RPL22P2 (ribosomal protein L22 pseudogene 2) - Rat Genome Database

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Gene: RPL22P2 (ribosomal protein L22 pseudogene 2) Homo sapiens
Analyze
Symbol: RPL22P2
Name: ribosomal protein L22 pseudogene 2
RGD ID: 1352841
HGNC Page HGNC:19794
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: RPL22_9_1393
Related Functional Gene: RPL22  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381476,886,320 - 76,886,772 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1476,886,377 - 76,886,750 (-)EnsemblGRCh38hg38GRCh38
GRCh371477,352,663 - 77,353,115 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361476,422,281 - 76,422,940 (-)NCBINCBI36Build 36hg18NCBI36
Celera1457,391,237 - 57,391,692 (-)NCBICelera
Cytogenetic Map14q24.3NCBI
HuRef1457,521,062 - 57,521,517 (-)NCBIHuRef
CHM1_11477,290,447 - 77,290,902 (-)NCBICHM1_1
T2T-CHM13v2.01471,096,048 - 71,096,500 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:19123937  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:121
Count of miRNA genes:121
Interacting mature miRNAs:121
Transcripts:ENST00000469811
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High
Medium 7 7 7 5 5 4 3 4 28 2 19 9 4 1 2 2
Low 1850 1967 1178 278 1148 144 3746 1465 2004 267 1244 1371 140 1081 2371 3
Below cutoff 458 838 357 188 481 166 529 622 1438 103 137 182 24 110 370

Sequence


RefSeq Acc Id: ENST00000469811
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1476,886,377 - 76,886,750 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RPL22P2 COSMIC
Ensembl Genes ENSG00000241081 Ensembl, ENTREZGENE
GTEx ENSG00000241081 GTEx
HGNC ID HGNC:19794 ENTREZGENE
Human Proteome Map RPL22P2 Human Proteome Map
NCBI Gene 326292 ENTREZGENE
PharmGKB PA134943215 PharmGKB