ALDH7A1P1 (aldehyde dehydrogenase 7 family member A1 pseudogene 1) - Rat Genome Database

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Gene: ALDH7A1P1 (aldehyde dehydrogenase 7 family member A1 pseudogene 1) Homo sapiens
Analyze
Symbol: ALDH7A1P1
Name: aldehyde dehydrogenase 7 family member A1 pseudogene 1
RGD ID: 1352783
HGNC Page HGNC:878
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: antiquitin-like 1; ATQL1
Related Functional Gene: ALDH7A1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38577,290,184 - 77,291,997 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl577,290,268 - 77,291,800 (+)EnsemblGRCh38hg38GRCh38
GRCh37576,586,009 - 76,587,822 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36576,621,684 - 76,623,499 (+)NCBINCBI36Build 36hg18NCBI36
Celera572,480,239 - 72,482,049 (+)NCBICelera
Cytogenetic Map5q13.3NCBI
HuRef571,792,463 - 71,794,273 (+)NCBIHuRef
CHM1_1576,019,747 - 76,021,557 (+)NCBICHM1_1
T2T-CHM13v2.0577,772,092 - 77,773,905 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:9417906   PMID:16004729  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:82
Count of miRNA genes:80
Interacting mature miRNAs:81
Transcripts:ENST00000510973
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
D5S2464  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37576,587,583 - 76,587,781UniSTSGRCh37
GRCh375125,880,503 - 125,880,702UniSTSGRCh37
Build 365125,908,402 - 125,908,601RGDNCBI36
Celera572,481,813 - 72,482,011RGD
Cytogenetic Map5q14UniSTS
Cytogenetic Map5q13.3UniSTS
Cytogenetic Map5q31UniSTS
HuRef5121,071,206 - 121,071,405UniSTS
HuRef571,794,037 - 71,794,235UniSTS
GeneMap99-GB4 RH Map5370.82UniSTS
Whitehead-RH Map5270.0UniSTS
Whitehead-YAC Contig Map5 UniSTS
NCBI RH Map5363.9UniSTS
RH47147  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37576,587,455 - 76,587,556UniSTSGRCh37
Build 36576,623,211 - 76,623,312RGDNCBI36
Celera572,481,685 - 72,481,786RGD
Cytogenetic Map5q31UniSTS
Cytogenetic Map5q13.3UniSTS
Cytogenetic Map5q14UniSTS
HuRef571,793,909 - 71,794,010UniSTS
GeneMap99-GB4 RH Map5371.12UniSTS
D5S2596  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37576,587,528 - 76,587,670UniSTSGRCh37
GRCh375125,880,615 - 125,882,061UniSTSGRCh37
Build 36576,623,284 - 76,623,426RGDNCBI36
Celera572,481,758 - 72,481,900RGD
Cytogenetic Map5q31UniSTS
Cytogenetic Map5q14UniSTS
Cytogenetic Map5q13.3UniSTS
HuRef571,793,982 - 71,794,124UniSTS
HuRef5121,071,318 - 121,072,780UniSTS
Stanford-G3 RH Map52779.0UniSTS
GeneMap99-G3 RH Map52774.0UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 2 1 1 2 46 1
Low 103 62 385 99 24 95 412 42 360 170 537 503 14 29 110 2
Below cutoff 1894 2016 1168 386 551 238 3388 1562 3135 168 734 979 150 1051 2234 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000510973
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl577,290,268 - 77,291,800 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC ALDH7A1P1 COSMIC
Ensembl Genes ENSG00000251400 Ensembl, ENTREZGENE
GTEx ENSG00000251400 GTEx
HGNC ID HGNC:878 ENTREZGENE
Human Proteome Map ALDH7A1P1 Human Proteome Map
NCBI Gene 541 ENTREZGENE
PharmGKB PA25174 PharmGKB


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-11-24 ALDH7A1P1  aldehyde dehydrogenase 7 family member A1 pseudogene 1    aldehyde dehydrogenase 7 family, member A1 pseudogene 1  Symbol and/or name change 5135510 APPROVED