CDSN (corneodesmosin) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: CDSN (corneodesmosin) Homo sapiens
Analyze
Symbol: CDSN
Name: corneodesmosin
RGD ID: 1353195
HGNC Page HGNC:1802
Description: Enables protein homodimerization activity. Involved in several processes, including amyloid fibril formation; corneocyte desquamation; and negative regulation of cornification. Acts upstream of or within cell-cell adhesion. Located in cornified envelope and desmosome. Implicated in alopecia; hypotrichosis 2; and peeling skin syndrome 1. Biomarker of atopic dermatitis.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: D6S586E; differentiated keratinocyte S protein; HTSS; HTSS1; HYPT2; PSS; PSS1; S
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38631,115,087 - 31,120,446 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl631,115,087 - 31,120,446 (-)EnsemblGRCh38hg38GRCh38
GRCh37631,082,864 - 31,088,223 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36631,190,849 - 31,196,202 (-)NCBINCBI36Build 36hg18NCBI36
Build 34631,191,339 - 31,196,189NCBI
Celera632,683,083 - 32,688,466 (-)NCBICelera
Cytogenetic Map6p21.33NCBI
HuRef630,885,378 - 30,890,761 (-)NCBIHuRef
CHM1_1631,084,956 - 31,090,339 (-)NCBICHM1_1
T2T-CHM13v2.0630,982,815 - 30,988,170 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Comparative proteomic profiling of patients with atopic dermatitis based on history of eczema herpeticum infection and Staphylococcus aureus colonization. Broccardo CJ, etal., J Allergy Clin Immunol. 2011 Jan;127(1):186-93, 193.e1-11. doi: 10.1016/j.jaci.2010.10.033.
2. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
3. Hypotrichosis simplex of the scalp is associated with nonsense mutations in CDSN encoding corneodesmosin. Levy-Nissenbaum E, etal., Nat Genet. 2003 Jun;34(2):151-3.
4. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. RGD HPO Phenotype Annotation Pipeline RGD automated import pipeline for human HPO-to-gene-to-disease annotations
Additional References at PubMed
PMID:4141628   PMID:7818278   PMID:8415725   PMID:9395522   PMID:9470901   PMID:9712893   PMID:10332047   PMID:10470726   PMID:10599883   PMID:10793007   PMID:10844560   PMID:10888604  
PMID:11169256   PMID:11279026   PMID:11454986   PMID:11556968   PMID:11739386   PMID:12366786   PMID:12472658   PMID:12477932   PMID:12653732   PMID:12807967   PMID:15086560   PMID:15086562  
PMID:15140227   PMID:15333584   PMID:15466487   PMID:15529278   PMID:15654960   PMID:15716318   PMID:15953084   PMID:16297191   PMID:16307662   PMID:16344560   PMID:16642438   PMID:16713569  
PMID:16965413   PMID:18369457   PMID:18460028   PMID:19851445   PMID:20041166   PMID:20139978   PMID:20448140   PMID:20691404   PMID:21134591   PMID:21182673   PMID:21191406   PMID:21221983  
PMID:21307873   PMID:21628128   PMID:21738480   PMID:21777220   PMID:21800051   PMID:21873635   PMID:22033905   PMID:22146835   PMID:22875505   PMID:23263863   PMID:23376485   PMID:23537643  
PMID:23746069   PMID:23955597   PMID:23957618   PMID:24116970   PMID:24210685   PMID:24372652   PMID:24705354   PMID:24794518   PMID:24981860   PMID:25078048   PMID:25416956   PMID:26014679  
PMID:26186194   PMID:27591049   PMID:28425186   PMID:28514442   PMID:28685749   PMID:29117568   PMID:29229926   PMID:29467282   PMID:29589160   PMID:29863498   PMID:30884312   PMID:30948266  
PMID:31010829   PMID:31180492   PMID:31300519   PMID:31324722   PMID:31409639   PMID:31663161   PMID:31746457   PMID:32235678   PMID:32296183   PMID:32687490   PMID:33567341   PMID:33961781  
PMID:34795231   PMID:34825085   PMID:35271311   PMID:35338135   PMID:35864588   PMID:35944360   PMID:36215168   PMID:36244648   PMID:36636478   PMID:36726762   PMID:36898370   PMID:37059927  
PMID:37453912   PMID:37827276   PMID:38113892   PMID:38697112  


Genomics

Comparative Map Data
CDSN
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38631,115,087 - 31,120,446 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl631,115,087 - 31,120,446 (-)EnsemblGRCh38hg38GRCh38
GRCh37631,082,864 - 31,088,223 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36631,190,849 - 31,196,202 (-)NCBINCBI36Build 36hg18NCBI36
Build 34631,191,339 - 31,196,189NCBI
Celera632,683,083 - 32,688,466 (-)NCBICelera
Cytogenetic Map6p21.33NCBI
HuRef630,885,378 - 30,890,761 (-)NCBIHuRef
CHM1_1631,084,956 - 31,090,339 (-)NCBICHM1_1
T2T-CHM13v2.0630,982,815 - 30,988,170 (-)NCBIT2T-CHM13v2.0
Cdsn
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391735,854,044 - 35,867,811 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1735,863,025 - 35,868,077 (+)EnsemblGRCm39 Ensembl
GRCm381735,543,101 - 35,557,180 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1735,552,128 - 35,557,180 (+)EnsemblGRCm38mm10GRCm38
MGSCv371735,689,073 - 35,694,125 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361735,160,194 - 35,165,233 (+)NCBIMGSCv36mm8
Celera1739,067,633 - 39,072,920 (+)NCBICelera
Cytogenetic Map17B1NCBI
cM Map1718.7NCBI
Cdsn
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8203,184,142 - 3,188,962 (-)NCBIGRCr8
mRatBN7.2203,179,432 - 3,184,252 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl203,179,438 - 3,184,250 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx203,240,743 - 3,245,574 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0203,245,714 - 3,250,545 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0203,269,983 - 3,274,788 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0203,704,626 - 3,707,266 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0205,792,983 - 5,795,590 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera20606,557 - 612,794 (-)NCBICelera
Cytogenetic Map20p12NCBI
Cdsn
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955583958,668 - 964,149 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955583959,544 - 968,632 (-)NCBIChiLan1.0ChiLan1.0
