PCDHAC1 (protocadherin alpha subfamily C, 1) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: PCDHAC1 (protocadherin alpha subfamily C, 1) Homo sapiens
Analyze
Symbol: PCDHAC1
Name: protocadherin alpha subfamily C, 1
RGD ID: 1353050
HGNC Page HGNC:8676
Description: Predicted to enable calcium ion binding activity. Predicted to be involved in cell adhesion. Predicted to be located in plasma membrane.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: PCDH-ALPHA-C1; protocadherin alpha-C1
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Naked Mole-Rat
Alliance Genes
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385140,926,299 - 141,012,347 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5140,926,299 - 141,012,347 (+)EnsemblGRCh38hg38GRCh38
GRCh375140,305,884 - 140,391,932 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365140,286,486 - 140,372,113 (+)NCBINCBI36Build 36hg18NCBI36
Build 345140,286,485 - 140,289,569NCBI
Celera5136,383,115 - 136,468,708 (+)NCBICelera
Cytogenetic Map5q31.3NCBI
HuRef5135,451,037 - 135,536,628 (+)NCBIHuRef
CHM1_15139,739,496 - 139,825,092 (+)NCBICHM1_1
T2T-CHM13v2.05141,451,598 - 141,537,634 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
membrane  (IEA)
plasma membrane  (IEA,TAS)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10380929   PMID:10662547   PMID:10716726   PMID:10817752   PMID:10835267   PMID:11230163   PMID:12477932   PMID:21873635   PMID:22589738   PMID:28514442   PMID:28625976   PMID:33306668  
PMID:33961781  


Genomics

Comparative Map Data
PCDHAC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385140,926,299 - 141,012,347 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5140,926,299 - 141,012,347 (+)EnsemblGRCh38hg38GRCh38
GRCh375140,305,884 - 140,391,932 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365140,286,486 - 140,372,113 (+)NCBINCBI36Build 36hg18NCBI36
Build 345140,286,485 - 140,289,569NCBI
Celera5136,383,115 - 136,468,708 (+)NCBICelera
Cytogenetic Map5q31.3NCBI
HuRef5135,451,037 - 135,536,628 (+)NCBIHuRef
CHM1_15139,739,496 - 139,825,092 (+)NCBICHM1_1
T2T-CHM13v2.05141,451,598 - 141,537,634 (+)NCBIT2T-CHM13v2.0
Pcdhac1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391837,223,189 - 37,320,710 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1837,223,066 - 37,320,710 (+)EnsemblGRCm39 Ensembl
GRCm381837,090,136 - 37,187,657 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1837,090,013 - 37,187,657 (+)EnsemblGRCm38mm10GRCm38
MGSCv371837,249,790 - 37,347,311 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361837,216,110 - 37,313,631 (+)NCBIMGSCv36mm8
MGSCv361837,277,242 - 37,374,763 (+)NCBIMGSCv36mm8
Celera1837,529,978 - 37,530,351 (+)NCBICelera
Cytogenetic Map18B3NCBI
cM Map1819.46NCBI
Pcdhac1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21828,740,353 - 28,750,216 (+)NCBImRatBN7.2mRatBN7.2
Rnor_6.01830,114,708 - 30,215,896 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1829,987,206 - 30,215,897 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01829,810,769 - 29,924,443 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41829,826,654 - 29,928,030 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11829,853,299 - 29,954,676 (+)NCBI
Celera1828,453,339 - 28,552,754 (+)NCBICelera
Cytogenetic Map18p11NCBI
Pcdhac1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955611229,711 - 242,740 (-)NCBIChiLan1.0ChiLan1.0
PCDHAC1
(Pan paniscus - bonobo/pygmy chimpanzee)
No map positions available.
PCDHAC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1236,013,249 - 36,017,667 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha233,066,772 - 33,069,632 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0236,470,815 - 36,473,675 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1233,544,137 - 33,546,996 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0234,390,661 - 34,393,484 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0235,161,704 - 35,164,528 (+)NCBIUU_Cfam_GSD_1.0
Pcdhac1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624774216,504 - 219,816 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in PCDHAC1
