OR1R1P (olfactory receptor family 1 subfamily R member 1 pseudogene) - Rat Genome Database

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Gene: OR1R1P (olfactory receptor family 1 subfamily R member 1 pseudogene) Homo sapiens
Analyze
Symbol: OR1R1P
Name: olfactory receptor family 1 subfamily R member 1 pseudogene
RGD ID: 1352741
HGNC Page HGNC:8226
Description: Predicted to enable odorant binding activity and olfactory receptor activity. Predicted to be involved in detection of chemical stimulus involved in sensory perception of smell. Predicted to be located in plasma membrane.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AC087498.1; olfactory receptor, family 1, subfamily R, member 1 pseudogene; olfactory receptor, family 1, subfamily R, member 2 pseudogene; olfactory receptor, family 1, subfamily R, member 3 pseudogene; olfactory receptor, family 20, subfamily A, member 1 pseudogene; OR17-01; OR17-1; OR1R2P; OR1R3P; OR20A1P
RGD Orthologs
Mouse
Rat
Bonobo
Dog
Pig
Alliance Genes
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38173,385,930 - 3,386,874 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl173,385,930 - 3,386,874 (+)EnsemblGRCh38hg38GRCh38
GRCh37173,289,224 - 3,290,168 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36173,235,790 - 3,237,017 (+)NCBINCBI36Build 36hg18NCBI36
Celera173,302,848 - 3,303,886 (+)NCBICelera
Cytogenetic Map17p13.3NCBI
HuRef173,181,626 - 3,182,664 (+)NCBIHuRef
CHM1_1173,298,172 - 3,299,200 (+)NCBICHM1_1
T2T-CHM13v2.0173,274,869 - 3,275,813 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
membrane  (IBA,IEA)

Molecular Function

References
Additional References at PubMed
PMID:10673334  


Genomics

Comparative Map Data
OR1R1P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38173,385,930 - 3,386,874 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl173,385,930 - 3,386,874 (+)EnsemblGRCh38hg38GRCh38
GRCh37173,289,224 - 3,290,168 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36173,235,790 - 3,237,017 (+)NCBINCBI36Build 36hg18NCBI36
Celera173,302,848 - 3,303,886 (+)NCBICelera
Cytogenetic Map17p13.3NCBI
HuRef173,181,626 - 3,182,664 (+)NCBIHuRef
CHM1_1173,298,172 - 3,299,200 (+)NCBICHM1_1
T2T-CHM13v2.0173,274,869 - 3,275,813 (+)NCBIT2T-CHM13v2.0
Or1r1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391173,874,488 - 73,875,432 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1173,870,793 - 73,881,233 (-)EnsemblGRCm39 Ensembl
GRCm381173,983,662 - 73,984,606 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1173,979,967 - 73,990,407 (-)EnsemblGRCm38mm10GRCm38
MGSCv371173,797,164 - 73,798,108 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361173,799,857 - 73,800,801 (-)NCBIMGSCv36mm8
Celera1181,517,115 - 81,518,059 (-)NCBICelera
Cytogenetic Map11B4NCBI
cM Map1145.69NCBI
Or1r1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81059,388,805 - 59,389,749 (-)NCBIGRCr8
mRatBN7.21058,890,357 - 58,891,301 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1058,890,357 - 58,891,301 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1063,517,425 - 63,518,369 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01063,023,022 - 63,023,966 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01058,517,579 - 58,518,523 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01060,864,522 - 60,865,466 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1060,864,522 - 60,865,466 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01060,601,363 - 60,602,307 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41061,306,719 - 61,307,663 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11061,320,341 - 61,321,286 (-)NCBI
Celera1057,932,938 - 57,933,882 (-)NCBICelera
Cytogenetic Map10q24NCBI
LOC129394412
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21910,980,391 - 10,981,461 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11712,946,751 - 12,948,495 (+)NCBINHGRI_mPanPan1
OR1R1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1947,301,778 - 47,302,722 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl947,301,778 - 47,302,722 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha946,455,855 - 46,456,799 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0948,137,714 - 48,138,658 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl948,137,714 - 48,138,658 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1946,901,129 - 46,902,073 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0947,201,723 - 47,202,667 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0947,259,181 - 47,260,125 (+)NCBIUU_Cfam_GSD_1.0
LOC100739378
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11249,514,664 - 49,515,608 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21251,437,098 - 51,437,868 (+)NCBISscrofa10.2Sscrofa10.2susScr3


Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 17p13.3-13.2(chr17:2527510-3467165)x1 copy number loss See cases [RCV000053405] Chr17:2527510..3467165 [GRCh38]
Chr17:2430804..3370459 [GRCh37]
Chr17:2377554..3317209 [NCBI36]
Chr17:17p13.3-13.2		 pathogenic
GRCh38/hg38 17p13.3-12(chr17:150732-14764202)x3 copy number gain See cases [RCV000142236] Chr17:150732..14764202 [GRCh38]
Chr17:525..14667519 [GRCh37]
Chr17:525..14608244 [NCBI36]
Chr17:17p13.3-12		 pathogenic
GRCh38/hg38 17p13.3-13.1(chr17:198748-7491129)x3 copy number gain See cases [RCV000134970] Chr17:198748..7491129 [GRCh38]
Chr17:50690..7394448 [GRCh37]
Chr17:48539..7335172 [NCBI36]
Chr17:17p13.3-13.1		 pathogenic
GRCh38/hg38 17p13.3-13.2(chr17:226472-3655099)x1 copy number loss See cases [RCV000135857] Chr17:226472..3655099 [GRCh38]
Chr17:396627..3558393 [GRCh37]
Chr17:76263..3505142 [NCBI36]
Chr17:17p13.3-13.2		 pathogenic
GRCh38/hg38 17p13.3-13.2(chr17:2922729-3436438)x3 copy number gain See cases [RCV000142895] Chr17:2922729..3436438 [GRCh38]
Chr17:2826023..3339732 [GRCh37]
Chr17:2772773..3286482 [NCBI36]
Chr17:17p13.3-13.2		 pathogenic
GRCh38/hg38 17p13.3-13.2(chr17:3102273-3667053)x3 copy number gain See cases [RCV000137331] Chr17:3102273..3667053 [GRCh38]
Chr17:3005567..3570347 [GRCh37]
Chr17:2952317..3517096 [NCBI36]
Chr17:17p13.3-13.2		 likely pathogenic|uncertain significance
GRCh38/hg38 17p13.3-13.2(chr17:1348488-3513273)x3 copy number gain See cases [RCV000137603] Chr17:1348488..3513273 [GRCh38]
Chr17:1251782..3416567 [GRCh37]
Chr17:1198532..3363317 [NCBI36]
Chr17:17p13.3-13.2		 likely pathogenic
GRCh38/hg38 17p13.3-13.2(chr17:237248-4735533)x1 copy number loss See cases [RCV000141559] Chr17:237248..4735533 [GRCh38]
Chr17:396627..4638828 [GRCh37]
Chr17:87039..4585577 [NCBI36]
Chr17:17p13.3-13.2		 pathogenic
GRCh38/hg38 17p13.3-13.2(chr17:150732-5935377)x1 copy number loss See cases [RCV000141658] Chr17:150732..5935377 [GRCh38]
Chr17:525..5838697 [GRCh37]
Chr17:525..5779421 [NCBI36]
Chr17:17p13.3-13.2		 pathogenic
GRCh38/hg38 17p13.3-13.2(chr17:3168370-3852982)x3 copy number gain See cases [RCV000143610] Chr17:3168370..3852982 [GRCh38]
Chr17:3071664..3756276 [GRCh37]
Chr17:3018414..3703025 [NCBI36]
Chr17:17p13.3-13.2		 likely benign|uncertain significance
GRCh38/hg38 17p13.3-13.2(chr17:2357067-4328426)x3 copy number gain See cases [RCV000052456] Chr17:2357067..4328426 [GRCh38]
Chr17:2260361..4231721 [GRCh37]
Chr17:2207111..4178470 [NCBI36]
Chr17:17p13.3-13.2		 pathogenic
GRCh38/hg38 17p13.3-13.2(chr17:3187406-3880628)x3 copy number gain See cases [RCV000142793] Chr17:3187406..3880628 [GRCh38]
Chr17:3090700..3783922 [GRCh37]
Chr17:3037450..3730671 [NCBI36]
Chr17:17p13.3-13.2		 uncertain significance
GRCh38/hg38 17p13.3-13.1(chr17:162016-7697012)x1 copy number loss See cases [RCV000138214] Chr17:162016..7697012 [GRCh38]
Chr17:45835..7600330 [GRCh37]
Chr17:11807..7541055 [NCBI36]
Chr17:17p13.3-13.1		 pathogenic
GRCh38/hg38 17p13.3-12(chr17:162016-12343901)x3 copy number gain See cases [RCV000138531] Chr17:162016..12343901 [GRCh38]
Chr17:45835..12247218 [GRCh37]
Chr17:11807..12187943 [NCBI36]
Chr17:17p13.3-12		 pathogenic
GRCh38/hg38 17p13.3-13.2(chr17:193307-5652222)x1 copy number loss See cases [RCV000053384] Chr17:193307..5652222 [GRCh38]
Chr17:45835..5555542 [GRCh37]
Chr17:43098..5496266 [NCBI36]
Chr17:17p13.3-13.2		 pathogenic
GRCh38/hg38 17p13.3-13.2(chr17:3036729-3684667)x3 copy number gain See cases [RCV000053972] Chr17:3036729..3684667 [GRCh38]
Chr17:2940023..3587961 [GRCh37]
Chr17:2886773..3534710 [NCBI36]
Chr17:17p13.3-13.2		 uncertain significance
GRCh38/hg38 17p13.3-13.2(chr17:3168370-3862518)x3 copy number gain See cases [RCV000142062] Chr17:3168370..3862518 [GRCh38]
Chr17:3071664..3765812 [GRCh37]
Chr17:3018414..3712561 [NCBI36]
Chr17:17p13.3-13.2		 uncertain significance
GRCh38/hg38 17p13.3-13.1(chr17:162088-6959050)x1 copy number loss See cases [RCV000134135] Chr17:162088..6959050 [GRCh38]
Chr17:45835..6862369 [GRCh37]
Chr17:11879..6803093 [NCBI36]
Chr17:17p13.3-13.1		 pathogenic
GRCh38/hg38 17p13.3-13.2(chr17:198748-4265640)x1 copy number loss See cases [RCV000142440] Chr17:198748..4265640 [GRCh38]
Chr17:50690..4168935 [GRCh37]
Chr17:48539..4115684 [NCBI36]
Chr17:17p13.3-13.2		 pathogenic
GRCh38/hg38 17p13.3-13.2(chr17:2062429-4141883)x3 copy number gain See cases [RCV000139738] Chr17:2062429..4141883 [GRCh38]
Chr17:1965723..4045177 [GRCh37]
Chr17:1912473..3991926 [NCBI36]
Chr17:17p13.3-13.2		 pathogenic
GRCh38/hg38 17p13.3-13.2(chr17:2062380-5258340)x1 copy number loss See cases [RCV000133721] Chr17:2062380..5258340 [GRCh38]
Chr17:1965674..5161635 [GRCh37]
Chr17:1912424..5102359 [NCBI36]
Chr17:17p13.3-13.2		 pathogenic
GRCh38/hg38 17p13.3-13.2(chr17:3155468-3543868)x1 copy number loss See cases [RCV000133921] Chr17:3155468..3543868 [GRCh38]
Chr17:3058762..3447162 [GRCh37]
Chr17:3005512..3393912 [NCBI36]
Chr17:17p13.3-13.2		 benign
GRCh38/hg38 17p13.3-12(chr17:165730-11404096)x3 copy number gain Chromosome 17p13.3 duplication syndrome [RCV003327726] Chr17:165730..11404096 [GRCh38]
Chr17:17p13.3-12		 pathogenic
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:348
Count of miRNA genes:178
Interacting mature miRNAs:190
Transcripts:ENST00000322899, ENST00000572493
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENST00000572493   ⟹   ENSP00000492889
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl173,385,930 - 3,386,874 (+)Ensembl
RefSeq Acc Id: NM_001396056   ⟹   NP_001382985
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38173,385,930 - 3,386,874 (+)NCBI
T2T-CHM13v2.0173,274,869 - 3,275,813 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001382985 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAF03263 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSP00000492889
  ENSP00000492889.1
Reference Protein Sequences
RefSeq Acc Id: NP_001382985   ⟸   NM_001396056
- UniProtKB: A0A286YEU6 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSP00000492889   ⟸   ENST00000572493
Protein Domains
G-protein coupled receptors family 1 profile