CDSN
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2545,676,973 - 45,682,857 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1641,640,163 - 41,646,043 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0630,861,199 - 30,867,082 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1631,726,602 - 31,731,976 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl631,727,090 - 31,731,976 (-)Ensemblpanpan1.1panPan2
CDSN
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.112819,488 - 824,015 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl12820,467 - 823,986 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha12952,855 - 961,585 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.012128,294 - 132,529 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl12127,597 - 132,340 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.112823,625 - 827,971 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.012891,795 - 896,141 (-)NCBIUNSW_CanFamBas_1.0
Cdsn
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494634,421,192 - 34,426,175 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936837787,301 - 791,388 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936837787,035 - 791,388 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CDSN
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl723,520,142 - 23,524,372 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1723,520,142 - 23,524,372 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2727,309,334 - 27,313,556 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CDSN
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11741,352,063 - 41,359,344 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604430,808,711 - 30,814,631 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cdsn
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475424,796,341 - 24,799,913 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475424,796,308 - 24,800,324 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in CDSN
110 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
NM_001264.5(CDSN):c.175A>T (p.Lys59Ter) single nucleotide variant Peeling skin syndrome 1 [RCV000023198]|not provided [RCV001725933] Chr6:31117440 [GRCh38]
Chr6:31085217 [GRCh37]
Chr6:6p21.33
pathogenic
NM_001264.5(CDSN):c.643C>T (p.Gln215Ter) single nucleotide variant Hypotrichosis 2 [RCV000007412] Chr6:31116972 [GRCh38]
Chr6:31084749 [GRCh37]
Chr6:6p21.33
pathogenic
NM_001264.5(CDSN):c.598C>T (p.Gln200Ter) single nucleotide variant Hypotrichosis 2 [RCV000007413] Chr6:31117017 [GRCh38]
Chr6:31084794 [GRCh37]
Chr6:6p21.33
pathogenic
NM_001264.5(CDSN):c.746del (p.Gly249fs) deletion Peeling skin syndrome 1 [RCV000144907] Chr6:31116869 [GRCh38]
Chr6:31084646 [GRCh37]
Chr6:6p21.33
pathogenic|not provided
NM_001264.5(CDSN):c.424G>T (p.Gly142Ter) single nucleotide variant Peeling skin syndrome 1 [RCV000144909] Chr6:31117191 [GRCh38]
Chr6:31084968 [GRCh37]
Chr6:6p21.33
pathogenic|not provided
NM_001264.5(CDSN):c.164_167dup (p.Thr57fs) duplication Peeling skin syndrome 1 [RCV000144908]|not provided [RCV003556182] Chr6:31117447..31117448 [GRCh38]
Chr6:31085224..31085225 [GRCh37]
Chr6:6p21.33
pathogenic|uncertain significance
GRCh38/hg38 6p25.3-12.3(chr6:156974-46789291)x3 copy number gain See cases [RCV000143497] Chr6:156974..46789291 [GRCh38]
Chr6:156974..46757028 [GRCh37]
Chr6:101974..46864987 [NCBI36]
Chr6:6p25.3-12.3
pathogenic
Single allele complex Breast ductal adenocarcinoma [RCV000207259] Chr6:31085200..31324647 [GRCh37]
Chr6:6p21.33
uncertain significance
NM_001264.5(CDSN):c.1174T>C (p.Ser392Pro) single nucleotide variant not provided [RCV000522840] Chr6:31116441 [GRCh38]
Chr6:31084218 [GRCh37]
Chr6:6p21.33
uncertain significance
NM_001264.5(CDSN):c.1447G>A (p.Ala483Thr) single nucleotide variant CDSN-related disorder [RCV003912777]|not provided [RCV000948308]|not specified [RCV000443081] Chr6:31116168 [GRCh38]
Chr6:31083945 [GRCh37]
Chr6:6p21.33
benign|likely benign
GRCh37/hg19 6p25.3-q27(chr6:156975-170919482)x3 copy number gain See cases [RCV000512067] Chr6:156975..170919482 [GRCh37]
Chr6:6p25.3-q27
pathogenic
GRCh37/hg19 6p25.3-q27(chr6:156975-170919482) copy number gain See cases [RCV000510595] Chr6:156975..170919482 [GRCh37]
Chr6:6p25.3-q27
pathogenic
NM_001264.5(CDSN):c.1579A>G (p.Asn527Asp) single nucleotide variant Peeling skin syndrome 1 [RCV001579288]|not provided [RCV001647447] Chr6:31116036 [GRCh38]
Chr6:31083813 [GRCh37]
Chr6:6p21.33
benign
GRCh37/hg19 6p25.3-q27(chr6:108666-170980171)x3 copy number gain not provided [RCV000745403] Chr6:108666..170980171 [GRCh37]
Chr6:6p25.3-q27
pathogenic
GRCh37/hg19 6p25.3-q27(chr6:60107-171054786)x3 copy number gain not provided [RCV000745400] Chr6:60107..171054786 [GRCh37]
Chr6:6p25.3-q27
pathogenic
GRCh37/hg19 6p25.3-q27(chr6:165632-170919470)x3 copy number gain not provided [RCV000745404] Chr6:165632..170919470 [GRCh37]
Chr6:6p25.3-q27
pathogenic
GRCh37/hg19 6p22.1-21.32(chr6:28130359-32108367)x3 copy number gain not provided [RCV000745592] Chr6:28130359..32108367 [GRCh37]
Chr6:6p22.1-21.32
uncertain significance
NM_001264.5(CDSN):c.1317C>G (p.Ser439=) single nucleotide variant not provided [RCV001667258] Chr6:31116298 [GRCh38]
Chr6:31084075 [GRCh37]
Chr6:6p21.33
benign
NM_001264.5(CDSN):c.86-50G>A single nucleotide variant not provided [RCV001691625] Chr6:31117579 [GRCh38]
Chr6:31085356 [GRCh37]
Chr6:6p21.33
benign
NC_000006.12:g.31120455A>G single nucleotide variant not provided [RCV001681949] Chr6:31120455 [GRCh38]
Chr6:31120455..31120456 [GRCh38]
Chr6:31088232 [GRCh37]
Chr6:31088232..31088233 [GRCh37]
Chr6:6p21.33
benign
NM_001264.5(CDSN):c.86-257C>T single nucleotide variant not provided [RCV001679147] Chr6:31117786 [GRCh38]
Chr6:31085563 [GRCh37]
Chr6:6p21.33
benign
NM_001264.5(CDSN):c.52A>T (p.Met18Leu) single nucleotide variant not provided [RCV001648848] Chr6:31120368 [GRCh38]
