ECHDC3 (enoyl-CoA hydratase domain containing 3) - Rat Genome Database

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Gene: ECHDC3 (enoyl-CoA hydratase domain containing 3) Homo sapiens
Analyze
Symbol: ECHDC3
Name: enoyl-CoA hydratase domain containing 3
RGD ID: 1351756
HGNC Page HGNC:23489
Description: Predicted to enable enoyl-CoA hydratase activity. Involved in positive regulation of cellular response to insulin stimulus. Predicted to be active in mitochondrion.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: enoyl CoA hydratase domain containing 3; enoyl Coenzyme A hydratase domain containing 3; enoyl-CoA hydratase domain-containing protein 3, mitochondrial; FLJ20909; testis tissue sperm-binding protein Li 76m
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381011,742,382 - 11,764,070 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1011,742,366 - 11,764,070 (+)EnsemblGRCh38hg38GRCh38
GRCh371011,784,381 - 11,806,069 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361011,824,362 - 11,846,071 (+)NCBINCBI36Build 36hg18NCBI36
Build 341011,824,388 - 11,846,070NCBI
Celera1011,712,956 - 11,734,651 (+)NCBICelera
Cytogenetic Map10p14NCBI
HuRef1011,702,272 - 11,723,888 (+)NCBIHuRef
CHM1_11011,784,346 - 11,806,050 (+)NCBICHM1_1
T2T-CHM13v2.01011,753,847 - 11,775,531 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
mitochondrion  (IBA,IEA,ISS)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
3. Transcriptomic characteristics of bronchoalveolar lavage fluid and peripheral blood mononuclear cells in COVID-19 patients. Xiong Y, etal., Emerg Microbes Infect. 2020 Dec;9(1):761-770. doi: 10.1080/22221751.2020.1747363.
Additional References at PubMed
PMID:8125298   PMID:15342556   PMID:20877624   PMID:21873635   PMID:24162737   PMID:27586541   PMID:28183528   PMID:31010960   PMID:31586073   PMID:33845483   PMID:33961781   PMID:35831314  
PMID:38070593  


Genomics

Comparative Map Data
ECHDC3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381011,742,382 - 11,764,070 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1011,742,366 - 11,764,070 (+)EnsemblGRCh38hg38GRCh38
GRCh371011,784,381 - 11,806,069 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361011,824,362 - 11,846,071 (+)NCBINCBI36Build 36hg18NCBI36
Build 341011,824,388 - 11,846,070NCBI
Celera1011,712,956 - 11,734,651 (+)NCBICelera
Cytogenetic Map10p14NCBI
HuRef1011,702,272 - 11,723,888 (+)NCBIHuRef
CHM1_11011,784,346 - 11,806,050 (+)NCBICHM1_1
T2T-CHM13v2.01011,753,847 - 11,775,531 (+)NCBIT2T-CHM13v2.0
Echdc3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3926,193,276 - 6,217,805 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl26,193,276 - 6,217,844 (-)EnsemblGRCm39 Ensembl
GRCm3826,188,465 - 6,212,994 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl26,188,465 - 6,213,033 (-)EnsemblGRCm38mm10GRCm38
MGSCv3726,109,511 - 6,134,040 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3626,105,737 - 6,130,266 (-)NCBIMGSCv36mm8
Celera26,128,879 - 6,152,212 (-)NCBICelera
Cytogenetic Map2A1NCBI
cM Map23.62NCBI
Echdc3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81776,980,112 - 77,002,934 (+)NCBIGRCr8
mRatBN7.21772,070,697 - 72,093,519 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1772,070,668 - 72,093,516 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1775,579,524 - 75,602,317 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01779,400,971 - 79,423,758 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01773,451,254 - 73,474,041 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01776,002,304 - 76,022,813 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1776,002,275 - 76,022,813 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01777,652,353 - 77,675,480 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1771,533,948 - 71,548,547 (+)NCBICelera
Cytogenetic Map17q12.3NCBI
Echdc3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542127,712,528 - 27,730,623 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542127,712,527 - 27,731,141 (+)NCBIChiLan1.0ChiLan1.0
ECHDC3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2824,266,173 - 24,287,832 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11024,271,505 - 24,293,164 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01011,746,922 - 11,768,609 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11011,727,762 - 11,750,405 (+)NCBIpanpan1.1PanPan1.1panPan2
ECHDC3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1224,600,563 - 24,619,948 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl224,599,709 - 24,619,958 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha221,630,789 - 21,650,175 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0224,971,716 - 24,991,106 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl224,967,867 - 24,991,070 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1222,097,893 - 22,117,277 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0222,941,087 - 22,960,455 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0223,656,058 - 23,675,458 (-)NCBIUU_Cfam_GSD_1.0
