SLC35B1 (solute carrier family 35 member B1) - Rat Genome Database

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Gene: SLC35B1 (solute carrier family 35 member B1) Homo sapiens
Analyze
Symbol: SLC35B1
Name: solute carrier family 35 member B1
RGD ID: 1351742
HGNC Page HGNC:20798
Description: Enables ATP:ADP antiporter activity. Predicted to be involved in UDP-galactose transmembrane transport. Located in endoplasmic reticulum membrane.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: ATP/ADP exchanger ER; ATP/ADP exchanger in the ER membrane; AXER; endoplasmic reticulum ATP/ADP translocase; hUGTrel1; solute carrier family 35, member B1; UDP-galactose transporter related; UDP-galactose transporter-related protein 1; UGTREL1
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381749,700,943 - 49,708,197 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1749,700,934 - 49,709,014 (-)EnsemblGRCh38hg38GRCh38
GRCh371747,778,305 - 47,785,326 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361745,133,689 - 45,140,281 (-)NCBINCBI36Build 36hg18NCBI36
Build 341745,133,688 - 45,140,281NCBI
Celera1744,233,680 - 44,240,270 (-)NCBICelera
Cytogenetic Map17q21.33NCBI
HuRef1743,143,297 - 43,150,313 (-)NCBIHuRef
CHM1_11747,843,310 - 47,850,327 (-)NCBICHM1_1
T2T-CHM13v2.01750,564,044 - 50,571,286 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8076819   PMID:8617505   PMID:8895530   PMID:9010752   PMID:11337467   PMID:12477932   PMID:14702039   PMID:15489334   PMID:17113583   PMID:19270184   PMID:20800603   PMID:21832049  
PMID:21873635   PMID:22082156   PMID:23506892   PMID:26496610   PMID:28298427   PMID:30154480   PMID:32179043   PMID:32296183   PMID:34373451   PMID:35041824   PMID:35271311  


Genomics

Comparative Map Data
SLC35B1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381749,700,943 - 49,708,197 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1749,700,934 - 49,709,014 (-)EnsemblGRCh38hg38GRCh38
GRCh371747,778,305 - 47,785,326 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361745,133,689 - 45,140,281 (-)NCBINCBI36Build 36hg18NCBI36
Build 341745,133,688 - 45,140,281NCBI
Celera1744,233,680 - 44,240,270 (-)NCBICelera
Cytogenetic Map17q21.33NCBI
HuRef1743,143,297 - 43,150,313 (-)NCBIHuRef
CHM1_11747,843,310 - 47,850,327 (-)NCBICHM1_1
T2T-CHM13v2.01750,564,044 - 50,571,286 (-)NCBIT2T-CHM13v2.0
Slc35b1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391195,275,696 - 95,282,602 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1195,275,518 - 95,282,602 (+)EnsemblGRCm39 Ensembl
GRCm381195,384,856 - 95,391,776 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1195,384,692 - 95,391,776 (+)EnsemblGRCm38mm10GRCm38
MGSCv371195,246,236 - 95,252,966 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361195,201,012 - 95,207,742 (+)NCBIMGSCv36mm8
Celera11105,008,860 - 105,015,576 (+)NCBICelera
Cytogenetic Map11DNCBI
cM Map1159.01NCBI
Slc35b1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81080,824,972 - 80,832,048 (+)NCBIGRCr8
mRatBN7.21080,327,921 - 80,335,279 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1080,327,945 - 80,335,274 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1085,276,663 - 85,283,743 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01084,774,708 - 84,781,789 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01080,166,875 - 80,173,936 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01083,201,532 - 83,208,605 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1083,201,311 - 83,208,605 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01083,010,919 - 83,017,992 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41084,069,903 - 84,076,976 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11084,084,272 - 84,091,346 (+)NCBI
Celera1079,100,288 - 79,107,361 (+)NCBICelera
Cytogenetic Map10q26NCBI
Slc35b1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545111,870,771 - 11,878,361 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545111,870,771 - 11,877,149 (+)NCBIChiLan1.0ChiLan1.0