Chr6:31088145 [GRCh37]
Chr6:6p21.33
benign
NM_001264.5(CDSN):c.903C>T (p.Gly301=) single nucleotide variant not provided [RCV000902737] Chr6:31116712 [GRCh38]
Chr6:31084489 [GRCh37]
Chr6:6p21.33
likely benign
NM_001264.5(CDSN):c.1059C>T (p.Ser353=) single nucleotide variant CDSN-related disorder [RCV004754664]|not provided [RCV000973565] Chr6:31116556 [GRCh38]
Chr6:31084333 [GRCh37]
Chr6:6p21.33
benign
NM_001264.5(CDSN):c.1413C>T (p.Pro471=) single nucleotide variant CDSN-related disorder [RCV003975697]|not provided [RCV000898067] Chr6:31116202 [GRCh38]
Chr6:31083979 [GRCh37]
Chr6:6p21.33
benign|likely benign
NM_001264.5(CDSN):c.428= (p.Asn143=) variation not provided [RCV000949287] Chr6:31117187 [GRCh38]
Chr6:31084964 [GRCh37]
Chr6:6p21.33
benign
NM_001264.5(CDSN):c.192= (p.Gly64=) variation not provided [RCV000949288] Chr6:31117423 [GRCh38]
Chr6:31085200 [GRCh37]
Chr6:6p21.33
benign
NM_001264.5(CDSN):c.123= (p.Pro41=) variation not provided [RCV000949289] Chr6:31117492 [GRCh38]
Chr6:31085269 [GRCh37]
Chr6:6p21.33
benign
NM_001264.5(CDSN):c.456C>G (p.Ser152Arg) single nucleotide variant not provided [RCV000907188] Chr6:31117159 [GRCh38]
Chr6:31084936 [GRCh37]
Chr6:6p21.33
benign
NM_001264.5(CDSN):c.1148G>A (p.Gly383Asp) single nucleotide variant CDSN-related disorder [RCV003903043]|not provided [RCV000924587] Chr6:31116467 [GRCh38]
Chr6:31084244 [GRCh37]
Chr6:6p21.33
benign|likely benign
NM_001264.5(CDSN):c.1302C>A (p.Ser434Arg) single nucleotide variant CDSN-related disorder [RCV004754660]|not provided [RCV000971361] Chr6:31116313 [GRCh38]
Chr6:31084090 [GRCh37]
Chr6:6p21.33
benign|likely benign
NM_001264.5(CDSN):c.1233C>T (p.Pro411=) single nucleotide variant not provided [RCV000887787] Chr6:31116382 [GRCh38]
Chr6:31084159 [GRCh37]
Chr6:6p21.33
likely benign
GRCh37/hg19 6p22.1-q14.1(chr6:29455465-81447367) copy number gain not provided [RCV000767714] Chr6:29455465..81447367 [GRCh37]
Chr6:6p22.1-q14.1
pathogenic
NM_001264.5(CDSN):c.1490G>A (p.Arg497His) single nucleotide variant not specified [RCV000784944] Chr6:31116125 [GRCh38]
Chr6:31083902 [GRCh37]
Chr6:6p21.33
uncertain significance
NM_001264.5(CDSN):c.528G>A (p.Leu176=) single nucleotide variant not provided [RCV000975971] Chr6:31117087 [GRCh38]
Chr6:31084864 [GRCh37]
Chr6:6p21.33
likely benign
NM_001264.5(CDSN):c.1459G>A (p.Gly487Ser) single nucleotide variant Peeling skin syndrome 1 [RCV000987665] Chr6:31116156 [GRCh38]
Chr6:31083933 [GRCh37]
Chr6:6p21.33
likely pathogenic
NM_001264.5(CDSN):c.1358G>A (p.Ser453Asn) single nucleotide variant CDSN-related disorder [RCV003906121]|Peeling skin syndrome 1 [RCV000987666]|not provided [RCV001655657] Chr6:31116257 [GRCh38]
Chr6:31084034 [GRCh37]
Chr6:6p21.33
benign
GRCh37/hg19 6p21.33-21.31(chr6:31036397-34088832)x3 copy number gain not provided [RCV001005791] Chr6:31036397..34088832 [GRCh37]
Chr6:6p21.33-21.31
likely pathogenic
NM_001264.5(CDSN):c.*138C>T single nucleotide variant not provided [RCV001608989] Chr6:31115887 [GRCh38]
Chr6:31083664 [GRCh37]
Chr6:6p21.33
benign
NC_000006.11:g.(?_30695893)_(31937492_?)dup duplication not provided [RCV003107453] Chr6:30695893..31937492 [GRCh37]
Chr6:6p21.33
uncertain significance
NM_001264.5(CDSN):c.1310C>T (p.Ser437Phe) single nucleotide variant Inborn genetic diseases [RCV003240923] Chr6:31116305 [GRCh38]
Chr6:31084082 [GRCh37]
Chr6:6p21.33
uncertain significance
NM_001264.5(CDSN):c.605T>C (p.Phe202Ser) single nucleotide variant not provided [RCV001610244] Chr6:31117010 [GRCh38]
Chr6:31084787 [GRCh37]
Chr6:6p21.33
benign
NM_001264.5(CDSN):c.85+178C>T single nucleotide variant not provided [RCV001678552] Chr6:31120157 [GRCh38]
Chr6:31087934 [GRCh37]
Chr6:6p21.33
benign
NM_001264.5(CDSN):c.86-76G>T single nucleotide variant not provided [RCV001637804] Chr6:31117605 [GRCh38]
Chr6:31085382 [GRCh37]
Chr6:6p21.33
benign
NM_001264.5(CDSN):c.85+36C>T single nucleotide variant not provided [RCV001687331] Chr6:31120299 [GRCh38]
Chr6:31088076 [GRCh37]
Chr6:6p21.33
benign
NM_001264.5(CDSN):c.1222T>G (p.Ser408Ala) single nucleotide variant not provided [RCV001639503] Chr6:31116393 [GRCh38]
Chr6:31084170 [GRCh37]
Chr6:6p21.33
benign
NM_001264.5(CDSN):c.1226G>T (p.Gly409Val) single nucleotide variant CDSN-related disorder [RCV003980808]|not provided [RCV001620579] Chr6:31116389 [GRCh38]
Chr6:31084166 [GRCh37]
Chr6:6p21.33
benign
NM_001264.5(CDSN):c.256G>A (p.Gly86Ser) single nucleotide variant CDSN-related disorder [RCV004754603]|not provided [RCV000883203] Chr6:31117359 [GRCh38]
Chr6:31085136 [GRCh37]
Chr6:6p21.33
benign
NM_001264.5(CDSN):c.451A>T (p.Ser151Cys) single nucleotide variant not provided [RCV000907189] Chr6:31117164 [GRCh38]
Chr6:31084941 [GRCh37]
Chr6:6p21.33
benign
NM_001264.5(CDSN):c.678C>T (p.Pro226=) single nucleotide variant not provided [RCV000963328] Chr6:31116937 [GRCh38]
Chr6:31084714 [GRCh37]
Chr6:6p21.33
likely benign
NM_001264.5(CDSN):c.1525C>T (p.Leu509=) single nucleotide variant Hypotrichosis 2 [RCV002495375]|not provided [RCV000888568] Chr6:31116090 [GRCh38]
Chr6:31083867 [GRCh37]
Chr6:6p21.33
benign|likely benign
NM_001264.5(CDSN):c.536A>G (p.Asn179Ser) single nucleotide variant CDSN-related disorder [RCV003930753]|not provided [RCV000889576] Chr6:31117079 [GRCh38]
Chr6:31084856 [GRCh37]
Chr6:6p21.33
likely benign
NM_001264.5(CDSN):c.*146C>T single nucleotide variant not provided [RCV001676269] Chr6:31115879 [GRCh38]
Chr6:31083656 [GRCh37]
Chr6:6p21.33
benign
NM_001264.5(CDSN):c.86-34C>T single nucleotide variant not provided [RCV001689167] Chr6:31117563 [GRCh38]
Chr6:31085340 [GRCh37]
Chr6:6p21.33
benign
NM_001264.5(CDSN):c.1344T>C (p.Cys448=) single nucleotide variant not provided [RCV001688883] Chr6:31116271 [GRCh38]
Chr6:31084048 [GRCh37]
Chr6:6p21.33
benign
NM_001264.5(CDSN):c.1317C>A (p.Ser439=) single nucleotide variant not provided [RCV001673120]|not specified [RCV001529313] Chr6:31116298 [GRCh38]