Echdc3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934427,343,793 - 27,365,405 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364843,507,881 - 3,530,652 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364843,508,235 - 3,530,593 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ECHDC3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1060,117,433 - 60,138,588 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11060,117,425 - 60,138,662 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21065,789,470 - 65,810,796 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ECHDC3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1911,791,645 - 11,814,271 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl911,791,662 - 11,814,462 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605117,294,048 - 17,316,692 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Echdc3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247756,930,693 - 6,959,970 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247756,930,762 - 6,956,295 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ECHDC3
13 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 10p15.3-13(chr10:90421-15569528)x1 copy number loss Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052496]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052496]|See cases [RCV000052496] Chr10:90421..15569528 [GRCh38]
Chr10:224406..15611527 [GRCh37]
Chr10:126361..15651533 [NCBI36]
Chr10:10p15.3-13		 pathogenic
GRCh38/hg38 10p15.1-13(chr10:4802753-16823491)x1 copy number loss See cases [RCV000052500] Chr10:4802753..16823491 [GRCh38]
Chr10:4844945..16865490 [GRCh37]
Chr10:4834945..16905496 [NCBI36]
Chr10:10p15.1-13		 pathogenic
GRCh38/hg38 10p15.3-12.31(chr10:69261-19184047)x3 copy number gain See cases [RCV000053507] Chr10:69261..19184047 [GRCh38]
Chr10:224406..19472976 [GRCh37]
Chr10:105201..19512982 [NCBI36]
Chr10:10p15.3-12.31		 pathogenic
GRCh38/hg38 10p15.3-12.2(chr10:90221-22567425)x3 copy number gain See cases [RCV000053508] Chr10:90221..22567425 [GRCh38]
Chr10:224406..22856354 [GRCh37]
Chr10:126161..22896360 [NCBI36]
Chr10:10p15.3-12.2		 pathogenic
GRCh38/hg38 10p15.3-12.1(chr10:90421-29058318)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053512]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053512]|See cases [RCV000053512] Chr10:90421..29058318 [GRCh38]
Chr10:224406..29347247 [GRCh37]
Chr10:126361..29387253 [NCBI36]
Chr10:10p15.3-12.1		 pathogenic
GRCh38/hg38 10p15.3-13(chr10:73856-12815915)x3 copy number gain See cases [RCV000135340] Chr10:73856..12815915 [GRCh38]
Chr10:119796..12857914 [GRCh37]
Chr10:109796..12897920 [NCBI36]
Chr10:10p15.3-13		 pathogenic
GRCh38/hg38 10p14-13(chr10:11712990-12319959)x3 copy number gain See cases [RCV000136570] Chr10:11712990..12319959 [GRCh38]
Chr10:11754989..12361958 [GRCh37]
Chr10:11794995..12401964 [NCBI36]
Chr10:10p14-13		 likely benign|uncertain significance
GRCh38/hg38 10p14-12.31(chr10:7428770-21587752)x1 copy number loss See cases [RCV000137307] Chr10:7428770..21587752 [GRCh38]
Chr10:7470732..21876681 [GRCh37]
Chr10:7510738..21916687 [NCBI36]
Chr10:10p14-12.31		 pathogenic|uncertain significance
GRCh38/hg38 10p15.3-13(chr10:70478-15373336)x3 copy number gain See cases [RCV000137384] Chr10:70478..15373336 [GRCh38]
Chr10:224406..15415335 [GRCh37]
Chr10:106418..15455341 [NCBI36]
Chr10:10p15.3-13		 uncertain significance
GRCh38/hg38 10p14(chr10:10940950-11775908)x1 copy number loss See cases [RCV000138064] Chr10:10940950..11775908 [GRCh38]
Chr10:10982913..11817907 [GRCh37]
Chr10:11022919..11857913 [NCBI36]
Chr10:10p14		 uncertain significance
GRCh38/hg38 10p15.3-12.1(chr10:90205-26339978)x3 copy number gain See cases [RCV000138428] Chr10:90205..26339978 [GRCh38]
Chr10:224406..26628907 [GRCh37]
Chr10:126145..26668913 [NCBI36]
Chr10:10p15.3-12.1		 pathogenic
GRCh38/hg38 10p14(chr10:11738467-12180308)x1 copy number loss See cases [RCV000138322] Chr10:11738467..12180308 [GRCh38]
Chr10:11780466..12222307 [GRCh37]
Chr10:11820472..12262313 [NCBI36]
Chr10:10p14		 uncertain significance
GRCh38/hg38 10p15.3-13(chr10:70478-13736564)x1 copy number loss See cases [RCV000138960] Chr10:70478..13736564 [GRCh38]
Chr10:224406..13778564 [GRCh37]
Chr10:106418..13818570 [NCBI36]
Chr10:10p15.3-13		 pathogenic
GRCh38/hg38 10p15.1-q11.22(chr10:4604734-48074662)x3 copy number gain See cases [RCV000141497] Chr10:4604734..48074662 [GRCh38]
Chr10:4646926..47531169 [GRCh37]
Chr10:4636926..47125152 [NCBI36]
Chr10:10p15.1-q11.22		 benign