60 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 5q23.3-33.2(chr5:130860928-155321811)x3 copy number gain See cases [RCV000051193] Chr5:130860928..155321811 [GRCh38]
Chr5:130196621..154701371 [GRCh37]
Chr5:130224520..154681564 [NCBI36]
Chr5:5q23.3-33.2
pathogenic
GRCh38/hg38 5q31.2-32(chr5:138871137-145812309)x1 copy number loss See cases [RCV000052142] Chr5:138871137..145812309 [GRCh38]
Chr5:138206826..145191872 [GRCh37]
Chr5:138234725..145172065 [NCBI36]
Chr5:5q31.2-32
pathogenic
GRCh38/hg38 5q21.3-33.2(chr5:106619588-156124387)x1 copy number loss See cases [RCV000053524] Chr5:106619588..156124387 [GRCh38]
Chr5:105955289..155551397 [GRCh37]
Chr5:105983188..155483975 [NCBI36]
Chr5:5q21.3-33.2
pathogenic
NM_018898.3(PCDHAC1):c.1559G>C (p.Gly520Ala) single nucleotide variant Malignant melanoma [RCV000061139] Chr5:140928451 [GRCh38]
Chr5:140308036 [GRCh37]
Chr5:140288220 [NCBI36]
Chr5:5q31.3
not provided
NM_018898.3(PCDHAC1):c.1672C>T (p.Pro558Ser) single nucleotide variant Malignant melanoma [RCV000061140] Chr5:140928564 [GRCh38]
Chr5:140308149 [GRCh37]
Chr5:140288333 [NCBI36]
Chr5:5q31.3
not provided
NM_018899.5(PCDHAC2):c.1957G>A (p.Gly653Ser) single nucleotide variant Malignant melanoma [RCV000061141] Chr5:140968723 [GRCh38]
Chr5:140348308 [GRCh37]
Chr5:140328492 [NCBI36]
Chr5:5q31.3
not provided
NM_018898.3(PCDHAC1):c.2742G>A (p.Gln914=) single nucleotide variant Malignant melanoma [RCV000061142] Chr5:141009787 [GRCh38]
Chr5:140389372 [GRCh37]
Chr5:140369556 [NCBI36]
Chr5:5q31.3
not provided
NM_018898.3(PCDHAC1):c.1688G>A (p.Gly563Asp) single nucleotide variant Malignant melanoma [RCV000066691] Chr5:140928580 [GRCh38]
Chr5:140308165 [GRCh37]
Chr5:140288349 [NCBI36]
Chr5:5q31.3
not provided
NM_018899.5(PCDHAC2):c.589C>T (p.Leu197Phe) single nucleotide variant Malignant melanoma [RCV000066692] Chr5:140967355 [GRCh38]
Chr5:140346940 [GRCh37]
Chr5:140327124 [NCBI36]
Chr5:5q31.3
not provided
NM_018899.5(PCDHAC2):c.703C>T (p.Pro235Ser) single nucleotide variant Malignant melanoma [RCV000066693] Chr5:140967469 [GRCh38]
Chr5:140347054 [GRCh37]
Chr5:140327238 [NCBI36]
Chr5:5q31.3
not provided
NM_018899.5(PCDHAC2):c.2248G>A (p.Glu750Lys) single nucleotide variant Malignant melanoma [RCV000066694] Chr5:140969014 [GRCh38]
Chr5:140348599 [GRCh37]
Chr5:140328783 [NCBI36]
Chr5:5q31.3
not provided
NM_018898.3(PCDHAC1):c.1359C>T (p.Phe453=) single nucleotide variant Malignant melanoma [RCV000066690] Chr5:140928251 [GRCh38]
Chr5:140307836 [GRCh37]
Chr5:140288020 [NCBI36]
Chr5:5q31.3
not provided
NM_018898.5(PCDHAC1):c.2396G>A (p.Arg799Gln) single nucleotide variant not provided [RCV000122558] Chr5:140929288 [GRCh38]
Chr5:140308873 [GRCh37]
Chr5:5q31.3
uncertain significance
GRCh38/hg38 5q31.3(chr5:140963199-142322798)x1 copy number loss See cases [RCV000136949] Chr5:140963199..142322798 [GRCh38]
Chr5:140453735..141702363 [GRCh37]
Chr5:140322968..141682547 [NCBI36]
Chr5:5q31.3
uncertain significance
GRCh38/hg38 5q23.3-33.2(chr5:129847794-153353546)x3 copy number gain See cases [RCV000138808] Chr5:129847794..153353546 [GRCh38]
Chr5:129183487..152733106 [GRCh37]
Chr5:129211386..152713299 [NCBI36]
Chr5:5q23.3-33.2
pathogenic
GRCh38/hg38 5q31.2-31.3(chr5:138942857-144605017)x3 copy number gain See cases [RCV000142806] Chr5:138942857..144605017 [GRCh38]
Chr5:138278546..143984580 [GRCh37]
Chr5:138306445..143964773 [NCBI36]
Chr5:5q31.2-31.3
uncertain significance
GRCh37/hg19 5q15-35.3(chr5:94844077-178830410)x3 copy number gain not provided [RCV000487658] Chr5:94844077..178830410 [GRCh37]
Chr5:5q15-35.3
likely benign
NC_000005.9:g.(?_86400000)_(154000000_?)del deletion Familial adenomatous polyposis 1 [RCV002231249]|Hereditary cancer-predisposing syndrome [RCV000554476] Chr5:86400000..154000000 [GRCh37]
Chr5:5q14.3-33.2
pathogenic
GRCh37/hg19 5q23.3-33.3(chr5:130125085-157574910)x3 copy number gain See cases [RCV000449349] Chr5:130125085..157574910 [GRCh37]
Chr5:5q23.3-33.3
pathogenic
GRCh37/hg19 5q21.3-35.3(chr5:106716357-180687338)x3 copy number gain See cases [RCV000448245] Chr5:106716357..180687338 [GRCh37]
Chr5:5q21.3-35.3
pathogenic
NM_018900.4(PCDHA1):c.2420G>A (p.Arg807His) single nucleotide variant Hirschsprung disease, susceptibility to, 1 [RCV000508600] Chr5:140978974 [GRCh38]