Chr6:31084075 [GRCh37]
Chr6:6p21.33
benign
NM_001264.5(CDSN):c.753G>A (p.Arg251=) single nucleotide variant not provided [RCV001639548] Chr6:31116862 [GRCh38]
Chr6:31084639 [GRCh37]
Chr6:6p21.33
benign
NC_000006.12:g.31120548A>G single nucleotide variant not provided [RCV001673316] Chr6:31120548 [GRCh38]
Chr6:31088325 [GRCh37]
Chr6:6p21.33
benign
NM_001264.5(CDSN):c.*73T>G single nucleotide variant not provided [RCV001614660] Chr6:31115952 [GRCh38]
Chr6:31083729 [GRCh37]
Chr6:6p21.33
benign
NM_001264.5(CDSN):c.85+204A>C single nucleotide variant not provided [RCV001690918] Chr6:31120131 [GRCh38]
Chr6:31087908 [GRCh37]
Chr6:6p21.33
benign
NM_001264.5(CDSN):c.85+75A>G single nucleotide variant not provided [RCV001671310] Chr6:31120260 [GRCh38]
Chr6:31088037 [GRCh37]
Chr6:6p21.33
benign
NC_000006.12:g.31120464C>T single nucleotide variant not provided [RCV001612273] Chr6:31120464 [GRCh38]
Chr6:31088241 [GRCh37]
Chr6:6p21.33
benign
NM_001264.5(CDSN):c.-6T>C single nucleotide variant not provided [RCV001709892] Chr6:31120425 [GRCh38]
Chr6:31088202 [GRCh37]
Chr6:6p21.33
benign
NM_001264.5(CDSN):c.708C>T (p.Ser236=) single nucleotide variant not provided [RCV001682443] Chr6:31116907 [GRCh38]
Chr6:31084684 [GRCh37]
Chr6:6p21.33
benign
NM_001264.5(CDSN):c.1340C>T (p.Pro447Leu) single nucleotide variant Hypotrichosis 2 [RCV001328740]|Inborn genetic diseases [RCV004035654]|not provided [RCV003546700] Chr6:31116275 [GRCh38]
Chr6:31084052 [GRCh37]
Chr6:6p21.33
uncertain significance
NM_001264.5(CDSN):c.275C>T (p.Ser92Phe) single nucleotide variant Inborn genetic diseases [RCV003365356]|not provided [RCV001356775] Chr6:31117340 [GRCh38]
Chr6:31085117 [GRCh37]
Chr6:6p21.33
uncertain significance
NM_001264.5(CDSN):c.870C>A (p.Asp290Glu) single nucleotide variant Inborn genetic diseases [RCV002547636]|not provided [RCV001356523] Chr6:31116745 [GRCh38]
Chr6:31084522 [GRCh37]
Chr6:6p21.33
uncertain significance
NM_001264.5(CDSN):c.239G>A (p.Ser80Asn) single nucleotide variant Peeling skin syndrome 1 [RCV001542418] Chr6:31117376 [GRCh38]
Chr6:31085153 [GRCh37]
Chr6:6p21.33
uncertain significance
NC_000006.12:g.31120802A>G single nucleotide variant not provided [RCV001651848] Chr6:31120802 [GRCh38]
Chr6:31088579 [GRCh37]
Chr6:6p21.33
benign
NM_001264.5(CDSN):c.86-241C>G single nucleotide variant not provided [RCV001673588] Chr6:31117770 [GRCh38]
Chr6:31085547 [GRCh37]
Chr6:6p21.33
benign
NM_001264.5(CDSN):c.1567G>A (p.Gly523Arg) single nucleotide variant not provided [RCV001760614] Chr6:31116048 [GRCh38]
Chr6:31083825 [GRCh37]
Chr6:6p21.33
uncertain significance
NM_001264.5(CDSN):c.1589AAG[1] (p.Ter530=) microsatellite not provided [RCV001762854] Chr6:31116021..31116023 [GRCh38]
Chr6:31083798..31083800 [GRCh37]
Chr6:6p21.33
benign
NC_000006.11:g.28005012_31683185del deletion Megacolon [RCV001290055] Chr6:28005012..31683185 [GRCh37]
Chr6:6p22.1-21.33
likely pathogenic
NM_001264.5(CDSN):c.166C>T (p.Leu56Phe) single nucleotide variant not provided [RCV001777040] Chr6:31117449 [GRCh38]
Chr6:31085226 [GRCh37]
Chr6:6p21.33
benign|likely benign
NM_001264.5(CDSN):c.388G>C (p.Gly130Arg) single nucleotide variant not provided [RCV001983354] Chr6:31117227 [GRCh38]
Chr6:31085004 [GRCh37]
Chr6:6p21.33
uncertain significance
NM_001264.5(CDSN):c.1444G>A (p.Gly482Ser) single nucleotide variant not provided [RCV001908270] Chr6:31116171 [GRCh38]
Chr6:31083948 [GRCh37]
Chr6:6p21.33
uncertain significance
NM_001264.5(CDSN):c.368C>G (p.Ser123Cys) single nucleotide variant not provided [RCV002043529] Chr6:31117247 [GRCh38]
Chr6:31085024 [GRCh37]
Chr6:6p21.33
uncertain significance
NM_001264.5(CDSN):c.475A>G (p.Ser159Gly) single nucleotide variant Inborn genetic diseases [RCV004612093]|not provided [RCV002010392] Chr6:31117140 [GRCh38]
Chr6:31084917 [GRCh37]
Chr6:6p21.33
uncertain significance
NM_001264.5(CDSN):c.1201A>G (p.Ser401Gly) single nucleotide variant not provided [RCV002210012] Chr6:31116414 [GRCh38]
Chr6:31084191 [GRCh37]
Chr6:6p21.33
benign
NM_001264.5(CDSN):c.600G>A (p.Gln200=) single nucleotide variant not provided [RCV002129616] Chr6:31117015 [GRCh38]
Chr6:31084792 [GRCh37]
Chr6:6p21.33
benign
NM_001264.5(CDSN):c.123T>C (p.Pro41=) single nucleotide variant not provided [RCV002115955] Chr6:31117492 [GRCh38]
Chr6:31085269 [GRCh37]
Chr6:6p21.33
benign
NM_001264.5(CDSN):c.428A>G (p.Asn143Ser) single nucleotide variant not provided [RCV002172694] Chr6:31117187 [GRCh38]
Chr6:31084964 [GRCh37]
Chr6:6p21.33
benign
NM_001264.5(CDSN):c.192T>C (p.Gly64=) single nucleotide variant not provided [RCV002219989] Chr6:31117423 [GRCh38]
Chr6:31085200 [GRCh37]
Chr6:6p21.33
benign
NM_001264.5(CDSN):c.1229T>C (p.Leu410Ser) single nucleotide variant not provided [RCV002117991] Chr6:31116386 [GRCh38]
Chr6:31084163 [GRCh37]
Chr6:6p21.33
benign
NM_001264.5(CDSN):c.447_449del (p.Ser153del) deletion not provided [RCV002201943] Chr6:31117166..31117168 [GRCh38]
Chr6:31084943..31084945 [GRCh37]
Chr6:6p21.33
benign
NM_001264.5(CDSN):c.1104A>G (p.Ala368=) single nucleotide variant not provided [RCV002136801] Chr6:31116511 [GRCh38]
Chr6:31084288 [GRCh37]
Chr6:6p21.33
benign
NM_001264.5(CDSN):c.957C>T (p.Tyr319=) single nucleotide variant not provided [RCV002138460] Chr6:31116658 [GRCh38]
Chr6:31084435 [GRCh37]
Chr6:6p21.33
benign
NM_001264.5(CDSN):c.1526T>C (p.Leu509Pro) single nucleotide variant CDSN-related disorder [RCV003978542]|not provided [RCV002184664] Chr6:31116089 [GRCh38]
Chr6:31083866 [GRCh37]
Chr6:6p21.33
likely benign
NC_000006.11:g.(?_30695893)_(36953949_?)dup duplication Proteasome-associated autoinflammatory syndrome 1 [RCV003113679] Chr6:30695893..36953949 [GRCh37]
Chr6:6p21.33-21.2
uncertain significance
NM_001264.5(CDSN):c.484C>T (p.Gln162Ter) single nucleotide variant Peeling skin syndrome 1 [RCV003152833] Chr6:31117131 [GRCh38]
Chr6:31084908 [GRCh37]
Chr6:6p21.33
likely pathogenic