GRCh38/hg38 10p15.3-13(chr10:54086-13205916)x3 copy number gain See cases [RCV000142292] Chr10:54086..13205916 [GRCh38]
Chr10:100026..13247916 [GRCh37]
Chr10:90026..13287922 [NCBI36]
Chr10:10p15.3-13		 pathogenic
GRCh38/hg38 10p15.3-12.31(chr10:54086-19336980)x1 copy number loss See cases [RCV000143703] Chr10:54086..19336980 [GRCh38]
Chr10:100026..19625909 [GRCh37]
Chr10:90026..19665915 [NCBI36]
Chr10:10p15.3-12.31		 pathogenic|likely pathogenic
GRCh37/hg19 10p14-13(chr10:9180833-12424863)x3 copy number gain See cases [RCV000446118] Chr10:9180833..12424863 [GRCh37]
Chr10:10p14-13		 uncertain significance
GRCh37/hg19 10p15.3-11.23(chr10:100026-30278548)x3 copy number gain See cases [RCV000447131] Chr10:100026..30278548 [GRCh37]
Chr10:10p15.3-11.23		 pathogenic
GRCh37/hg19 10p15.3-q26.3(chr10:93297-135378918)x3 copy number gain See cases [RCV000448750] Chr10:93297..135378918 [GRCh37]
Chr10:10p15.3-q26.3		 pathogenic
GRCh37/hg19 10p15.3-q26.3(chr10:100027-135427143) copy number gain See cases [RCV000511389] Chr10:100027..135427143 [GRCh37]
Chr10:10p15.3-q26.3		 pathogenic|uncertain significance
GRCh37/hg19 10p15.3-q11.23(chr10:100026-50961640)x3 copy number gain See cases [RCV000510893] Chr10:100026..50961640 [GRCh37]
Chr10:10p15.3-q11.23		 pathogenic
GRCh37/hg19 10p15.3-q26.3(chr10:100027-135427143)x3 copy number gain See cases [RCV000510861] Chr10:100027..135427143 [GRCh37]
Chr10:10p15.3-q26.3		 pathogenic
NM_024693.5(ECHDC3):c.517G>A (p.Ala173Thr) single nucleotide variant Inborn genetic diseases [RCV003253782] Chr10:11755534 [GRCh38]
Chr10:11797533 [GRCh37]
Chr10:10p14		 uncertain significance
GRCh37/hg19 10p15.3-13(chr10:100026-12842179)x1 copy number loss See cases [RCV000512541] Chr10:100026..12842179 [GRCh37]
Chr10:10p15.3-13		 pathogenic
Single allele deletion Hypoparathyroidism, deafness, renal disease syndrome [RCV000735901] Chr10:4689760..19120882 [GRCh37]
Chr10:10p15.1-12.31		 pathogenic
GRCh37/hg19 10p15.3-13(chr10:69083-12887271)x3 copy number gain not provided [RCV000749463] Chr10:69083..12887271 [GRCh37]
Chr10:10p15.3-13		 pathogenic
GRCh37/hg19 10p15.3-q26.3(chr10:73232-135524321)x3 copy number gain not provided [RCV000749464] Chr10:73232..135524321 [GRCh37]
Chr10:10p15.3-q26.3		 pathogenic
GRCh37/hg19 10p15.3-q26.3(chr10:98087-135477883)x3 copy number gain not provided [RCV000749465] Chr10:98087..135477883 [GRCh37]
Chr10:10p15.3-q26.3		 pathogenic
GRCh37/hg19 10p15.3-13(chr10:100026-15273144)x3 copy number gain not provided [RCV000848062] Chr10:100026..15273144 [GRCh37]
Chr10:10p15.3-13		 pathogenic
GRCh37/hg19 10p14-13(chr10:11435205-12314999)x1 copy number loss not provided [RCV000847381] Chr10:11435205..12314999 [GRCh37]
Chr10:10p14-13		 uncertain significance
GRCh37/hg19 10p15.3-13(chr10:100026-15273144)x3 copy number gain not provided [RCV000848090] Chr10:100026..15273144 [GRCh37]
Chr10:10p15.3-13		 pathogenic
GRCh37/hg19 10p14-13(chr10:9137489-17227168) copy number loss Neurodevelopmental delay [RCV001352639] Chr10:9137489..17227168 [GRCh37]
Chr10:10p14-13		 pathogenic
GRCh37/hg19 10p15.1-11.21(chr10:6273934-34732521) copy number gain not specified [RCV002052863] Chr10:6273934..34732521 [GRCh37]
Chr10:10p15.1-11.21		 pathogenic
GRCh37/hg19 10p15.3-q11.22(chr10:135655-47688677)x4 copy number gain Mosaic supernumerary isodicentric chromosome 10 [RCV001825164] Chr10:135655..47688677 [GRCh37]
Chr10:10p15.3-q11.22		 not provided
NM_024693.5(ECHDC3):c.536T>C (p.Val179Ala) single nucleotide variant Inborn genetic diseases [RCV003284500] Chr10:11755553 [GRCh38]
Chr10:11797552 [GRCh37]
Chr10:10p14		 uncertain significance
NM_024693.5(ECHDC3):c.502G>A (p.Asp168Asn) single nucleotide variant Inborn genetic diseases [RCV002749567] Chr10:11755519 [GRCh38]
Chr10:11797518 [GRCh37]
Chr10:10p14		 uncertain significance
GRCh37/hg19 10p14(chr10:11713298-11897052)x1 copy number loss not provided [RCV002474640] Chr10:11713298..11897052 [GRCh37]
Chr10:10p14		 uncertain significance
GRCh37/hg19 10p15.3-13(chr10:100027-12648149)x3 copy number gain not provided [RCV002472393] Chr10:100027..12648149 [GRCh37]
Chr10:10p15.3-13		 uncertain significance
NM_024693.5(ECHDC3):c.265A>G (p.Asn89Asp) single nucleotide variant Inborn genetic diseases [RCV002779478] Chr10:11747443 [GRCh38]
Chr10:11789442 [GRCh37]
Chr10:10p14		 uncertain significance
NM_024693.5(ECHDC3):c.514T>G (p.Phe172Val) single nucleotide variant Inborn genetic diseases [RCV002818887] Chr10:11755531 [GRCh38]
Chr10:11797530 [GRCh37]
Chr10:10p14		 uncertain significance
NM_024693.5(ECHDC3):c.23G>A (p.Arg8Gln) single nucleotide variant Inborn genetic diseases [RCV002924653] Chr10:11742599 [GRCh38]
Chr10:11784598 [GRCh37]
Chr10:10p14		 uncertain significance
NM_024693.5(ECHDC3):c.46A>G (p.Met16Val) single nucleotide variant Inborn genetic diseases [RCV002941857] Chr10:11742622 [GRCh38]
Chr10:11784621 [GRCh37]