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A286YEU6-F1-model_v2 AlphaFold A0A286YEU6 1-314 view protein structure


Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:8226 AgrOrtholog
COSMIC OR1R1P COSMIC
Ensembl Genes ENSG00000180042 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENST00000572493 ENTREZGENE
  ENST00000572493.2 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
GTEx ENSG00000180042 GTEx
HGNC ID HGNC:8226 ENTREZGENE
Human Proteome Map OR1R1P Human Proteome Map
InterPro GPCR_Rhodpsn_7TM UniProtKB/TrEMBL
  Olfact_rcpt UniProtKB/TrEMBL
NCBI Gene 9596 ENTREZGENE
PANTHER OLFACTORY RECEPTOR UniProtKB/TrEMBL
  OLFACTORY RECEPTOR 1L6-LIKE UniProtKB/TrEMBL
Pfam 7tm_4 UniProtKB/TrEMBL
PharmGKB PA32095 PharmGKB
PRINTS OLFACTORYR UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt A0A286YEU6 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-07 OR1R1P  olfactory receptor family 1 subfamily R member 1 pseudogene  AC087498.1  olfactory receptor, family 1, subfamily R, member 1 pseudogene  Data merged from RGD:16550868 737654 PROVISIONAL
2015-12-15 OR1R1P  olfactory receptor family 1 subfamily R member 1 pseudogene  OR1R1P  olfactory receptor, family 1, subfamily R, member 1 pseudogene  Symbol and/or name change 5135510 APPROVED