Chr5:140358559 [GRCh37]
Chr5:5q31.3
uncertain significance
GRCh37/hg19 5p15.1-q35.2(chr5:17628741-176575720)x1 copy number loss See cases [RCV000511978] Chr5:17628741..176575720 [GRCh37]
Chr5:5p15.1-q35.2
pathogenic
GRCh37/hg19 5p15.33-q35.3(chr5:113577-180719789)x3 copy number gain See cases [RCV000512039] Chr5:113577..180719789 [GRCh37]
Chr5:5p15.33-q35.3
pathogenic
GRCh37/hg19 5p15.33-q35.3(chr5:113577-180719789) copy number gain See cases [RCV000510723] Chr5:113577..180719789 [GRCh37]
Chr5:5p15.33-q35.3
pathogenic
NM_018898.5(PCDHAC1):c.1459G>A (p.Val487Ile) single nucleotide variant Inborn genetic diseases [RCV003275468] Chr5:140928351 [GRCh38]
Chr5:140307936 [GRCh37]
Chr5:5q31.3
likely benign
GRCh37/hg19 5q31.2-31.3(chr5:139147238-141540491)x1 copy number loss not provided [RCV000682600] Chr5:139147238..141540491 [GRCh37]
Chr5:5q31.2-31.3
pathogenic
GRCh37/hg19 5p15.33-q35.3(chr5:25328-180693344)x3 copy number gain not provided [RCV000744323] Chr5:25328..180693344 [GRCh37]
Chr5:5p15.33-q35.3
pathogenic
GRCh37/hg19 5p15.33-q35.3(chr5:13648-180905029)x3 copy number gain not provided [RCV000744317] Chr5:13648..180905029 [GRCh37]
Chr5:5p15.33-q35.3
pathogenic
GRCh37/hg19 5q31.3(chr5:140102539-140347053)x1 copy number loss not provided [RCV000745201] Chr5:140102539..140347053 [GRCh37]
Chr5:5q31.3
benign
GRCh37/hg19 5q31.3(chr5:140115433-140344242)x1 copy number loss not provided [RCV000745206] Chr5:140115433..140344242 [GRCh37]
Chr5:5q31.3
benign
NM_018899.6(PCDHAC2):c.2841C>A (p.Ile947=) single nucleotide variant not provided [RCV000881803] Chr5:141009754 [GRCh38]
Chr5:140389339 [GRCh37]
Chr5:5q31.3
likely benign
NM_031857.2(PCDHA9):c.2406C>G (p.Pro802=) single nucleotide variant not provided [RCV000922554] Chr5:140978960 [GRCh38]
Chr5:140358545 [GRCh37]
Chr5:5q31.3
likely benign
NM_018903.4(PCDHA12):c.2492C>G (p.Pro831Arg) single nucleotide variant not provided [RCV000950135] Chr5:140982540 [GRCh38]
Chr5:140362125 [GRCh37]
Chr5:5q31.3
benign|likely benign
Single allele deletion Neurodevelopmental disorder [RCV000787436] Chr5:14685137..149511942 [GRCh37]
Chr5:5p15.2-q32
uncertain significance
NM_018898.5(PCDHAC1):c.1208T>A (p.Leu403Gln) single nucleotide variant Inborn genetic diseases [RCV003272794] Chr5:140928100 [GRCh38]
Chr5:140307685 [GRCh37]
Chr5:5q31.3
uncertain significance
NM_018904.3(PCDHA13):c.2613C>T (p.Tyr871=) single nucleotide variant not provided [RCV000879250] Chr5:141009697 [GRCh38]
Chr5:140389282 [GRCh37]
Chr5:5q31.3
likely benign
NC_000005.9:g.(?_136633338)_(140998481_?)dup duplication PURA-related severe neonatal hypotonia-seizures-encephalopathy syndrome [RCV001339088] Chr5:136633338..140998481 [GRCh37]
Chr5:5q31.2-31.3
uncertain significance
NM_018907.4(PCDHA4):c.2499T>A (p.Asp833Glu) single nucleotide variant not provided [RCV001454211] Chr5:140982529 [GRCh38]
Chr5:140362114 [GRCh37]
Chr5:5q31.3
likely benign
GRCh37/hg19 5q31.2-31.3(chr5:139493717-140517454)x1 copy number loss PURA-related severe neonatal hypotonia-seizures-encephalopathy syndrome [RCV001801202] Chr5:139493717..140517454 [GRCh37]
Chr5:5q31.2-31.3
pathogenic
GRCh37/hg19 5q23.3-33.3(chr5:130125085-157574910) copy number gain not specified [RCV002053526] Chr5:130125085..157574910 [GRCh37]
Chr5:5q23.3-33.3
pathogenic
GRCh37/hg19 5q31.3(chr5:140082762-140773954)x3 copy number gain not provided [RCV002474614] Chr5:140082762..140773954 [GRCh37]
Chr5:5q31.3
uncertain significance
NM_018899.6(PCDHAC2):c.2111T>C (p.Ile704Thr) single nucleotide variant Inborn genetic diseases [RCV002728588] Chr5:140968877 [GRCh38]
Chr5:140348462 [GRCh37]
Chr5:5q31.3
uncertain significance
NM_018898.5(PCDHAC1):c.881A>G (p.Gln294Arg) single nucleotide variant Inborn genetic diseases [RCV002817987] Chr5:140927773 [GRCh38]
Chr5:140307358 [GRCh37]
Chr5:5q31.3
likely benign
NM_018898.5(PCDHAC1):c.2224A>G (p.Ile742Val) single nucleotide variant Inborn genetic diseases [RCV002906686] Chr5:140929116 [GRCh38]
Chr5:140308701 [GRCh37]
Chr5:5q31.3
likely benign
NM_018898.5(PCDHAC1):c.143C>A (p.Ala48Asp) single nucleotide variant Inborn genetic diseases [RCV002840464] Chr5:140927035 [GRCh38]
Chr5:140306620 [GRCh37]