Chr10:10p14		 uncertain significance
NM_024693.5(ECHDC3):c.164G>C (p.Gly55Ala) single nucleotide variant Inborn genetic diseases [RCV002963482] Chr10:11742740 [GRCh38]
Chr10:11784739 [GRCh37]
Chr10:10p14		 uncertain significance
NM_024693.5(ECHDC3):c.289T>G (p.Ser97Ala) single nucleotide variant Inborn genetic diseases [RCV003181213] Chr10:11747467 [GRCh38]
Chr10:11789466 [GRCh37]
Chr10:10p14		 uncertain significance
NM_024693.5(ECHDC3):c.166A>T (p.Ile56Leu) single nucleotide variant Inborn genetic diseases [RCV003216247] Chr10:11742742 [GRCh38]
Chr10:11784741 [GRCh37]
Chr10:10p14		 uncertain significance
NM_024693.5(ECHDC3):c.314C>T (p.Ser105Phe) single nucleotide variant Inborn genetic diseases [RCV003219951] Chr10:11749516 [GRCh38]
Chr10:11791515 [GRCh37]
Chr10:10p14		 uncertain significance
GRCh37/hg19 10p14-q26.3(chr10:11138692-135427143) copy number gain Distal trisomy 10q [RCV003319593] Chr10:11138692..135427143 [GRCh37]
Chr10:10p14-q26.3		 pathogenic
GRCh37/hg19 10p14-13(chr10:10175327-13529362)x3 copy number gain not provided [RCV003484791] Chr10:10175327..13529362 [GRCh37]
Chr10:10p14-13		 uncertain significance
GRCh37/hg19 10p14(chr10:10296118-11974769)x1 copy number loss not specified [RCV003986863] Chr10:10296118..11974769 [GRCh37]
Chr10:10p14		 uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1226
Count of miRNA genes:700
Interacting mature miRNAs:823
Transcripts:ENST00000379215, ENST00000420401, ENST00000422887, ENST00000495787, ENST00000496136
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
SHGC-30300  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371011,799,738 - 11,799,875UniSTSGRCh37
Build 361011,839,744 - 11,839,881RGDNCBI36
Celera1011,728,326 - 11,728,463RGD
Cytogenetic Map10p14UniSTS
HuRef1011,717,561 - 11,717,698UniSTS
Stanford-G3 RH Map10546.0UniSTS
GeneMap99-GB4 RH Map1095.04UniSTS
Whitehead-RH Map1087.1UniSTS
NCBI RH Map10188.3UniSTS
GeneMap99-G3 RH Map10546.0UniSTS
RH41844  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371011,805,897 - 11,806,041UniSTSGRCh37
Build 361011,845,903 - 11,846,047RGDNCBI36
Celera1011,734,483 - 11,734,627RGD
Cytogenetic Map10p14UniSTS
HuRef1011,723,720 - 11,723,864UniSTS
RH98611  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371011,805,796 - 11,805,932UniSTSGRCh37
Build 361011,845,802 - 11,845,938RGDNCBI36
Celera1011,734,382 - 11,734,518RGD
Cytogenetic Map10p14UniSTS
HuRef1011,723,618 - 11,723,755UniSTS
GeneMap99-GB4 RH Map1095.14UniSTS
RH123820  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371011,802,417 - 11,802,647UniSTSGRCh37
Build 361011,842,423 - 11,842,653RGDNCBI36
Celera1011,731,005 - 11,731,235RGD
Cytogenetic Map10p14UniSTS
HuRef1011,720,240 - 11,720,470UniSTS
TNG Radiation Hybrid Map106393.0UniSTS
D1S1423  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map10p12.1UniSTS
Cytogenetic Map10p12.1-p11.2UniSTS
Cytogenetic Map9q34.13UniSTS
Cytogenetic Map16q22.1UniSTS
Cytogenetic Map21q22.2UniSTS
Cytogenetic Map3p24.2UniSTS
Cytogenetic Map9q32UniSTS
Cytogenetic Map1q24UniSTS
Cytogenetic Map1q21UniSTS
Cytogenetic Map1p36.33UniSTS
Cytogenetic Map7p15.2UniSTS
Cytogenetic Map6p21UniSTS
Cytogenetic Map5q31UniSTS
Cytogenetic Map6p22.3-p21.32UniSTS
Cytogenetic Map6q22.33UniSTS
Cytogenetic Map3q29UniSTS
Cytogenetic Map17p11.2UniSTS
Cytogenetic Map19q13.3UniSTS
Cytogenetic Map1p36.13UniSTS
Cytogenetic Map5q33.3UniSTS
Cytogenetic Map22q11.22UniSTS
Cytogenetic Map11q13.2-q13.3UniSTS
Cytogenetic Map3q22-q24UniSTS
Cytogenetic Map8p21.3UniSTS
Cytogenetic Map7q32UniSTS
Cytogenetic Map1p32.3UniSTS
Cytogenetic Map19p13.12UniSTS
Cytogenetic Map4q21.1UniSTS
Cytogenetic Map12q13.13UniSTS
Cytogenetic Map7q11.2UniSTS
Cytogenetic Map1p22.1UniSTS
Cytogenetic Map2q32UniSTS
Cytogenetic MapXq13.1UniSTS
Cytogenetic Map9q12UniSTS
Cytogenetic Map3q26.2UniSTS
Cytogenetic Map22q11.21UniSTS
Cytogenetic Map10q23-q24UniSTS
Cytogenetic Map17q12UniSTS
Cytogenetic Map1p36.21UniSTS
Cytogenetic Map19p13.2UniSTS
Cytogenetic Map16q24.3UniSTS
Cytogenetic Map9q34.3UniSTS
Cytogenetic Map4p14UniSTS
Cytogenetic Map2p12UniSTS
Cytogenetic Map16p11.2UniSTS
Cytogenetic Map3q23UniSTS
Cytogenetic Map18q22.1UniSTS
Cytogenetic Map13q12UniSTS
Cytogenetic Map10p14-p13UniSTS
Cytogenetic Map12p13.31UniSTS
Cytogenetic Map14q24.3UniSTS
Cytogenetic Map22q13.2UniSTS
Cytogenetic Map19q13.11UniSTS
Cytogenetic Map11q23-q24UniSTS
Cytogenetic Map11q13.1UniSTS
Cytogenetic Map12q24.31UniSTS
Cytogenetic Map17q25UniSTS
Cytogenetic Map16q24.1UniSTS
Cytogenetic Map5q23.3UniSTS
Cytogenetic Map19q13.43UniSTS
Cytogenetic Map17q11.2UniSTS
Cytogenetic Map20q13.12UniSTS
Cytogenetic MapXp11.23UniSTS
Cytogenetic Map19q13.42UniSTS
Cytogenetic Map16q13UniSTS
Cytogenetic Map11q25UniSTS
Cytogenetic Map22cen-q12.3UniSTS
Cytogenetic Map10p13UniSTS
Cytogenetic Map2p11.2UniSTS
Cytogenetic Map15q11.2-q21.3UniSTS