Single allele deletion Peeling skin syndrome 1 [RCV003156207] Chr6:31111325..31129674 [GRCh38]
Chr6:6p21.33
pathogenic
NM_001264.5(CDSN):c.1364del (p.Ser455fs) deletion not provided [RCV002754920] Chr6:31116251 [GRCh38]
Chr6:31084028 [GRCh37]
Chr6:6p21.33
uncertain significance
NM_001264.5(CDSN):c.106G>A (p.Gly36Ser) single nucleotide variant not provided [RCV002902926] Chr6:31117509 [GRCh38]
Chr6:31085286 [GRCh37]
Chr6:6p21.33
benign
NM_001264.5(CDSN):c.702G>A (p.Ser234=) single nucleotide variant not provided [RCV003075886] Chr6:31116913 [GRCh38]
Chr6:31084690 [GRCh37]
Chr6:6p21.33
likely benign
NM_001264.5(CDSN):c.669C>T (p.Pro223=) single nucleotide variant CDSN-related disorder [RCV003926529]|not provided [RCV002904717] Chr6:31116946 [GRCh38]
Chr6:31084723 [GRCh37]
Chr6:6p21.33
benign
NM_001264.5(CDSN):c.1580del (p.Asn527fs) deletion not provided [RCV002731512] Chr6:31116035 [GRCh38]
Chr6:31083812 [GRCh37]
Chr6:6p21.33
uncertain significance
NM_001264.5(CDSN):c.477C>T (p.Ser159=) single nucleotide variant not provided [RCV002863063] Chr6:31117138 [GRCh38]
Chr6:31084915 [GRCh37]
Chr6:6p21.33
likely benign
NM_001264.5(CDSN):c.1498C>T (p.Arg500Trp) single nucleotide variant not provided [RCV002775162] Chr6:31116117 [GRCh38]
Chr6:31083894 [GRCh37]
Chr6:6p21.33
uncertain significance
NM_001264.5(CDSN):c.1532C>T (p.Pro511Leu) single nucleotide variant not provided [RCV002616811] Chr6:31116083 [GRCh38]
Chr6:31083860 [GRCh37]
Chr6:6p21.33
uncertain significance
NM_001264.5(CDSN):c.1441G>T (p.Ala481Ser) single nucleotide variant not provided [RCV002617372] Chr6:31116174 [GRCh38]
Chr6:31083951 [GRCh37]
Chr6:6p21.33
uncertain significance
NM_001264.5(CDSN):c.787G>C (p.Gly263Arg) single nucleotide variant Inborn genetic diseases [RCV002888809] Chr6:31116828 [GRCh38]
Chr6:31084605 [GRCh37]
Chr6:6p21.33
uncertain significance
NM_001264.5(CDSN):c.454A>G (p.Ser152Gly) single nucleotide variant not provided [RCV002948860] Chr6:31117161 [GRCh38]
Chr6:31084938 [GRCh37]
Chr6:6p21.33
uncertain significance
NM_001264.5(CDSN):c.449G>A (p.Ser150Asn) single nucleotide variant Inborn genetic diseases [RCV002987497] Chr6:31117166 [GRCh38]
Chr6:31084943 [GRCh37]
Chr6:6p21.33
uncertain significance
NM_001264.5(CDSN):c.1441G>A (p.Ala481Thr) single nucleotide variant CDSN-related disorder [RCV004754957]|Inborn genetic diseases [RCV002709866] Chr6:31116174 [GRCh38]
Chr6:31083951 [GRCh37]
Chr6:6p21.33
uncertain significance
NM_001264.5(CDSN):c.1286G>T (p.Gly429Val) single nucleotide variant Inborn genetic diseases [RCV002850319] Chr6:31116329 [GRCh38]
Chr6:31084106 [GRCh37]
Chr6:6p21.33
uncertain significance
NM_001264.5(CDSN):c.575C>T (p.Pro192Leu) single nucleotide variant not provided [RCV002954311] Chr6:31117040 [GRCh38]
Chr6:31084817 [GRCh37]
Chr6:6p21.33
likely benign
NM_001264.5(CDSN):c.550C>T (p.Arg184Cys) single nucleotide variant Inborn genetic diseases [RCV002850467] Chr6:31117065 [GRCh38]
Chr6:31084842 [GRCh37]
Chr6:6p21.33
uncertain significance
NM_001264.5(CDSN):c.9G>A (p.Ser3=) single nucleotide variant CDSN-related disorder [RCV003943653]|not provided [RCV002966775] Chr6:31120411 [GRCh38]
Chr6:31088188 [GRCh37]
Chr6:6p21.33
likely benign
NM_001264.5(CDSN):c.32G>A (p.Arg11His) single nucleotide variant not provided [RCV002941942] Chr6:31120388 [GRCh38]
Chr6:31088165 [GRCh37]
Chr6:6p21.33
benign
NM_001264.5(CDSN):c.103A>C (p.Ile35Leu) single nucleotide variant not provided [RCV002576864] Chr6:31117512 [GRCh38]
Chr6:31085289 [GRCh37]
Chr6:6p21.33
uncertain significance
NM_001264.5(CDSN):c.765G>A (p.Val255=) single nucleotide variant CDSN-related disorder [RCV003953882]|not provided [RCV003088254] Chr6:31116850 [GRCh38]
Chr6:31084627 [GRCh37]
Chr6:6p21.33
likely benign
NM_001264.5(CDSN):c.1200C>T (p.Ser400=) single nucleotide variant not provided [RCV002675674] Chr6:31116415 [GRCh38]
Chr6:31084192 [GRCh37]
Chr6:6p21.33
likely benign
NM_001264.5(CDSN):c.676C>T (p.Pro226Ser) single nucleotide variant CDSN-related disorder [RCV004754953]|Inborn genetic diseases [RCV002989459] Chr6:31116939 [GRCh38]
Chr6:31084716 [GRCh37]
Chr6:6p21.33
uncertain significance
NM_001264.5(CDSN):c.25A>T (p.Met9Leu) single nucleotide variant Inborn genetic diseases [RCV002677543] Chr6:31120395 [GRCh38]
Chr6:31088172 [GRCh37]
Chr6:6p21.33
uncertain significance
NM_001264.5(CDSN):c.1516G>A (p.Val506Met) single nucleotide variant Inborn genetic diseases [RCV004068125]|not provided [RCV002943918] Chr6:31116099 [GRCh38]
Chr6:31083876 [GRCh37]
Chr6:6p21.33
uncertain significance
NM_001264.5(CDSN):c.1412C>T (p.Pro471Leu) single nucleotide variant Inborn genetic diseases [RCV003179962]|not provided [RCV003720783] Chr6:31116203 [GRCh38]
Chr6:31083980 [GRCh37]
Chr6:6p21.33
uncertain significance
NM_001264.5(CDSN):c.1320T>A (p.Ser440Arg) single nucleotide variant Inborn genetic diseases [RCV003195830] Chr6:31116295 [GRCh38]
Chr6:31084072 [GRCh37]
Chr6:6p21.33
uncertain significance
NM_001264.5(CDSN):c.643C>A (p.Gln215Lys) single nucleotide variant Inborn genetic diseases [RCV003174400] Chr6:31116972 [GRCh38]
Chr6:31084749 [GRCh37]
Chr6:6p21.33
uncertain significance
NM_001264.5(CDSN):c.821G>A (p.Ser274Asn) single nucleotide variant Inborn genetic diseases [RCV003368703] Chr6:31116794 [GRCh38]
Chr6:31084571 [GRCh37]
Chr6:6p21.33
uncertain significance
NM_001264.5(CDSN):c.857T>C (p.Ile286Thr) single nucleotide variant not provided [RCV003442678] Chr6:31116758 [GRCh38]
Chr6:31084535 [GRCh37]
Chr6:6p21.33
uncertain significance
NM_001264.5(CDSN):c.583del (p.Ser195fs) deletion CDSN-related disorder [RCV003406192] Chr6:31117032 [GRCh38]
Chr6:31084809 [GRCh37]
Chr6:6p21.33
likely pathogenic
NM_001264.5(CDSN):c.1515A>G (p.Gln505=) single nucleotide variant not provided [RCV003573370] Chr6:31116100 [GRCh38]
Chr6:31083877 [GRCh37]
Chr6:6p21.33
likely benign
NM_001264.5(CDSN):c.1004G>C (p.Gly335Ala) single nucleotide variant not provided [RCV003576236] Chr6:31116611 [GRCh38]