Chr5:5q31.3
uncertain significance
NM_018899.6(PCDHAC2):c.1904T>C (p.Val635Ala) single nucleotide variant Inborn genetic diseases [RCV002794292] Chr5:140968670 [GRCh38]
Chr5:140348255 [GRCh37]
Chr5:5q31.3
uncertain significance
NM_018898.5(PCDHAC1):c.106G>T (p.Val36Leu) single nucleotide variant Inborn genetic diseases [RCV002883791] Chr5:140926998 [GRCh38]
Chr5:140306583 [GRCh37]
Chr5:5q31.3
uncertain significance
NM_018899.6(PCDHAC2):c.2038G>T (p.Val680Leu) single nucleotide variant Inborn genetic diseases [RCV002990311] Chr5:140968804 [GRCh38]
Chr5:140348389 [GRCh37]
Chr5:5q31.3
uncertain significance
NM_018899.6(PCDHAC2):c.1387A>G (p.Asn463Asp) single nucleotide variant Inborn genetic diseases [RCV002688427] Chr5:140968153 [GRCh38]
Chr5:140347738 [GRCh37]
Chr5:5q31.3
uncertain significance
NM_018899.6(PCDHAC2):c.682A>G (p.Thr228Ala) single nucleotide variant Inborn genetic diseases [RCV002732033] Chr5:140967448 [GRCh38]
Chr5:140347033 [GRCh37]
Chr5:5q31.3
uncertain significance
NM_018898.5(PCDHAC1):c.1204C>A (p.Pro402Thr) single nucleotide variant Inborn genetic diseases [RCV002849180] Chr5:140928096 [GRCh38]
Chr5:140307681 [GRCh37]
Chr5:5q31.3
uncertain significance
NM_018898.5(PCDHAC1):c.827C>A (p.Thr276Lys) single nucleotide variant Inborn genetic diseases [RCV002692321] Chr5:140927719 [GRCh38]
Chr5:140307304 [GRCh37]
Chr5:5q31.3
uncertain significance
NM_018898.5(PCDHAC1):c.778C>A (p.Pro260Thr) single nucleotide variant Inborn genetic diseases [RCV002848739] Chr5:140927670 [GRCh38]
Chr5:140307255 [GRCh37]
Chr5:5q31.3
uncertain significance
NM_018899.6(PCDHAC2):c.2212G>T (p.Gly738Cys) single nucleotide variant Inborn genetic diseases [RCV002925632] Chr5:140968978 [GRCh38]
Chr5:140348563 [GRCh37]
Chr5:5q31.3
uncertain significance
NM_018898.5(PCDHAC1):c.540C>G (p.Ser180Arg) single nucleotide variant Inborn genetic diseases [RCV002738883] Chr5:140927432 [GRCh38]
Chr5:140307017 [GRCh37]
Chr5:5q31.3
uncertain significance
NM_018899.6(PCDHAC2):c.1193G>A (p.Arg398Gln) single nucleotide variant Inborn genetic diseases [RCV002737088] Chr5:140967959 [GRCh38]
Chr5:140347544 [GRCh37]
Chr5:5q31.3
uncertain significance
NM_018899.6(PCDHAC2):c.811C>T (p.Pro271Ser) single nucleotide variant Inborn genetic diseases [RCV002737973] Chr5:140967577 [GRCh38]
Chr5:140347162 [GRCh37]
Chr5:5q31.3
uncertain significance
NM_018898.5(PCDHAC1):c.452A>G (p.Asp151Gly) single nucleotide variant Inborn genetic diseases [RCV002977034] Chr5:140927344 [GRCh38]
Chr5:140306929 [GRCh37]
Chr5:5q31.3
uncertain significance
NM_018899.6(PCDHAC2):c.1292G>A (p.Arg431Gln) single nucleotide variant Inborn genetic diseases [RCV002694026] Chr5:140968058 [GRCh38]
Chr5:140347643 [GRCh37]
Chr5:5q31.3
uncertain significance
NM_018899.6(PCDHAC2):c.1195A>C (p.Lys399Gln) single nucleotide variant Inborn genetic diseases [RCV002830954] Chr5:140967961 [GRCh38]
Chr5:140347546 [GRCh37]
Chr5:5q31.3
uncertain significance
NM_018898.5(PCDHAC1):c.535G>A (p.Gly179Ser) single nucleotide variant Inborn genetic diseases [RCV002763242] Chr5:140927427 [GRCh38]
Chr5:140307012 [GRCh37]
Chr5:5q31.3
uncertain significance
NM_018898.5(PCDHAC1):c.2043C>G (p.Asn681Lys) single nucleotide variant Inborn genetic diseases [RCV002874674] Chr5:140928935 [GRCh38]
Chr5:140308520 [GRCh37]
Chr5:5q31.3
uncertain significance
NM_018899.6(PCDHAC2):c.2252G>A (p.Arg751Lys) single nucleotide variant Inborn genetic diseases [RCV002984541] Chr5:140969018 [GRCh38]
Chr5:140348603 [GRCh37]
Chr5:5q31.3
uncertain significance
NM_018898.5(PCDHAC1):c.1222A>C (p.Ile408Leu) single nucleotide variant Inborn genetic diseases [RCV002699601] Chr5:140928114 [GRCh38]
Chr5:140307699 [GRCh37]
Chr5:5q31.3
uncertain significance
NM_018898.5(PCDHAC1):c.1517C>T (p.Ala506Val) single nucleotide variant Inborn genetic diseases [RCV002712475] Chr5:140928409 [GRCh38]
Chr5:140307994 [GRCh37]
Chr5:5q31.3
uncertain significance
NM_018898.5(PCDHAC1):c.492C>G (p.Ser164Arg) single nucleotide variant Inborn genetic diseases [RCV002644598] Chr5:140927384 [GRCh38]
Chr5:140306969 [GRCh37]
Chr5:5q31.3
uncertain significance
NM_018899.6(PCDHAC2):c.1589G>C (p.Ser530Thr) single nucleotide variant Inborn genetic diseases [RCV002940783] Chr5:140968355 [GRCh38]