SLC35B1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21965,886,119 - 65,893,139 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11770,692,673 - 70,699,464 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01743,788,382 - 43,795,123 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11748,517,876 - 48,525,070 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1748,517,867 - 48,524,937 (-)Ensemblpanpan1.1panPan2
SLC35B1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1925,767,285 - 25,776,191 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl925,769,594 - 25,776,614 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha925,225,132 - 25,234,029 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0926,561,952 - 26,570,848 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl926,561,965 - 26,570,882 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1925,329,862 - 25,338,754 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0925,591,136 - 25,597,722 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0925,718,148 - 25,727,044 (-)NCBIUU_Cfam_GSD_1.0
Slc35b1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560225,192,962 - 25,203,421 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649011,871,483 - 11,878,237 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649011,871,723 - 11,880,595 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC35B1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1225,881,256 - 25,888,293 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11225,881,832 - 25,888,546 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21225,888,584 - 25,895,143 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SLC35B1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11670,096,008 - 70,102,714 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1670,096,183 - 70,102,527 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607741,204,760 - 41,211,493 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc35b1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247955,781,988 - 5,792,828 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247955,786,766 - 5,792,822 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in SLC35B1
9 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 17q21.33-24.2(chr17:36449220-68170214)x3 copy number gain See cases [RCV000050957] Chr17:36449220..68170214 [GRCh38]
Chr17:48563237..65936105 [GRCh37]
Chr17:45918236..63677950 [NCBI36]
Chr17:17q21.33-24.2		 pathogenic
GRCh38/hg38 17q23.2-25.3(chr17:36449220-83086677)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052483]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052483]|See cases [RCV000052483] Chr17:36449220..83086677 [GRCh38]
Chr17:58617905..81044553 [GRCh37]
Chr17:55972687..78637842 [NCBI36]
Chr17:17q23.2-25.3		 pathogenic
GRCh38/hg38 17q21.32-22(chr17:49137864-52147810)x1 copy number loss See cases [RCV000053432] Chr17:49137864..52147810 [GRCh38]
Chr17:47215226..50225170 [GRCh37]
Chr17:44570225..47580169 [NCBI36]
Chr17:17q21.32-22		 pathogenic
GRCh38/hg38 17q23.1-25.1(chr17:36449220-75053130)x3 copy number gain See cases [RCV000137437] Chr17:36449220..75053130 [GRCh38]
Chr17:57595736..73049225 [GRCh37]
Chr17:54950518..70560820 [NCBI36]
Chr17:17q23.1-25.1		 pathogenic
GRCh38/hg38 17q21.33(chr17:49361155-50269440)x1 copy number loss See cases [RCV000139901] Chr17:49361155..50269440 [GRCh38]
Chr17:47438517..48346801 [GRCh37]
Chr17:44793516..45701800 [NCBI36]
Chr17:17q21.33		 pathogenic
GRCh37/hg19 17q21.31-25.3(chr17:42580684-81085615)x3 copy number gain See cases [RCV000447823] Chr17:42580684..81085615 [GRCh37]
Chr17:17q21.31-25.3		 pathogenic
GRCh37/hg19 17p13.3-q25.3(chr17:526-81041938) copy number gain See cases [RCV000511439] Chr17:526..81041938 [GRCh37]
Chr17:17p13.3-q25.3		 pathogenic
NM_005827.4(SLC35B1):c.278C>G (p.Ser93Cys) single nucleotide variant Inborn genetic diseases [RCV003253561] Chr17:49706265 [GRCh38]