Cytogenetic Map1p21.2UniSTS
Cytogenetic Map19p13UniSTS
Cytogenetic Map7q21.13UniSTS
Cytogenetic Map7q31.1UniSTS
Cytogenetic Map17p13.3UniSTS
Cytogenetic Map1p35.1UniSTS
Cytogenetic Map16q24UniSTS
Cytogenetic Map3q25UniSTS
Cytogenetic Map2q24.2UniSTS
Cytogenetic Map1p31.3UniSTS
Cytogenetic Map14q31.1UniSTS
Cytogenetic Map22q13.1UniSTS
Cytogenetic Map20q13.31UniSTS
Cytogenetic Map19p13.3UniSTS
Cytogenetic Map6p12.1UniSTS
Cytogenetic Map6q25.3UniSTS
Cytogenetic Map1q32.1UniSTS
Cytogenetic Map11q24.2UniSTS
Cytogenetic Map10p15.1UniSTS
Cytogenetic Map2p13.1UniSTS
Cytogenetic Map19q13.12UniSTS
Cytogenetic Map12p13.32UniSTS
Cytogenetic Map4q35.1UniSTS
Cytogenetic Map2p13.3UniSTS
Cytogenetic Map1p22UniSTS
Cytogenetic Map2q14UniSTS
Cytogenetic Map4q12UniSTS
Cytogenetic Map16p13.3UniSTS
Cytogenetic Map14q32.33UniSTS
Cytogenetic Map1p36.1UniSTS
Cytogenetic Map8p11.21UniSTS
Cytogenetic MapXq26.3UniSTS
Cytogenetic Map8q24.11UniSTS
Cytogenetic Map9q22.31UniSTS
Cytogenetic Map7q11.23UniSTS
Cytogenetic Map2p15UniSTS
Cytogenetic Map5q31.1UniSTS
Cytogenetic Map8q24.13UniSTS
Cytogenetic Map17p13UniSTS
Cytogenetic Map8p11.22UniSTS
Cytogenetic Map4q28UniSTS
Cytogenetic Map15q24.1UniSTS
Cytogenetic Map1q41-q42UniSTS
Cytogenetic Map10q22UniSTS
Cytogenetic Map5q35.3UniSTS
Cytogenetic Map20q11.21UniSTS
Cytogenetic Map8q24.3UniSTS
Cytogenetic Map12p13.1-p12.3UniSTS
Cytogenetic Map6p21.33UniSTS
Cytogenetic Map22q13.33UniSTS
Cytogenetic Map19p12UniSTS
Cytogenetic Map1p13.1UniSTS
Cytogenetic Map7q22.1UniSTS
Cytogenetic Map14q12UniSTS
Cytogenetic Map19q13.32UniSTS
Cytogenetic Map11q13.2UniSTS
Cytogenetic Map15q22.31UniSTS
Cytogenetic Map5q12.3UniSTS
Cytogenetic Map7q33UniSTS
Cytogenetic Map17q21.2UniSTS
Cytogenetic Map4q23UniSTS
Cytogenetic Map12q13.12UniSTS
Cytogenetic Map18p11.21UniSTS
Cytogenetic Map10q26.11UniSTS
Cytogenetic Map14q32.12UniSTS
Cytogenetic Map11q24.1UniSTS
Cytogenetic Map18q23UniSTS
Cytogenetic Map2q31.1UniSTS
Cytogenetic Map18p11.31UniSTS
Cytogenetic Map2q24.3UniSTS
Cytogenetic Map11q23UniSTS
Cytogenetic Map17q21.31UniSTS
Cytogenetic Map13q34UniSTS
Cytogenetic Map1p34.3UniSTS
Cytogenetic Map10p14UniSTS
Cytogenetic Map15q22.2UniSTS
Cytogenetic Map17q25.1UniSTS
Cytogenetic Map5q32UniSTS
Cytogenetic Map4p16.3UniSTS
Cytogenetic Map12q23.2UniSTS
Cytogenetic Map11q12.3UniSTS
Cytogenetic Map16q12.2UniSTS
Cytogenetic Map9q22.2UniSTS
Cytogenetic Map1q21.3UniSTS
Cytogenetic Map1p35.3UniSTS
Cytogenetic Map19q13.2UniSTS
Cytogenetic Map11p15.5UniSTS
Cytogenetic Map7q22UniSTS
Cytogenetic Map18p11.31-p11.21UniSTS
Cytogenetic Map3p25.3UniSTS
Cytogenetic Map3q13UniSTS
Cytogenetic Map21q22.3UniSTS
Cytogenetic Map1q43UniSTS
Cytogenetic Map19p13.11UniSTS
Cytogenetic Map19q13.41UniSTS
Cytogenetic Map7p21.2UniSTS
Cytogenetic Map12q21.1UniSTS
Cytogenetic Map15q15.1UniSTS
Cytogenetic Map15q13.1UniSTS
Cytogenetic Map1q42.1UniSTS
Cytogenetic Map5q31.2UniSTS
Cytogenetic Map1q21.2UniSTS
Cytogenetic Map17p13.1UniSTS
Cytogenetic Map1p34-p33UniSTS
Cytogenetic Map3q22.1UniSTS
Cytogenetic Map7p14UniSTS
Cytogenetic Map15q21UniSTS
Cytogenetic Map12q24.2UniSTS
Cytogenetic Map20q13UniSTS
Cytogenetic Map19q13.3-q13.4UniSTS
Cytogenetic Map17q21.32UniSTS
Cytogenetic Map15q11.2UniSTS
Cytogenetic Map8p23-p22UniSTS
Cytogenetic Map1p12UniSTS
Cytogenetic Map3q13.33UniSTS
Cytogenetic Map10p12.33UniSTS
Cytogenetic Map5q13.2UniSTS
Cytogenetic Map3q26UniSTS
Cytogenetic Map9p21.2UniSTS
Cytogenetic Map2p16.1UniSTS
Cytogenetic Map5q21.3UniSTS
Cytogenetic Map1p36.22UniSTS
Cytogenetic Map1p34.2UniSTS
Cytogenetic Map3q26.31UniSTS
Cytogenetic MapXp22.33UniSTS
Cytogenetic MapYp11.3UniSTS
Cytogenetic Map17q24.1UniSTS
Cytogenetic Map9q21.11UniSTS
Cytogenetic Map6q22.31UniSTS
Cytogenetic Map9q21.13UniSTS
Cytogenetic Map10q11.22UniSTS
Cytogenetic Map22q13.31UniSTS
Cytogenetic Map17p12UniSTS
Cytogenetic Map17q21.33UniSTS
Cytogenetic Map5p13.3UniSTS
Cytogenetic Map10q21.3UniSTS
Cytogenetic Map10q22.1UniSTS
Cytogenetic Map1p34UniSTS
Cytogenetic MapXp22UniSTS
Cytogenetic Map20p12.3-p11.21UniSTS
Cytogenetic Map2q37.1UniSTS
Cytogenetic Map6p25UniSTS
Cytogenetic MapXq27.2UniSTS
Cytogenetic Map4q31.1UniSTS
Cytogenetic Map4q31UniSTS
Cytogenetic Map22q13.1-q13.2UniSTS
Cytogenetic MapXq28UniSTS
Cytogenetic Map1p36.11UniSTS
Cytogenetic Map12q13.3UniSTS
Cytogenetic Map3q26.33UniSTS
Cytogenetic Map19q13.4UniSTS
Cytogenetic Map14q32UniSTS
Cytogenetic Map10q24.3UniSTS
Cytogenetic Map16q21UniSTS
Cytogenetic Map2p13UniSTS
Cytogenetic Map19q13.1UniSTS
Cytogenetic Map7q21-q22UniSTS
Cytogenetic Map2q11.2UniSTS
Cytogenetic Map17q25.3UniSTS
Cytogenetic Map4q22.1UniSTS
Cytogenetic Map11q22.1UniSTS
Cytogenetic Map12q14.2UniSTS
Cytogenetic Map20p13UniSTS
Cytogenetic Map7q36.3UniSTS
Cytogenetic Map20q11.21-q11.23UniSTS
Cytogenetic Map2q33.2UniSTS
Cytogenetic Map12q22UniSTS
Cytogenetic Map20q13.13UniSTS
Cytogenetic Map21p11.1UniSTS