Chr5:140347940 [GRCh37]
Chr5:5q31.3
uncertain significance
NM_018898.5(PCDHAC1):c.1649A>G (p.Asp550Gly) single nucleotide variant Inborn genetic diseases [RCV002896573] Chr5:140928541 [GRCh38]
Chr5:140308126 [GRCh37]
Chr5:5q31.3
uncertain significance
NM_018898.5(PCDHAC1):c.973A>G (p.Lys325Glu) single nucleotide variant Inborn genetic diseases [RCV002670640] Chr5:140927865 [GRCh38]
Chr5:140307450 [GRCh37]
Chr5:5q31.3
uncertain significance
NM_018898.5(PCDHAC1):c.2236A>G (p.Thr746Ala) single nucleotide variant Inborn genetic diseases [RCV002672346] Chr5:140929128 [GRCh38]
Chr5:140308713 [GRCh37]
Chr5:5q31.3
uncertain significance
NM_018898.5(PCDHAC1):c.187G>C (p.Glu63Gln) single nucleotide variant Inborn genetic diseases [RCV002714276] Chr5:140927079 [GRCh38]
Chr5:140306664 [GRCh37]
Chr5:5q31.3
uncertain significance
NM_018899.6(PCDHAC2):c.406G>A (p.Val136Met) single nucleotide variant Inborn genetic diseases [RCV002832459] Chr5:140967172 [GRCh38]
Chr5:140346757 [GRCh37]
Chr5:5q31.3
uncertain significance
NM_018898.5(PCDHAC1):c.941A>G (p.Asp314Gly) single nucleotide variant Inborn genetic diseases [RCV002747808] Chr5:140927833 [GRCh38]
Chr5:140307418 [GRCh37]
Chr5:5q31.3
uncertain significance
NM_018898.5(PCDHAC1):c.1748T>C (p.Val583Ala) single nucleotide variant Inborn genetic diseases [RCV002813122] Chr5:140928640 [GRCh38]
Chr5:140308225 [GRCh37]
Chr5:5q31.3
uncertain significance
NM_018899.6(PCDHAC2):c.1067T>G (p.Val356Gly) single nucleotide variant Inborn genetic diseases [RCV002940412] Chr5:140967833 [GRCh38]
Chr5:140347418 [GRCh37]
Chr5:5q31.3
uncertain significance
NM_018898.5(PCDHAC1):c.1165G>T (p.Ala389Ser) single nucleotide variant Inborn genetic diseases [RCV002944880] Chr5:140928057 [GRCh38]
Chr5:140307642 [GRCh37]
Chr5:5q31.3
uncertain significance
NM_018899.6(PCDHAC2):c.1349C>T (p.Thr450Ile) single nucleotide variant Inborn genetic diseases [RCV002679517] Chr5:140968115 [GRCh38]
Chr5:140347700 [GRCh37]
Chr5:5q31.3
uncertain significance
NM_018898.5(PCDHAC1):c.1999T>A (p.Phe667Ile) single nucleotide variant Inborn genetic diseases [RCV003220292] Chr5:140928891 [GRCh38]
Chr5:140308476 [GRCh37]
Chr5:5q31.3
uncertain significance
NM_018899.6(PCDHAC2):c.776A>G (p.Gln259Arg) single nucleotide variant Inborn genetic diseases [RCV003211443] Chr5:140967542 [GRCh38]
Chr5:140347127 [GRCh37]
Chr5:5q31.3
uncertain significance
NM_018898.5(PCDHAC1):c.517A>G (p.Met173Val) single nucleotide variant Inborn genetic diseases [RCV003212950] Chr5:140927409 [GRCh38]
Chr5:140306994 [GRCh37]
Chr5:5q31.3
uncertain significance
NM_018898.5(PCDHAC1):c.2018C>G (p.Pro673Arg) single nucleotide variant Inborn genetic diseases [RCV003200951] Chr5:140928910 [GRCh38]
Chr5:140308495 [GRCh37]
Chr5:5q31.3
uncertain significance
NM_018898.5(PCDHAC1):c.1123G>C (p.Val375Leu) single nucleotide variant Inborn genetic diseases [RCV003205958] Chr5:140928015 [GRCh38]
Chr5:140307600 [GRCh37]
Chr5:5q31.3
uncertain significance
NM_018899.6(PCDHAC2):c.2197C>T (p.Arg733Cys) single nucleotide variant Inborn genetic diseases [RCV003344465] Chr5:140968963 [GRCh38]
Chr5:140348548 [GRCh37]
Chr5:5q31.3
uncertain significance
NM_018898.5(PCDHAC1):c.1915C>T (p.Arg639Trp) single nucleotide variant Inborn genetic diseases [RCV003359670] Chr5:140928807 [GRCh38]
Chr5:140308392 [GRCh37]
Chr5:5q31.3
uncertain significance
NM_018898.5(PCDHAC1):c.1067G>A (p.Gly356Asp) single nucleotide variant Inborn genetic diseases [RCV003343417] Chr5:140927959 [GRCh38]
Chr5:140307544 [GRCh37]
Chr5:5q31.3
uncertain significance
NM_018898.5(PCDHAC1):c.604G>A (p.Val202Met) single nucleotide variant Inborn genetic diseases [RCV003371568] Chr5:140927496 [GRCh38]
Chr5:140307081 [GRCh37]
Chr5:5q31.3
uncertain significance
NM_018898.5(PCDHAC1):c.856G>A (p.Val286Met) single nucleotide variant Inborn genetic diseases [RCV003347967] Chr5:140927748 [GRCh38]
Chr5:140307333 [GRCh37]
Chr5:5q31.3
uncertain significance
NM_018899.6(PCDHAC2):c.1582A>G (p.Ser528Gly) single nucleotide variant Inborn genetic diseases [RCV003348290] Chr5:140968348 [GRCh38]
Chr5:140347933 [GRCh37]
Chr5:5q31.3
uncertain significance