Chr17:47783627 [GRCh37]
Chr17:17q21.33		 uncertain significance
GRCh37/hg19 17p13.3-q25.3(chr17:526-81041938)x3 copy number gain See cases [RCV000512441] Chr17:526..81041938 [GRCh37]
Chr17:17p13.3-q25.3		 pathogenic
GRCh37/hg19 17q21.32-22(chr17:46481089-51396368)x1 copy number loss not provided [RCV000513510] Chr17:46481089..51396368 [GRCh37]
Chr17:17q21.32-22		 likely pathogenic
GRCh37/hg19 17p13.3-q25.3(chr17:7214-81058310)x3 copy number gain not provided [RCV000739320] Chr17:7214..81058310 [GRCh37]
Chr17:17p13.3-q25.3		 pathogenic
GRCh37/hg19 17p13.3-q25.3(chr17:12344-81057996)x3 copy number gain not provided [RCV000739325] Chr17:12344..81057996 [GRCh37]
Chr17:17p13.3-q25.3		 pathogenic
GRCh37/hg19 17p13.3-q25.3(chr17:8547-81060040)x3 copy number gain not provided [RCV000739324] Chr17:8547..81060040 [GRCh37]
Chr17:17p13.3-q25.3		 pathogenic
GRCh37/hg19 17q21.33(chr17:47689783-47791730)x1 copy number loss not provided [RCV001006905] Chr17:47689783..47791730 [GRCh37]
Chr17:17q21.33		 uncertain significance
NM_005827.4(SLC35B1):c.148A>G (p.Thr50Ala) single nucleotide variant Inborn genetic diseases [RCV002884108] Chr17:49707025 [GRCh38]
Chr17:47784387 [GRCh37]
Chr17:17q21.33		 uncertain significance
NM_005827.4(SLC35B1):c.719T>A (p.Ile240Asn) single nucleotide variant Inborn genetic diseases [RCV002888225] Chr17:49703231 [GRCh38]
Chr17:47780593 [GRCh37]
Chr17:17q21.33		 uncertain significance
NM_005827.4(SLC35B1):c.126A>C (p.Glu42Asp) single nucleotide variant Inborn genetic diseases [RCV002699490] Chr17:49707047 [GRCh38]
Chr17:47784409 [GRCh37]
Chr17:17q21.33		 uncertain significance
NM_005827.4(SLC35B1):c.272C>G (p.Ser91Cys) single nucleotide variant Inborn genetic diseases [RCV002986073] Chr17:49706271 [GRCh38]
Chr17:47783633 [GRCh37]
Chr17:17q21.33		 uncertain significance
NM_005827.4(SLC35B1):c.893T>A (p.Val298Glu) single nucleotide variant Inborn genetic diseases [RCV002892389] Chr17:49702881 [GRCh38]
Chr17:47780243 [GRCh37]
Chr17:17q21.33		 uncertain significance
NM_005827.4(SLC35B1):c.322G>C (p.Val108Leu) single nucleotide variant Inborn genetic diseases [RCV003210721] Chr17:49706221 [GRCh38]
Chr17:47783583 [GRCh37]
Chr17:17q21.33		 uncertain significance
NM_005827.4(SLC35B1):c.865G>A (p.Ala289Thr) single nucleotide variant Inborn genetic diseases [RCV003197579] Chr17:49702909 [GRCh38]
Chr17:47780271 [GRCh37]
Chr17:17q21.33		 uncertain significance
NM_005827.4(SLC35B1):c.143C>T (p.Thr48Met) single nucleotide variant Inborn genetic diseases [RCV003195639] Chr17:49707030 [GRCh38]
Chr17:47784392 [GRCh37]
Chr17:17q21.33		 uncertain significance
Single allele deletion Tricho-dento-osseous syndrome [RCV003494599] Chr17:46740736..48853218 [GRCh37]
Chr17:17q21.32-21.33		 pathogenic
NM_005827.4(SLC35B1):c.396G>A (p.Leu132=) single nucleotide variant SLC35B1-related condition [RCV003976434] Chr17:49705256 [GRCh38]
Chr17:47782618 [GRCh37]
Chr17:17q21.33		 likely benign
NM_005827.4(SLC35B1):c.-107G>A single nucleotide variant SLC35B1-related condition [RCV003937128] Chr17:49707940 [GRCh38]
Chr17:47785302 [GRCh37]
Chr17:17q21.33		 likely benign
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:4034
Count of miRNA genes:1009
Interacting mature miRNAs:1254
Transcripts:ENST00000240333, ENST00000415270, ENST00000435059, ENST00000502268, ENST00000502406, ENST00000503334, ENST00000504260, ENST00000505765, ENST00000507477, ENST00000507773, ENST00000508520, ENST00000508607, ENST00000508749, ENST00000508926, ENST00000509781, ENST00000511657, ENST00000511763, ENST00000513508, ENST00000514907, ENST00000515850
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
A007B33  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371747,778,675 - 47,778,783UniSTSGRCh37
Build 361745,133,674 - 45,133,782RGDNCBI36
Celera1744,233,665 - 44,233,773RGD
Cytogenetic Map17q21.33UniSTS
HuRef1743,143,676 - 43,143,784UniSTS
GeneMap99-GB4 RH Map17344.85UniSTS
NCBI RH Map17638.1UniSTS
MARC_7913-7914:1010423980:1  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371747,780,609 - 47,781,503UniSTSGRCh37