Chr6:31084388 [GRCh37]
Chr6:6p21.33
uncertain significance
NM_001264.5(CDSN):c.191_192delinsCC (p.Gly64Ala) indel not provided [RCV003830941] Chr6:31117423..31117424 [GRCh38]
Chr6:31085200..31085201 [GRCh37]
Chr6:6p21.33
uncertain significance
NM_001264.5(CDSN):c.941G>C (p.Ser314Thr) single nucleotide variant not provided [RCV003576555] Chr6:31116674 [GRCh38]
Chr6:31084451 [GRCh37]
Chr6:6p21.33
uncertain significance
NM_001264.5(CDSN):c.379G>A (p.Gly127Ser) single nucleotide variant not provided [RCV003662308] Chr6:31117236 [GRCh38]
Chr6:31085013 [GRCh37]
Chr6:6p21.33
uncertain significance
NM_001264.5(CDSN):c.86-17A>G single nucleotide variant not provided [RCV003835478] Chr6:31117546 [GRCh38]
Chr6:31085323 [GRCh37]
Chr6:6p21.33
likely benign
NM_001264.5(CDSN):c.844C>A (p.Pro282Thr) single nucleotide variant not provided [RCV003726476] Chr6:31116771 [GRCh38]
Chr6:31084548 [GRCh37]
Chr6:6p21.33
uncertain significance
NM_001264.5(CDSN):c.85+17C>T single nucleotide variant not provided [RCV003818386] Chr6:31120318 [GRCh38]
Chr6:31088095 [GRCh37]
Chr6:6p21.33
likely benign
NM_001264.5(CDSN):c.709G>A (p.Gly237Ser) single nucleotide variant Inborn genetic diseases [RCV004431074] Chr6:31116906 [GRCh38]
Chr6:31084683 [GRCh37]
Chr6:6p21.33
uncertain significance
NM_001264.5(CDSN):c.1094C>T (p.Ser365Leu) single nucleotide variant Inborn genetic diseases [RCV004431073] Chr6:31116521 [GRCh38]
Chr6:31084298 [GRCh37]
Chr6:6p21.33
uncertain significance
NM_001264.5(CDSN):c.937T>A (p.Tyr313Asn) single nucleotide variant Inborn genetic diseases [RCV004431075] Chr6:31116678 [GRCh38]
Chr6:31084455 [GRCh37]
Chr6:6p21.33
uncertain significance
NM_001264.5(CDSN):c.635G>A (p.Ser212Asn) single nucleotide variant Inborn genetic diseases [RCV004612401] Chr6:31116980 [GRCh38]
Chr6:31084757 [GRCh37]
Chr6:6p21.33
likely benign
NM_001264.5(CDSN):c.1522C>A (p.Pro508Thr) single nucleotide variant Inborn genetic diseases [RCV004612399] Chr6:31116093 [GRCh38]
Chr6:31083870 [GRCh37]
Chr6:6p21.33
uncertain significance
NM_001264.5(CDSN):c.746G>A (p.Gly249Asp) single nucleotide variant Inborn genetic diseases [RCV004612400] Chr6:31116869 [GRCh38]
Chr6:31084646 [GRCh37]
Chr6:6p21.33
uncertain significance
NM_001264.5(CDSN):c.1268G>C (p.Cys423Ser) single nucleotide variant CDSN-related disorder [RCV004755219] Chr6:31116347 [GRCh38]
Chr6:31084124 [GRCh37]
Chr6:6p21.33
uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:530
Count of miRNA genes:406
Interacting mature miRNAs:426
Transcripts:ENST00000376288
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407156646GWAS805622_Hstreptococcus seropositivity QTL GWAS805622 (human)3e-12streptococcus seropositivity63111757931117580Human
1358839MULTSCL5_HMultiple sclerosis susceptibility QTL 5 (human)Multiple sclerosis susceptibility61958431145584311Human
407157379GWAS806355_Hstreptococcus seropositivity QTL GWAS806355 (human)2e-12streptococcus seropositivity63111757931117580Human
1643377BW325_HBody weight QTL 325 (human)2.320.0005Body fat amount6691196032911960Human
1643569GLUCO21_HGlucose level QTL 21 (human)0.021Glucose levelnon-insulin-dependent6691196032911960Human
1298458BW9_HBody weight QTL 9 (human)2.70.0002Body fat amount6691196032911960Human
407145165GWAS794141_Hresponse to vaccine QTL GWAS794141 (human)0.000007response to vaccine63111804731118048Human
1298431RA11_HRheumatoid arthritis QTL 11 (human)0.0000024Joint/bone inflammationrheumatoid arthritis61991188340191709Human
407180107GWAS829083_HOral ulcer QTL GWAS829083 (human)3e-20Oral ulcer63111864731118648Human
407068531GWAS717507_HInguinal hernia QTL GWAS717507 (human)5e-08Inguinal hernia63111757931117580Human
406958225GWAS607201_Hasthma QTL GWAS607201 (human)7e-08asthma63112036831120369Human
1358854MULTSCL4_HMultiple sclerosis susceptibility QTL 4 (human)Multiple sclerosis susceptibility6691196032911960Human
406958228GWAS607204_Hasthma QTL GWAS607204 (human)2e-11asthma63112036831120369Human
407074331GWAS723307_HMHC class I polypeptide-related sequence B measurement QTL GWAS723307 (human)4e-15MHC class I polypeptide-related sequence B measurement63111957731119578Human
407156925GWAS805901_Hstreptococcus seropositivity QTL GWAS805901 (human)8e-09streptococcus seropositivity63111515531115156Human
407275964GWAS924940_Hbody height QTL GWAS924940 (human)1e-14body height (VT:0001253)body height (CMO:0000106)63111639331116394Human
1358857MULTSCL19_HMultiple sclerosis susceptibility QTL 19 (human)Multiple sclerosis susceptibility61958431145584311Human
1643399BMD5_HBone mineral density QTL 5 (human)2.320.0005Bone mineral density6691196032911960Human
407225915GWAS874891_Hpulse pressure measurement QTL GWAS874891 (human)1e-10pulse pressure measurementpulse pressure (CMO:0000292)63111603631116037Human

Markers in Region
D6S1607  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37629,303,466 - 29,303,665UniSTSGRCh37
GRCh37640,524,302 - 40,524,584UniSTSGRCh37
Build 36640,632,280 - 40,632,562RGDNCBI36
Celera642,076,850 - 42,077,128RGD
Celera630,909,644 - 30,909,843UniSTS
HuRef629,111,076 - 29,111,275UniSTS
HuRef640,241,788 - 40,242,064UniSTS
Marshfield Genetic Map659.34RGD
Genethon Genetic Map659.6UniSTS
RH17634  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37631,082,933 - 31,083,162UniSTSGRCh37
Build 36631,190,912 - 31,191,141RGDNCBI36
Celera632,683,151 - 32,683,380RGD
Cytogenetic Map6p21.3UniSTS
HuRef630,885,446 - 30,885,675UniSTS
GeneMap99-GB4 RH Map6117.75UniSTS
NCBI RH Map6471.6UniSTS
D6S1727  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37631,083,594 - 31,083,701UniSTSGRCh37
Build 36631,191,573 - 31,191,680RGDNCBI36
Celera632,683,812 - 32,683,919RGD
Cytogenetic Map6p21.3UniSTS
HuRef630,886,107 - 30,886,214UniSTS
GeneMap99-GB4 RH Map6118.61UniSTS
Whitehead-YAC Contig Map6 UniSTS
RH15771  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map6p21.3UniSTS