NM_018898.5(PCDHAC1):c.1195A>T (p.Ile399Phe) single nucleotide variant Inborn genetic diseases [RCV003369708] Chr5:140928087 [GRCh38]
Chr5:140307672 [GRCh37]
Chr5:5q31.3
uncertain significance
NM_018898.5(PCDHAC1):c.989T>C (p.Val330Ala) single nucleotide variant Inborn genetic diseases [RCV003347858] Chr5:140927881 [GRCh38]
Chr5:140307466 [GRCh37]
Chr5:5q31.3
uncertain significance
NM_018898.5(PCDHAC1):c.1735T>G (p.Leu579Val) single nucleotide variant Inborn genetic diseases [RCV003369325] Chr5:140928627 [GRCh38]
Chr5:140308212 [GRCh37]
Chr5:5q31.3
uncertain significance
NM_018898.5(PCDHAC1):c.1771G>T (p.Gly591Cys) single nucleotide variant Inborn genetic diseases [RCV003386675] Chr5:140928663 [GRCh38]
Chr5:140308248 [GRCh37]
Chr5:5q31.3
uncertain significance
NM_018899.6(PCDHAC2):c.1161C>G (p.Leu387=) single nucleotide variant not provided [RCV003429820] Chr5:140967927 [GRCh38]
Chr5:140347512 [GRCh37]
Chr5:5q31.3
likely benign
NM_018899.6(PCDHAC2):c.2460G>A (p.Ser820=) single nucleotide variant not provided [RCV003429821] Chr5:140969226 [GRCh38]
Chr5:140348811 [GRCh37]
Chr5:5q31.3
likely benign
NM_018899.6(PCDHAC2):c.1911G>A (p.Leu637=) single nucleotide variant not provided [RCV003457448] Chr5:140968677 [GRCh38]
Chr5:140348262 [GRCh37]
Chr5:5q31.3
likely benign
NM_018898.5(PCDHAC1):c.1671T>C (p.Phe557=) single nucleotide variant not provided [RCV003429819] Chr5:140928563 [GRCh38]
Chr5:140308148 [GRCh37]
Chr5:5q31.3
likely benign
NM_018899.6(PCDHAC2):c.480G>T (p.Ser160=) single nucleotide variant not provided [RCV003428630] Chr5:140967246 [GRCh38]
Chr5:140346831 [GRCh37]
Chr5:5q31.3
likely benign
NM_018899.6(PCDHAC2):c.2207C>A (p.Ala736Glu) single nucleotide variant Inborn genetic diseases [RCV003381089] Chr5:140968973 [GRCh38]
Chr5:140348558 [GRCh37]
Chr5:5q31.3
uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1270
Count of miRNA genes:744
Interacting mature miRNAs:890
Transcripts:ENST00000253807, ENST00000409700
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
D5S658  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh375140,372,916 - 140,373,189UniSTSGRCh37
Build 365140,353,100 - 140,353,373RGDNCBI36
Celera5136,449,700 - 136,449,973RGD
Cytogenetic Map5q31UniSTS
HuRef5135,517,629 - 135,517,894UniSTS
Marshfield Genetic Map5142.92RGD
Marshfield Genetic Map5142.92UniSTS
Genethon Genetic Map5142.6UniSTS
Whitehead-RH Map5441.7UniSTS
Whitehead-YAC Contig Map5 UniSTS
NCBI RH Map5889.1UniSTS
RH91795  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh375140,389,215 - 140,389,359UniSTSGRCh37
Build 365140,369,399 - 140,369,543RGDNCBI36
Celera5136,465,994 - 136,466,138RGD
Cytogenetic Map5q31UniSTS
HuRef5135,533,914 - 135,534,058UniSTS
GeneMap99-GB4 RH Map5530.5UniSTS
RH122893  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh375140,344,075 - 140,344,397UniSTSGRCh37
Build 365140,324,259 - 140,324,581RGDNCBI36
Celera5136,420,859 - 136,421,181RGD
Cytogenetic Map5q31UniSTS
HuRef5135,488,790 - 135,489,112UniSTS
TNG Radiation Hybrid Map565054.0UniSTS
RH118816  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh375140,365,779 - 140,366,073UniSTSGRCh37
Build 365140,345,963 - 140,346,257RGDNCBI36
Celera5136,442,563 - 136,442,857RGD
Cytogenetic Map5q31UniSTS
HuRef5135,510,494 - 135,510,788UniSTS
TNG Radiation Hybrid Map565069.0UniSTS
D5S1683E  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh375140,390,021 - 140,390,212UniSTSGRCh37
Build 365140,370,205 - 140,370,396RGDNCBI36
Celera5136,466,800 - 136,466,991RGD
Cytogenetic Map5q31UniSTS
HuRef5135,534,720 - 135,534,911UniSTS
SHGC-150174  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh375140,372,907 - 140,373,191UniSTSGRCh37
Build 365140,353,091 - 140,353,375RGDNCBI36
Celera5136,449,691 - 136,449,975RGD
Cytogenetic Map5q31UniSTS
HuRef5135,517,620 - 135,517,896UniSTS
TNG Radiation Hybrid Map565089.0UniSTS
TNG Radiation Hybrid Map174062.0UniSTS
bac5366T  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh375140,362,911 - 140,363,118UniSTSGRCh37
Build 365140,343,095 - 140,343,302RGDNCBI36
Celera5136,439,695 - 136,439,902RGD
Cytogenetic Map5q31UniSTS
HuRef5135,507,626 - 135,507,833UniSTS
bac5373T  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh375140,363,259 - 140,363,393UniSTSGRCh37