Cytogenetic Map1p35-p34.3UniSTS
Cytogenetic Map7p11.2UniSTS
Cytogenetic Map13q14UniSTS
Cytogenetic Map7q36.1UniSTS
Cytogenetic Map12q24.31-q24.32UniSTS
Cytogenetic Map17q21.1UniSTS
Cytogenetic Map3q12.3UniSTS
Cytogenetic Map12qUniSTS
Cytogenetic Map11q13.5UniSTS
Cytogenetic Map2p14UniSTS
Cytogenetic Map2q14.3UniSTS
Cytogenetic Map7q34UniSTS
Cytogenetic Map14q32.1UniSTS
Cytogenetic Map21q22.11UniSTS
Cytogenetic Map3p14.1UniSTS
Cytogenetic Map16q23.2UniSTS
Cytogenetic Map7q32.1UniSTS
Cytogenetic Map17q22UniSTS
Cytogenetic Map4q31.23UniSTS
Cytogenetic Map11p15.3UniSTS
Cytogenetic Map3q27.1UniSTS
Cytogenetic Map2p22.3UniSTS
Cytogenetic Map22q13UniSTS
Cytogenetic Map1q32UniSTS
Cytogenetic Map11q14UniSTS
Cytogenetic MapXq13.2UniSTS
Cytogenetic Map16p13.12UniSTS
Cytogenetic MapXq22.3UniSTS
Cytogenetic Map9p12UniSTS
Cytogenetic Map4p16.1UniSTS
Cytogenetic Map11q23.1UniSTS
Cytogenetic Map3q27.3UniSTS
Cytogenetic Map16q23.1UniSTS
Cytogenetic Map15q15.2UniSTS
Cytogenetic Map2p21UniSTS
Cytogenetic Map13q33.3UniSTS
Cytogenetic Map15q22-q24UniSTS
Cytogenetic Map14q32.11UniSTS
Cytogenetic Map7p14.3UniSTS
Cytogenetic Map14q21.2UniSTS
Cytogenetic Map15q25.2UniSTS
Cytogenetic Map15q23UniSTS
Cytogenetic Map2p23.3UniSTS
Cytogenetic Map4p15.31UniSTS
Cytogenetic Map1q22UniSTS
Cytogenetic Map20q13.1UniSTS
Cytogenetic Map15q21.3UniSTS
Cytogenetic Map10q23.33UniSTS
Cytogenetic Map4q26UniSTS
Cytogenetic MapXq24UniSTS
Cytogenetic Map10q23.1UniSTS
Cytogenetic Map6p21.1UniSTS
Cytogenetic Map15q22.1-q22.31UniSTS
Cytogenetic Map1q31-q41UniSTS
Cytogenetic Map6q23.3UniSTS
Cytogenetic Map7q21.2UniSTS
Cytogenetic Map14q23UniSTS
Cytogenetic Map12q11-q12UniSTS
Cytogenetic Map17q23.3UniSTS
Cytogenetic Map4q24UniSTS
Cytogenetic Map1p32UniSTS
Cytogenetic Map3p21.1-p14.2UniSTS
Cytogenetic Map12q22-q23.1UniSTS
Cytogenetic Map6p22.1UniSTS
Cytogenetic Map6q24.2UniSTS
Cytogenetic Map9p13.3UniSTS
Cytogenetic Map6p24.1UniSTS
Cytogenetic Map19q13UniSTS
Cytogenetic Map20q11.22-q11.23UniSTS
Cytogenetic Map3p22.3UniSTS
Cytogenetic Map12q12UniSTS
Cytogenetic MapXq13-q21UniSTS
Cytogenetic Map9q34.11UniSTS
Cytogenetic Map16p13.13UniSTS
Cytogenetic Map10pter-q25.3UniSTS
Cytogenetic Map9p24.1UniSTS
Cytogenetic Map12p13.2UniSTS
Cytogenetic Map12q24UniSTS
Cytogenetic Map3q28-q29UniSTS
Cytogenetic Map10q26UniSTS
Cytogenetic Map6p22.2UniSTS
Cytogenetic Map2q13UniSTS
Cytogenetic Map12q24.2-q24.31UniSTS
Cytogenetic Map22q12.2UniSTS
Cytogenetic Map1q32.2-q41UniSTS
Cytogenetic Map11q22-q23UniSTS
Cytogenetic Map12p13.3UniSTS
Cytogenetic Map1p34.1UniSTS
Cytogenetic Map22q11UniSTS
Cytogenetic Map2q21.1UniSTS
Cytogenetic Map16p13.11UniSTS
Cytogenetic Map1q25.1UniSTS
Cytogenetic Map1p36.3UniSTS
Cytogenetic Map9p21UniSTS
Cytogenetic Map6p21.3UniSTS
Cytogenetic Map1q41UniSTS
Cytogenetic Map11q13.1-q13.3UniSTS
Cytogenetic Map16p13UniSTS
Cytogenetic Map15q26UniSTS
Cytogenetic Map18q21UniSTS
Cytogenetic Map4p15.1-p14UniSTS
Cytogenetic Map8q11.2UniSTS
Cytogenetic Map16q22UniSTS
Cytogenetic Map15q11-q13UniSTS
Cytogenetic Map7p12.3UniSTS
Cytogenetic Map7p13UniSTS
Cytogenetic Map15q26.1UniSTS
Cytogenetic Map14q22.1UniSTS
Cytogenetic Map2q12.3UniSTS
Cytogenetic MapXp22.12UniSTS
Cytogenetic Map20q11.23UniSTS
Cytogenetic Map1q21.1UniSTS
Cytogenetic Map1p36.31UniSTS
Cytogenetic Map16q11.2UniSTS
Cytogenetic Map14q32.2UniSTS
Cytogenetic Map11p15.4UniSTS
Cytogenetic Map22q11.1UniSTS
Cytogenetic Map5q33.2UniSTS
Cytogenetic Map14q23.1UniSTS
Cytogenetic Map7q32.3UniSTS
Cytogenetic Map20q13.3UniSTS
Cytogenetic Map10q26.13UniSTS
Cytogenetic Map1p31.1UniSTS
Cytogenetic Map11q13.4UniSTS
Cytogenetic Map11q23.3UniSTS
Cytogenetic Map15q25.1UniSTS
Cytogenetic Map9p13UniSTS
Cytogenetic Map2p24.2UniSTS
Cytogenetic Map9q33.3UniSTS
Cytogenetic Map19q13.31UniSTS
Cytogenetic Map11q12.2UniSTS
Cytogenetic Map7p15.3UniSTS
Cytogenetic Map6p25.2UniSTS
Cytogenetic Map6q25.1UniSTS
Cytogenetic Map3p21.31UniSTS
Cytogenetic Map17q23.2UniSTS
Cytogenetic MapXq25UniSTS
Cytogenetic Map2p25.1UniSTS
Cytogenetic Map1q25.3UniSTS
Cytogenetic Map6p24-p22.3UniSTS
Cytogenetic Map6q21UniSTS
Cytogenetic Map16p12.2UniSTS
Cytogenetic Map3q21-q24UniSTS
Cytogenetic Map4q13UniSTS
Cytogenetic Map11p13UniSTS
Cytogenetic Map9q34UniSTS
Cytogenetic Map8q13.1UniSTS
Cytogenetic Map5q21.2UniSTS
Cytogenetic Map4q34.3UniSTS
Cytogenetic Map3p22.1UniSTS
Cytogenetic Map2q37.3UniSTS
Cytogenetic Map8p23.1UniSTS
Cytogenetic Map1p13.3UniSTS
Cytogenetic Map15q14UniSTS
Cytogenetic Map13q13.3UniSTS
Cytogenetic Map12q13.2UniSTS
Cytogenetic Map1q31UniSTS
Cytogenetic Map7q11.21UniSTS
Cytogenetic Map10q26.3UniSTS
Cytogenetic Map15q15UniSTS
Cytogenetic MapXp11.4UniSTS
Cytogenetic Map8q24.12UniSTS
Cytogenetic Map15q22UniSTS
Cytogenetic Map1q25.2UniSTS
Cytogenetic Map13q11-q12UniSTS
Cytogenetic Map10q24.2UniSTS
Cytogenetic Map15q21.1UniSTS
Cytogenetic Map15q13.2UniSTS
Cytogenetic Map6q25.2UniSTS
