KRT18P4 (keratin 18 pseudogene 4) - Rat Genome Database

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Gene: KRT18P4 (keratin 18 pseudogene 4) Homo sapiens
Analyze
Symbol: KRT18P4
Name: keratin 18 pseudogene 4
RGD ID: 1351868
HGNC Page HGNC:16604
Description: INTERACTS WITH aristolochic acid A
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: dJ963K23.1
Related Functional Gene: KRT18  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382049,956,699 - 49,958,087 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2049,956,745 - 49,958,032 (+)EnsemblGRCh38hg38GRCh38
GRCh372048,573,236 - 48,574,624 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362048,006,689 - 48,007,976 (+)NCBINCBI36Build 36hg18NCBI36
Celera2045,277,804 - 45,279,190 (+)NCBICelera
Cytogenetic Map20q13.13NCBI
HuRef2045,321,645 - 45,323,031 (+)NCBIHuRef
CHM1_12048,477,785 - 48,479,173 (+)NCBICHM1_1
T2T-CHM13v2.02051,726,171 - 51,727,559 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:133
Count of miRNA genes:130
Interacting mature miRNAs:133
Transcripts:ENST00000422599
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium
Low 1032 878 1007 230 549 196 1549 604 1445 171 1065 1146 42 549 1060 3
Below cutoff 1372 1996 687 378 1126 256 2702 1548 2209 225 369 444 126 643 1672 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000422599
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2049,956,745 - 49,958,032 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC KRT18P4 COSMIC
Ensembl Genes ENSG00000229222 Ensembl, ENTREZGENE
GTEx ENSG00000229222 GTEx
HGNC ID HGNC:16604 ENTREZGENE
Human Proteome Map KRT18P4 Human Proteome Map
NCBI Gene 391256 ENTREZGENE
PharmGKB PA30224 PharmGKB