Build 365140,343,443 - 140,343,577RGDNCBI36
Celera5136,440,043 - 136,440,177RGD
Cytogenetic Map5q31UniSTS
HuRef5135,507,974 - 135,508,108UniSTS
PMC311048P1  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh375140,362,060 - 140,362,148UniSTSGRCh37
Build 365140,342,244 - 140,342,332RGDNCBI36
Celera5136,438,844 - 136,438,932RGD
HuRef5135,506,775 - 135,506,863UniSTS
PCDHA4_1031  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh375140,390,470 - 140,391,194UniSTSGRCh37
Build 365140,370,654 - 140,371,378RGDNCBI36
Celera5136,467,249 - 136,467,973RGD
HuRef5135,535,169 - 135,535,893UniSTS
A004B11  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh375140,307,787 - 140,307,943UniSTSGRCh37
Build 365140,287,971 - 140,288,127RGDNCBI36
Celera5136,384,600 - 136,384,756RGD
Cytogenetic Map5q31UniSTS
HuRef5135,452,522 - 135,452,678UniSTS
GeneMap99-GB4 RH Map5531.62UniSTS
NCBI RH Map5889.1UniSTS
RH15971  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh375140,390,200 - 140,390,359UniSTSGRCh37
Build 365140,370,384 - 140,370,543RGDNCBI36
Celera5136,466,979 - 136,467,138RGD
Cytogenetic Map5q31UniSTS
HuRef5135,534,899 - 135,535,058UniSTS
GeneMap99-GB4 RH Map5531.42UniSTS
NCBI RH Map5889.1UniSTS
IB766  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh375140,391,639 - 140,391,867UniSTSGRCh37
Build 365140,371,823 - 140,372,051RGDNCBI36
Celera5136,468,418 - 136,468,646RGD
Cytogenetic Map5q31UniSTS
HuRef5135,536,338 - 135,536,566UniSTS
GeneMap99-GB4 RH Map5531.42UniSTS
Whitehead-RH Map5441.7UniSTS
NCBI RH Map5889.1UniSTS
WI-19540  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh375140,391,613 - 140,391,874UniSTSGRCh37
Build 365140,371,797 - 140,372,058RGDNCBI36
Celera5136,468,392 - 136,468,653RGD
Cytogenetic Map5q31UniSTS
HuRef5135,536,312 - 135,536,573UniSTS
GeneMap99-GB4 RH Map5531.72UniSTS
Whitehead-RH Map5441.7UniSTS
NCBI RH Map5889.1UniSTS
RH65516  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh375140,390,919 - 140,391,093UniSTSGRCh37
Build 365140,371,103 - 140,371,277RGDNCBI36
Celera5136,467,698 - 136,467,872RGD
Cytogenetic Map5q31UniSTS
HuRef5135,535,618 - 135,535,792UniSTS
GeneMap99-GB4 RH Map5527.13UniSTS
NCBI RH Map5889.1UniSTS
PCDHAC1__5835  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh375140,308,699 - 140,309,481UniSTSGRCh37
Build 365140,288,883 - 140,289,665RGDNCBI36
Celera5136,385,512 - 136,386,294RGD
HuRef5135,453,434 - 135,454,216UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 1 1 1 3 2 11
Low 433 9 456 23 56 17 244 423 941 30 475 593 9 41 24 1
Below cutoff 1772 1876 1044 402 714 249 3277 1103 2696 257 771 954 154 1140 2116 2

Sequence

Nucleotide Sequences
RefSeq Transcripts NG_000016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NG_050672 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NG_050674 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NG_050675 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NG_050677 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_018898 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_031882 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AA601497 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC004776 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC010223 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF152303 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF152473 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ007608 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AW152471 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC136774 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC136785 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471062 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HY126945 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENST00000253807   ⟹   ENSP00000253807
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl5140,926,299 - 141,012,347 (+)Ensembl
RefSeq Acc Id: ENST00000409700   ⟹   ENSP00000386356
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl5140,926,369 - 140,930,445 (+)Ensembl
RefSeq Acc Id: NM_018898   ⟹   NP_061721
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh385140,926,299 - 141,012,347 (+)NCBI
