T-CHM13v2.0163,242,672 - 3,243,656 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA)
plasma membrane  (IBA,IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:1370859   PMID:9653642   PMID:12213199   PMID:14983052   PMID:21873635  


Genomics

Comparative Map Data
OR1F2P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38163,215,562 - 3,216,546 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl163,215,611 - 3,216,543 (+)EnsemblGRCh38hg38GRCh38
GRCh37163,265,562 - 3,266,546 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36163,205,563 - 3,206,547 (+)NCBINCBI36Build 36hg18NCBI36
Build 34163,205,551 - 3,206,550NCBI
Celera163,471,235 - 3,472,219 (+)NCBICelera
Cytogenetic Map16p13.3NCBI
HuRef163,235,410 - 3,236,394 (+)NCBIHuRef
CHM1_1163,265,510 - 3,266,494 (+)NCBICHM1_1
T2T-CHM13v2.0163,242,672 - 3,243,656 (+)NCBIT2T-CHM13v2.0
Or1f19
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81012,767,753 - 12,768,694 (+)NCBIGRCr8
mRatBN7.21012,263,109 - 12,264,050 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1012,261,803 - 12,264,965 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1016,952,691 - 16,953,632 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01016,441,501 - 16,442,442 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01011,989,472 - 11,990,413 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01012,602,388 - 12,603,329 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1012,602,388 - 12,603,329 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01012,426,322 - 12,427,263 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41012,479,223 - 12,480,164 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11012,479,222 - 12,480,164 (+)NCBI
Celera1011,988,212 - 11,989,153 (+)NCBICelera
Cytogenetic Map10q12NCBI

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:102
Count of miRNA genes:55
Interacting mature miRNAs:57
Transcripts:ENST00000366390, ENST00000570470
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
UniSTS:487062  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37163,265,641 - 3,266,549UniSTSGRCh37
Celera163,471,314 - 3,472,222UniSTS
HuRef163,235,489 - 3,236,397UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium
Low 7 18 7 52 2 8 428 4 377 18
Below cutoff 307 588 227 89 668 53 645 238 1667 59 239 325 42 163 340 2

Sequence


RefSeq Acc Id: ENST00000570470
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl163,215,611 - 3,216,543 (+)Ensembl
RefSeq Acc Id: NR_002169
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38163,215,562 - 3,216,546 (+)NCBI
GRCh37163,265,562 - 3,266,546 (+)RGD
Build 36163,205,563 - 3,206,547 (+)NCBI Archive
Celera163,471,235 - 3,472,219 (+)RGD
HuRef163,235,410 - 3,236,394 (+)RGD
CHM1_1163,265,510 - 3,266,494 (+)NCBI
T2T-CHM13v2.0163,242,672 - 3,243,656 (+)NCBI
Sequence:
Protein Sequences
GenBank Protein Q96R84 (Get FASTA)   NCBI Sequence Viewer  

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q96R84-F1-model_v2 AlphaFold Q96R84 1-312 view protein structure

Promoters
RGD ID:6793349
Promoter ID:HG_KWN:22876
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell
Transcripts:ENST00000366390
Position:
Human AssemblyChrPosition (strand)Source
Build 36163,205,171 - 3,205,671 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:8196 AgrOrtholog
COSMIC OR1F2P COSMIC
Ensembl Genes ENSG00000203581 Ensembl, ENTREZGENE
Ensembl Transcript ENST00000570470 ENTREZGENE
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/Swiss-Prot
GTEx ENSG00000203581 GTEx
HGNC ID HGNC:8196 ENTREZGENE
Human Proteome Map OR1F2P Human Proteome Map
InterPro GPCR_Rhodpsn UniProtKB/Swiss-Prot
  GPCR_Rhodpsn_7TM UniProtKB/Swiss-Prot
  Olfact_rcpt UniProtKB/Swiss-Prot
NCBI Gene 26184 ENTREZGENE
PANTHER OLFACTORY RECEPTOR UniProtKB/Swiss-Prot
  OLFACTORY RECEPTOR 1F1-RELATED UniProtKB/Swiss-Prot
Pfam 7tm_4 UniProtKB/Swiss-Prot
PharmGKB PA32075 PharmGKB
PRINTS GPCRRHODOPSN UniProtKB/Swiss-Prot
  OLFACTORYR UniProtKB/Swiss-Prot
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/Swiss-Prot
  G_PROTEIN_RECEP_F1_2 UniProtKB/Swiss-Prot
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/Swiss-Prot
UniProt OR1F2_HUMAN UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-12-15 OR1F2P  olfactory receptor family 1 subfamily F member 2 pseudogene  OR1F2P  olfactory receptor, family 1, subfamily F, member 2, pseudogene  Symbol and/or name change 5135510 APPROVED
2015-03-03 OR1F2P  olfactory receptor, family 1, subfamily F, member 2, pseudogene  OR1F2P  olfactory receptor, family 1, subfamily F, member 2  Symbol and/or name change 5135510 APPROVED