GeneMap99-GB4 RH Map6117.86UniSTS
NCBI RH Map6471.6UniSTS
D6S1701  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map6p21.3UniSTS
Marshfield Genetic Map647.71UniSTS
Genethon Genetic Map647.6UniSTS
deCODE Assembly Map652.75UniSTS
D6S1607  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map6p21.2-p21.1UniSTS
Cytogenetic Map6p21.3UniSTS
Marshfield Genetic Map659.34UniSTS
Genethon Genetic Map659.6UniSTS
D6S276  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map6p21.3UniSTS
Cytogenetic Map6p22.1UniSTS
Cytogenetic Map6p22.3-p22.2UniSTS
Cytogenetic Map6pUniSTS
Marshfield Genetic Map644.41UniSTS
Genethon Genetic Map644.9UniSTS
deCODE Assembly Map647.93UniSTS
Whitehead-YAC Contig Map6 UniSTS


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
450 1050 1499 985 1925 632 970 3 143 282 78 1592 2304 2169 7 820 351 745 799 81 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NG_012192 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NG_021348 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001264 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB088114 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB103620 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB202103 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF030130 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF224747 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF224748 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF224749 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF224750 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF224751 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF224752 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF224753 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF224754 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF224755 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF224756 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF224757 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF224758 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF286165 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AH012167 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AH012168 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AH012169 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI768204 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ238461 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ238462 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ238463 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ238464 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ238465 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ238466 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ238467 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK292636 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL662844 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL662867 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL773544 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AU134804 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY328474 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY328475 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC031993 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX927139 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471081 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068272 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CR753819 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CR759805 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GQ472773 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KC312698 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY500777 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY500778 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY500779 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY500780 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY500781 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY500782 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY500783 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY500784 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY500785 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY500786 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY500787 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  L20815 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENST00000376288   ⟹   ENSP00000365465
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl631,115,087 - 31,120,446 (-)Ensembl
RefSeq Acc Id: NM_001264   ⟹   NP_001255
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38631,115,087 - 31,120,446 (-)NCBI
GRCh37631,082,865 - 31,088,252 (-)ENTREZGENE
Build 36631,190,849 - 31,196,202 (-)NCBI Archive
HuRef630,885,378 - 30,890,761 (-)ENTREZGENE
CHM1_1631,084,956 - 31,090,339 (-)NCBI
T2T-CHM13v2.0630,982,815 - 30,988,170 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001255 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA21321 (Get FASTA)   NCBI Sequence Viewer  
  AAC24196 (Get FASTA)   NCBI Sequence Viewer  
  AAF78559 (Get FASTA)   NCBI Sequence Viewer  
  AAF78560 (Get FASTA)   NCBI Sequence Viewer  
  AAF78561 (Get FASTA)   NCBI Sequence Viewer  
  AAF78562 (Get FASTA)   NCBI Sequence Viewer  
  AAF78563 (Get FASTA)   NCBI Sequence Viewer  
  AAF78564 (Get FASTA)   NCBI Sequence Viewer  
  AAF78565 (Get FASTA)   NCBI Sequence Viewer  
  AAF78566 (Get FASTA)   NCBI Sequence Viewer  
  AAF78567 (Get FASTA)   NCBI Sequence Viewer  
  AAF78568 (Get FASTA)   NCBI Sequence Viewer  
  AAF78569 (Get FASTA)   NCBI Sequence Viewer  
  AAF78570 (Get FASTA)   NCBI Sequence Viewer  
  AAG02419 (Get FASTA)   NCBI Sequence Viewer  
  AAH31993 (Get FASTA)   NCBI Sequence Viewer  
  AAN70994 (Get FASTA)   NCBI Sequence Viewer  