GRCh375140,306,302 - 140,391,929 (+)RGD
Build 365140,286,486 - 140,372,113 (+)NCBI Archive
Celera5136,383,115 - 136,468,708 (+)RGD
HuRef5135,451,037 - 135,536,628 (+)ENTREZGENE
CHM1_15139,739,496 - 139,825,092 (+)NCBI
T2T-CHM13v2.05141,451,598 - 141,537,634 (+)NCBI
Sequence:
RefSeq Acc Id: NM_031882   ⟹   NP_114088
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh385140,926,717 - 140,929,512 (+)NCBI
GRCh375140,306,302 - 140,391,929 (+)RGD
Build 365140,286,486 - 140,289,569 (+)NCBI Archive
Celera5136,383,115 - 136,468,708 (+)RGD
HuRef5135,451,037 - 135,536,628 (+)ENTREZGENE
CHM1_15139,739,496 - 139,742,291 (+)NCBI
T2T-CHM13v2.05141,452,016 - 141,454,811 (+)NCBI
Sequence:
RefSeq Acc Id: NP_061721   ⟸   NM_018898
- Peptide Label: isoform 1 precursor
- UniProtKB: Q9Y5F5 (UniProtKB/Swiss-Prot),   Q9Y5I5 (UniProtKB/Swiss-Prot),   Q9H158 (UniProtKB/Swiss-Prot),   B2RNA7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_114088   ⟸   NM_031882
- Peptide Label: isoform 2 precursor
- UniProtKB: B2RNA7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSP00000253807   ⟸   ENST00000253807
RefSeq Acc Id: ENSP00000386356   ⟸   ENST00000409700
Protein Domains
Cadherin

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9H158-F1-model_v2 AlphaFold Q9H158 1-963 view protein structure

Promoters
RGD ID:6870916
Promoter ID:EPDNEW_H8623
Type:initiation region
Name:PCDHAC1_3
Description:protocadherin alpha subfamily C, 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H8624  EPDNEW_H8625  
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh385140,926,338 - 140,926,398EPDNEW
RGD ID:6870918
Promoter ID:EPDNEW_H8624
Type:multiple initiation site
Name:PCDHAC1_1
Description:protocadherin alpha subfamily C, 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H8623  EPDNEW_H8625  
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh385140,927,063 - 140,927,123EPDNEW
RGD ID:6870920
Promoter ID:EPDNEW_H8625
Type:initiation region
Name:PCDHAC1_2
Description:protocadherin alpha subfamily C, 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H8623  EPDNEW_H8624  
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh385140,927,735 - 140,927,795EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:8676 AgrOrtholog
COSMIC PCDHAC1 COSMIC
Ensembl Genes ENSG00000248383 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
  ENSG00000291670 UniProtKB/Swiss-Prot
Ensembl Transcript ENST00000253807 ENTREZGENE
  ENST00000253807.3 UniProtKB/Swiss-Prot
  ENST00000409700 ENTREZGENE
  ENST00000409700.4 UniProtKB/Swiss-Prot
  ENST00000708335.1 UniProtKB/Swiss-Prot
  ENST00000708336.1 UniProtKB/Swiss-Prot
Gene3D-CATH Cadherins UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000248383 GTEx
  ENSG00000291670 GTEx
HGNC ID HGNC:8676 ENTREZGENE
Human Proteome Map PCDHAC1 Human Proteome Map
InterPro Cadherin-like_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cadherin-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cadherin_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cadherin_CBD UniProtKB/Swiss-Prot
  Cadherin_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cadherin_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:56135 UniProtKB/Swiss-Prot
NCBI Gene 56135 ENTREZGENE
OMIM 606320 OMIM
PANTHER CADHERIN-87A UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR24028:SF153 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Cadherin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cadherin_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cadherin_C_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cadherin_tail UniProtKB/Swiss-Prot
PharmGKB PA33022 PharmGKB
PRINTS CADHERIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE CADHERIN_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CADHERIN_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART SM00112 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF49313 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt B2RNA7 ENTREZGENE, UniProtKB/TrEMBL
  PCDC1_HUMAN UniProtKB/Swiss-Prot, ENTREZGENE
  Q9Y5F5 ENTREZGENE
  Q9Y5I5 ENTREZGENE
UniProt Secondary Q9Y5F5 UniProtKB/Swiss-Prot
  Q9Y5I5 UniProtKB/Swiss-Prot