Build 361745,135,608 - 45,136,502RGDNCBI36
Celera1744,235,599 - 44,236,491RGD
HuRef1743,145,611 - 43,146,503UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High
Medium 2419 2693 1697 602 1736 445 4353 2096 3383 387 1442 1606 171 1204 2787 3
Low 17 296 28 22 215 20 3 100 350 32 14 7 4 1 1 1 2
Below cutoff 1 1 1 1 4 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001278784 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_005827 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005256929 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006721632 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011524179 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011524180 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054314669 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054314670 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054314671 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC015795 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI252816 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK098056 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK124975 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK293563 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK296073 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AU099388 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AU309730 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC011888 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BM476321 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX641166 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471109 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068261 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CR745911 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CX164572 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D87989 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DR980774 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z36793 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENST00000240333   ⟹   ENSP00000240333
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1749,700,943 - 49,707,964 (-)Ensembl
RefSeq Acc Id: ENST00000435059
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1749,703,932 - 49,707,920 (-)Ensembl
RefSeq Acc Id: ENST00000502268   ⟹   ENSP00000424857
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1749,703,233 - 49,707,067 (-)Ensembl
RefSeq Acc Id: ENST00000502406
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1749,701,321 - 49,708,166 (-)Ensembl
RefSeq Acc Id: ENST00000503334   ⟹   ENSP00000423323
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1749,702,892 - 49,708,163 (-)Ensembl
RefSeq Acc Id: ENST00000504260
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1749,701,287 - 49,707,771 (-)Ensembl
RefSeq Acc Id: ENST00000505765
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1749,705,885 - 49,707,260 (-)Ensembl
RefSeq Acc Id: ENST00000507477
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1749,701,328 - 49,703,990 (-)Ensembl
RefSeq Acc Id: ENST00000507773   ⟹   ENSP00000425179
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1749,701,339 - 49,708,090 (-)Ensembl
RefSeq Acc Id: ENST00000508520   ⟹   ENSP00000424367
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1749,703,197 - 49,708,169 (-)Ensembl
RefSeq Acc Id: ENST00000508607
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1749,706,076 - 49,707,920 (-)Ensembl
RefSeq Acc Id: ENST00000508749
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1749,701,328 - 49,703,138 (-)Ensembl
RefSeq Acc Id: ENST00000508926
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1749,705,072 - 49,706,355 (-)Ensembl
RefSeq Acc Id: ENST00000509781
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1749,705,868 - 49,707,964 (-)Ensembl
RefSeq Acc Id: ENST00000511657   ⟹   ENSP00000426402
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1749,705,222 - 49,709,014 (-)Ensembl