Cytogenetic Map14q11.2UniSTS
Cytogenetic Map2q33.1UniSTS
Cytogenetic Map6q14.1UniSTS
Cytogenetic Map3q23-q24UniSTS
Cytogenetic Map2p25.1-p24.1UniSTS
Cytogenetic Map12q14.3UniSTS
Cytogenetic Map6q16.1UniSTS
Cytogenetic Map5p13.1UniSTS
Cytogenetic Map5q13UniSTS
Cytogenetic Map20pter-p12UniSTS
Cytogenetic MapXp22.11UniSTS
Cytogenetic Map16p13.2UniSTS
Cytogenetic Map16q22.3UniSTS
Cytogenetic Map7q31.3UniSTS
Cytogenetic Map21q22.13UniSTS
Cytogenetic Map1p21UniSTS
Cytogenetic Map8p11UniSTS
Cytogenetic Map7p14.2UniSTS
Cytogenetic Map8p11.23UniSTS
Cytogenetic Map18p11.22UniSTS
Cytogenetic Map18q21.33UniSTS
Cytogenetic Map9p24.3UniSTS
Cytogenetic Map11q22.3UniSTS
Cytogenetic Map14q22.2UniSTS
Cytogenetic Map20p11.22-p11.1UniSTS
Cytogenetic Map6p21.31UniSTS
Cytogenetic Map14q22.3UniSTS
Cytogenetic Map12q15UniSTS
Cytogenetic Map7q31UniSTS
Cytogenetic Map2q12.2UniSTS
Cytogenetic Map8p12UniSTS
Cytogenetic Map7p22.1UniSTS
Cytogenetic Map6p12.3UniSTS
Cytogenetic Map11q12-q13UniSTS
Cytogenetic Map18q21.1UniSTS
Cytogenetic Map10p11.21UniSTS
Cytogenetic Map6p22-p21UniSTS
Cytogenetic Map17q21.1-q21.3UniSTS
Cytogenetic Map12q24.33UniSTS
Cytogenetic Map4p15.32UniSTS
Cytogenetic Map1q42.13UniSTS
Cytogenetic Map19q12UniSTS
Cytogenetic Map3p14.3UniSTS
Cytogenetic Map12p13.2-p12.3UniSTS
Cytogenetic Map9q22.32UniSTS
Cytogenetic Map1p36.3-p36.2UniSTS
Cytogenetic Map5q22.2UniSTS
Cytogenetic Map4p15.2UniSTS
Cytogenetic Map4p15.3UniSTS
Cytogenetic Map4q28.1UniSTS
Cytogenetic Map12q13.1-q13.2UniSTS
Cytogenetic Map19q13.33UniSTS
Cytogenetic Map1p31UniSTS
Cytogenetic Map17p13.2UniSTS
Cytogenetic Map15q15.3UniSTS
Cytogenetic Map13q14.11UniSTS
Cytogenetic Map9p22.3UniSTS
Cytogenetic Map8q22.2UniSTS
Cytogenetic Map8q21.11UniSTS
Cytogenetic Map22q12.1UniSTS
Cytogenetic Map3q13.2UniSTS
Cytogenetic Map2q35UniSTS
Cytogenetic Map2q33.3UniSTS
Cytogenetic Map8p22UniSTS
Cytogenetic Map10q22.2UniSTS
Cytogenetic Map20p12.1UniSTS
Cytogenetic Map6q13UniSTS
Cytogenetic Map6q22.32UniSTS
Cytogenetic Map5q34UniSTS
Cytogenetic Map5p15.2UniSTS
Cytogenetic Map5q11.2UniSTS
Cytogenetic Map2q36.1UniSTS
Cytogenetic Map18q11.2UniSTS
Cytogenetic Map18q12.2UniSTS
Cytogenetic Map14q21.3UniSTS
Cytogenetic Map13q33.1UniSTS
Cytogenetic Map12p11.21UniSTS
Cytogenetic Map12q23.1UniSTS
Cytogenetic Map16p12.1UniSTS
Cytogenetic Map2q33UniSTS
Cytogenetic Map5q12.1UniSTS
Cytogenetic Map12q24.13UniSTS
Cytogenetic Map13q14.2UniSTS
Cytogenetic Map7q36UniSTS
Cytogenetic Map10q22.3-q23.2UniSTS
Cytogenetic Map7p15UniSTS
Cytogenetic Map14q32.31UniSTS
Cytogenetic Map11q21UniSTS
Cytogenetic Map4q21.3UniSTS
Cytogenetic Map7p13-p12UniSTS
Cytogenetic Map8p21.2UniSTS
Cytogenetic Map4q22UniSTS
Cytogenetic Map11q13UniSTS
Cytogenetic Map3q12.1UniSTS
Cytogenetic Map7q21.1-q22UniSTS
Cytogenetic Map17q21UniSTS
Cytogenetic Map3q13.13-q13.2UniSTS
Cytogenetic Map3p21.3UniSTS
Cytogenetic Map13q32.2UniSTS
Cytogenetic Map3q26.32UniSTS
Cytogenetic Map15qUniSTS
Cytogenetic Map2p13.2UniSTS
Cytogenetic Map3p12.3UniSTS
Cytogenetic Map10q11.23UniSTS
Cytogenetic Map3q11.2UniSTS
Cytogenetic Map12q13.11UniSTS
Cytogenetic Map13q14.13UniSTS
Cytogenetic Map10q23UniSTS
Cytogenetic Map11p11.2UniSTS
Cytogenetic Map6q16.2UniSTS
Cytogenetic Map3q21.1UniSTS
Cytogenetic Map10q11.21UniSTS
Cytogenetic Map1p13.2UniSTS
Cytogenetic Map6p24.2UniSTS
Cytogenetic Map20q13.33UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High
Medium 841 1608 1572 551 823 409 3677 1539 822 343 1264 1403 144 1160 2221 4 2
Low 1519 1363 143 64 991 46 675 643 2632 50 162 173 28 1 44 567 2
Below cutoff 71 20 10 8 125 9 2 12 272 25 32 36 2

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_024693 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011519689 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047425750 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054366734 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054366735 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF275677 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF289604 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK024562 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK222511 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK290902 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL138898 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC001091 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC009617 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BP332406 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471072 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068268 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM005699 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENST00000379215   ⟹   ENSP00000368517
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1011,742,382 - 11,764,070 (+)Ensembl
RefSeq Acc Id: ENST00000420401   ⟹   ENSP00000405584