  AAN70995 (Get FASTA)   NCBI Sequence Viewer  
  AAN70996 (Get FASTA)   NCBI Sequence Viewer  
  AAP94640 (Get FASTA)   NCBI Sequence Viewer  
  AAP94641 (Get FASTA)   NCBI Sequence Viewer  
  ACZ95707 (Get FASTA)   NCBI Sequence Viewer  
  AGG40963 (Get FASTA)   NCBI Sequence Viewer  
  AQY77247 (Get FASTA)   NCBI Sequence Viewer  
  AQY77248 (Get FASTA)   NCBI Sequence Viewer  
  AQY77249 (Get FASTA)   NCBI Sequence Viewer  
  AQY77250 (Get FASTA)   NCBI Sequence Viewer  
  AQY77251 (Get FASTA)   NCBI Sequence Viewer  
  AQY77252 (Get FASTA)   NCBI Sequence Viewer  
  AQY77253 (Get FASTA)   NCBI Sequence Viewer  
  AQY77254 (Get FASTA)   NCBI Sequence Viewer  
  AQY77255 (Get FASTA)   NCBI Sequence Viewer  
  AQY77256 (Get FASTA)   NCBI Sequence Viewer  
  AQY77257 (Get FASTA)   NCBI Sequence Viewer  
  BAC54948 (Get FASTA)   NCBI Sequence Viewer  
  BAE78625 (Get FASTA)   NCBI Sequence Viewer  
  BAF31283 (Get FASTA)   NCBI Sequence Viewer  
  BAF85325 (Get FASTA)   NCBI Sequence Viewer  
  CAB57266 (Get FASTA)   NCBI Sequence Viewer  
  CAB57267 (Get FASTA)   NCBI Sequence Viewer  
  CAB57268 (Get FASTA)   NCBI Sequence Viewer  
  CAB57269 (Get FASTA)   NCBI Sequence Viewer  
  CAB57270 (Get FASTA)   NCBI Sequence Viewer  
  CAB57271 (Get FASTA)   NCBI Sequence Viewer  
  CAB57272 (Get FASTA)   NCBI Sequence Viewer  
  EAX03358 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSP00000259726.6
  ENSP00000365465
  ENSP00000365465.2
  ENSP00000373023.4
  ENSP00000388386.2
  ENSP00000392863.2
  ENSP00000399604.2
GenBank Protein Q15517 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001255   ⟸   NM_001264
- Peptide Label: precursor
- UniProtKB: Q9UIP0 (UniProtKB/Swiss-Prot),   Q9UIN9 (UniProtKB/Swiss-Prot),   Q9UIN8 (UniProtKB/Swiss-Prot),   Q9UIN7 (UniProtKB/Swiss-Prot),   Q9UIN6 (UniProtKB/Swiss-Prot),   Q9UBH8 (UniProtKB/Swiss-Prot),   Q9NRH8 (UniProtKB/Swiss-Prot),   Q9NRH7 (UniProtKB/Swiss-Prot),   Q9NRH6 (UniProtKB/Swiss-Prot),   Q9NRH5 (UniProtKB/Swiss-Prot),   Q9NRH4 (UniProtKB/Swiss-Prot),   Q9NPG5 (UniProtKB/Swiss-Prot),   Q9NPE0 (UniProtKB/Swiss-Prot),   Q9NP52 (UniProtKB/Swiss-Prot),   Q95IF9 (UniProtKB/Swiss-Prot),   Q8N5P3 (UniProtKB/Swiss-Prot),   Q8IZU6 (UniProtKB/Swiss-Prot),   Q8IZU5 (UniProtKB/Swiss-Prot),   Q8IZU4 (UniProtKB/Swiss-Prot),   Q86Z04 (UniProtKB/Swiss-Prot),   Q7LA71 (UniProtKB/Swiss-Prot),   Q7LA70 (UniProtKB/Swiss-Prot),   Q5STD2 (UniProtKB/Swiss-Prot),   Q5SQ85 (UniProtKB/Swiss-Prot),   Q15517 (UniProtKB/Swiss-Prot),   O43509 (UniProtKB/Swiss-Prot),   B0UYZ7 (UniProtKB/Swiss-Prot),   B0S7V2 (UniProtKB/Swiss-Prot),   G8JLG2 (UniProtKB/TrEMBL),   A0A1U9X8X8 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSP00000365465   ⟸   ENST00000376288

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q15517-F1-model_v2 AlphaFold Q15517 1-529 view protein structure

Promoters
RGD ID:6872456
Promoter ID:EPDNEW_H9393
Type:initiation region
Name:CDSN_1
Description:corneodesmosin
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38631,120,446 - 31,120,506EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:1802 AgrOrtholog
COSMIC CDSN COSMIC
Ensembl Genes ENSG00000137197 UniProtKB/Swiss-Prot
  ENSG00000204539 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
  ENSG00000206460 UniProtKB/TrEMBL
  ENSG00000237114 UniProtKB/Swiss-Prot
  ENSG00000237123 UniProtKB/Swiss-Prot
  ENSG00000237165 UniProtKB/Swiss-Prot
Ensembl Transcript ENST00000259726.6 UniProtKB/Swiss-Prot
  ENST00000376288 ENTREZGENE
  ENST00000376288.3 UniProtKB/Swiss-Prot
  ENST00000383531.4 UniProtKB/TrEMBL
  ENST00000418599.2 UniProtKB/Swiss-Prot
  ENST00000445893.2 UniProtKB/Swiss-Prot
  ENST00000457875.2 UniProtKB/Swiss-Prot
GTEx ENSG00000137197 GTEx
  ENSG00000204539 GTEx
  ENSG00000206460 GTEx
  ENSG00000237114 GTEx
  ENSG00000237123 GTEx
  ENSG00000237165 GTEx
HGNC ID HGNC:1802 ENTREZGENE
Human Proteome Map CDSN Human Proteome Map
InterPro Corneodesmosin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:1041 UniProtKB/Swiss-Prot
NCBI Gene 1041 ENTREZGENE
OMIM 602593 OMIM
PANTHER CORNEODESMOSIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR23207 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA26348 PharmGKB
UniProt A0A1U9X8X8 ENTREZGENE, UniProtKB/TrEMBL
  B0S7V2 ENTREZGENE
  B0UYZ7 ENTREZGENE
  CDSN_HUMAN UniProtKB/Swiss-Prot
  D2IYL2_HUMAN UniProtKB/TrEMBL
  G8JLG2 ENTREZGENE
  M1SWB8_HUMAN UniProtKB/TrEMBL
  O43509 ENTREZGENE
  Q15517 ENTREZGENE
  Q2L6G8_HUMAN UniProtKB/TrEMBL
  Q5SQ85 ENTREZGENE
  Q5STD2 ENTREZGENE
  Q7LA70 ENTREZGENE
  Q7LA71 ENTREZGENE
  Q7Z559_HUMAN UniProtKB/TrEMBL
  Q7Z560_HUMAN UniProtKB/TrEMBL
  Q86Z04 ENTREZGENE
  Q8IZU4 ENTREZGENE
  Q8IZU5 ENTREZGENE
  Q8IZU6 ENTREZGENE
  Q8N5P3 ENTREZGENE
  Q95IF9 ENTREZGENE
  Q9NP52 ENTREZGENE
  Q9NPE0 ENTREZGENE
  Q9NPG5 ENTREZGENE
  Q9NRH4 ENTREZGENE
  Q9NRH5 ENTREZGENE
  Q9NRH6 ENTREZGENE
  Q9NRH7 ENTREZGENE
  Q9NRH8 ENTREZGENE
  Q9UBH8 ENTREZGENE
  Q9UIN6 ENTREZGENE
  Q9UIN7 ENTREZGENE
  Q9UIN8 ENTREZGENE
  Q9UIN9 ENTREZGENE
  Q9UIP0 ENTREZGENE
UniProt Secondary B0S7V2 UniProtKB/Swiss-Prot
  B0UYZ7 UniProtKB/Swiss-Prot
  G8JLG2 UniProtKB/Swiss-Prot
  O43509 UniProtKB/Swiss-Prot
  Q5SQ85 UniProtKB/Swiss-Prot
  Q5STD2 UniProtKB/Swiss-Prot
  Q7LA70 UniProtKB/Swiss-Prot
  Q7LA71 UniProtKB/Swiss-Prot
  Q86Z04 UniProtKB/Swiss-Prot
  Q8IZU4 UniProtKB/Swiss-Prot
  Q8IZU5 UniProtKB/Swiss-Prot
  Q8IZU6 UniProtKB/Swiss-Prot
  Q8N5P3 UniProtKB/Swiss-Prot
  Q95IF9 UniProtKB/Swiss-Prot
  Q9NP52 UniProtKB/Swiss-Prot
  Q9NPE0 UniProtKB/Swiss-Prot
  Q9NPG5 UniProtKB/Swiss-Prot
  Q9NRH4 UniProtKB/Swiss-Prot
  Q9NRH5 UniProtKB/Swiss-Prot
  Q9NRH6 UniProtKB/Swiss-Prot
  Q9NRH7 UniProtKB/Swiss-Prot
  Q9NRH8 UniProtKB/Swiss-Prot
  Q9UBH8 UniProtKB/Swiss-Prot
  Q9UIN6 UniProtKB/Swiss-Prot
  Q9UIN7 UniProtKB/Swiss-Prot
  Q9UIN8 UniProtKB/Swiss-Prot
  Q9UIN9 UniProtKB/Swiss-Prot
  Q9UIP0 UniProtKB/Swiss-Prot