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1011,742,446 - 11,755,581 (+)Ensembl
RefSeq Acc Id: ENST00000422887   ⟹   ENSP00000398429
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1011,747,275 - 11,763,351 (+)Ensembl
RefSeq Acc Id: ENST00000495787
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1011,747,450 - 11,755,730 (+)Ensembl
RefSeq Acc Id: ENST00000496136
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1011,742,366 - 11,764,070 (+)Ensembl
RefSeq Acc Id: NM_024693   ⟹   NP_078969
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381011,742,382 - 11,764,070 (+)NCBI
GRCh371011,784,356 - 11,806,065 (+)RGD
Build 361011,824,362 - 11,846,071 (+)NCBI Archive
Celera1011,712,956 - 11,734,651 (+)RGD
HuRef1011,702,272 - 11,723,888 (+)ENTREZGENE
CHM1_11011,784,346 - 11,806,050 (+)NCBI
T2T-CHM13v2.01011,753,851 - 11,775,531 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011519689   ⟹   XP_011517991
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381011,742,382 - 11,764,070 (+)NCBI
Sequence:
RefSeq Acc Id: XM_047425750   ⟹   XP_047281706
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381011,742,382 - 11,764,070 (+)NCBI
RefSeq Acc Id: XM_054366734   ⟹   XP_054222709
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01011,753,847 - 11,775,531 (+)NCBI
RefSeq Acc Id: XM_054366735   ⟹   XP_054222710
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01011,753,851 - 11,775,531 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_078969   ⟸   NM_024693
- Peptide Label: precursor
- UniProtKB: Q9BVL8 (UniProtKB/Swiss-Prot),   Q96DC8 (UniProtKB/Swiss-Prot),   Q8WYY8 (UniProtKB/Swiss-Prot),   Q5W0J7 (UniProtKB/Swiss-Prot),   Q53HR9 (UniProtKB/Swiss-Prot),   Q9H7G4 (UniProtKB/Swiss-Prot),   A0A140VKF9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011517991   ⟸   XM_011519689
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSP00000368517   ⟸   ENST00000379215
RefSeq Acc Id: ENSP00000405584   ⟸   ENST00000420401
RefSeq Acc Id: ENSP00000398429   ⟸   ENST00000422887
RefSeq Acc Id: XP_047281706   ⟸   XM_047425750
- Peptide Label: isoform X1
RefSeq Acc Id: XP_054222709   ⟸   XM_054366734
- Peptide Label: isoform X1
RefSeq Acc Id: XP_054222710   ⟸   XM_054366735
- Peptide Label: isoform X2

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q96DC8-F1-model_v2 AlphaFold Q96DC8 1-303 view protein structure

Promoters
RGD ID:7216981
Promoter ID:EPDNEW_H14234
Type:initiation region
Name:ECHDC3_1
Description:enoyl-CoA hydratase domain containing 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381011,742,382 - 11,742,442EPDNEW
RGD ID:6787517
Promoter ID:HG_KWN:8577
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:HeLa_S3,   K562,   Lymphoblastoid
Transcripts:OTTHUMT00000046771,   OTTHUMT00000046774,   UC009XIX.1
Position:
Human AssemblyChrPosition (strand)Source
Build 361011,824,244 - 11,824,744 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:23489 AgrOrtholog
COSMIC ECHDC3 COSMIC
Ensembl Genes ENSG00000134463 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000379215 ENTREZGENE
  ENST00000379215.9 UniProtKB/Swiss-Prot
  ENST00000420401.5 UniProtKB/TrEMBL
  ENST00000422887.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.12.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000134463 GTEx
HGNC ID HGNC:23489 ENTREZGENE
Human Proteome Map ECHDC3 Human Proteome Map
InterPro ClpP/crotonase-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Enoyl-CoA_hydra/iso UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Enoyl-CoA_hydra_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:79746 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene 79746 ENTREZGENE
OMIM 620756 OMIM
PANTHER ENOYL-COA HYDRATASE DOMAIN-CONTAINING PROTEIN 3, MITOCHONDRIAL UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR43602 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam ECH_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA134881215 PharmGKB
Superfamily-SCOP SSF52096 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A140VKF9 ENTREZGENE, UniProtKB/TrEMBL
  ECHD3_HUMAN UniProtKB/Swiss-Prot
  Q53HR9 ENTREZGENE
  Q5W0J6_HUMAN UniProtKB/TrEMBL
  Q5W0J7 ENTREZGENE
  Q5W0J8_HUMAN UniProtKB/TrEMBL
  Q8WYY8 ENTREZGENE
  Q96DC8 ENTREZGENE
  Q9BVL8 ENTREZGENE
  Q9H7G4 ENTREZGENE
UniProt Secondary Q53HR9 UniProtKB/Swiss-Prot
  Q5W0J7 UniProtKB/Swiss-Prot
  Q8WYY8 UniProtKB/Swiss-Prot
  Q9BVL8 UniProtKB/Swiss-Prot
  Q9H7G4 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-11-17 ECHDC3  enoyl-CoA hydratase domain containing 3    enoyl CoA hydratase domain containing 3  Symbol and/or name change 5135510 APPROVED
2011-07-27 ECHDC3  enoyl CoA hydratase domain containing 3  ECHDC3  enoyl Coenzyme A hydratase domain containing 3  Symbol and/or name change 5135510 APPROVED