RefSeq Acc Id: ENST00000511763   ⟹   ENSP00000422104
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1749,704,152 - 49,707,940 (-)Ensembl
RefSeq Acc Id: ENST00000513508
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1749,703,838 - 49,705,365 (-)Ensembl
RefSeq Acc Id: ENST00000514907   ⟹   ENSP00000426961
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1749,704,100 - 49,708,157 (-)Ensembl
RefSeq Acc Id: ENST00000515850   ⟹   ENSP00000427689
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1749,704,111 - 49,707,949 (-)Ensembl
RefSeq Acc Id: ENST00000649906   ⟹   ENSP00000497423
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1749,700,934 - 49,707,951 (-)Ensembl
RefSeq Acc Id: NM_001278784   ⟹   NP_001265713
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381749,700,943 - 49,707,964 (-)NCBI
HuRef1743,143,297 - 43,150,313 (-)NCBI
CHM1_11747,843,310 - 47,850,327 (-)NCBI
T2T-CHM13v2.01750,564,044 - 50,571,064 (-)NCBI
Sequence:
RefSeq Acc Id: NM_005827   ⟹   NP_005818
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381749,700,943 - 49,707,964 (-)NCBI
GRCh371747,778,296 - 47,785,313 (-)NCBI
Build 361745,133,689 - 45,140,281 (-)NCBI Archive
Celera1744,233,680 - 44,240,270 (-)RGD
HuRef1743,143,297 - 43,150,313 (-)NCBI
CHM1_11747,843,310 - 47,850,327 (-)NCBI
T2T-CHM13v2.01750,564,044 - 50,571,064 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006721632   ⟹   XP_006721695
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381749,700,943 - 49,707,964 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011524179   ⟹   XP_011522481
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381749,700,943 - 49,707,964 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011524180   ⟹   XP_011522482
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381749,700,943 - 49,708,197 (-)NCBI
Sequence:
RefSeq Acc Id: XM_054314669   ⟹   XP_054170644
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01750,564,044 - 50,571,064 (-)NCBI
RefSeq Acc Id: XM_054314670   ⟹   XP_054170645
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01750,564,044 - 50,571,064 (-)NCBI
RefSeq Acc Id: XM_054314671   ⟹   XP_054170646
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01750,564,044 - 50,571,286 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_005818   ⟸   NM_005827
- Peptide Label: isoform 1
- UniProtKB: P78383 (UniProtKB/Swiss-Prot),   J3KQV4 (UniProtKB/Swiss-Prot),   B4DEC4 (UniProtKB/Swiss-Prot),   Q96EW7 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001265713   ⟸   NM_001278784
- Peptide Label: isoform 2
- UniProtKB: D6R981 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006721695   ⟸   XM_006721632
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_011522482   ⟸   XM_011524180
- Peptide Label: isoform X3
- UniProtKB: D6R981 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011522481   ⟸   XM_011524179
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSP00000424857   ⟸   ENST00000502268
RefSeq Acc Id: ENSP00000497423   ⟸   ENST00000649906
RefSeq Acc Id: ENSP00000423323   ⟸   ENST00000503334
RefSeq Acc Id: ENSP00000240333   ⟸   ENST00000240333
RefSeq Acc Id: ENSP00000425179   ⟸   ENST00000507773
RefSeq Acc Id: ENSP00000424367   ⟸   ENST00000508520
RefSeq Acc Id: ENSP00000422104   ⟸   ENST00000511763
RefSeq Acc Id: ENSP00000426402   ⟸   ENST00000511657
RefSeq Acc Id: ENSP00000426961   ⟸   ENST00000514907
RefSeq Acc Id: ENSP00000427689   ⟸   ENST00000515850
RefSeq Acc Id: XP_054170646   ⟸   XM_054314671
- Peptide Label: isoform X3
RefSeq Acc Id: XP_054170645   ⟸   XM_054314670
- Peptide Label: isoform X2
RefSeq Acc Id: XP_054170644   ⟸   XM_054314669
- Peptide Label: isoform X1

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P78383-F1-model_v2 AlphaFold P78383 1-322 view protein structure

Promoters
RGD ID:6794542
Promoter ID:HG_KWN:26538
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   HeLa_S3,   Jurkat,   K562,   Lymphoblastoid,   NB4
Transcripts:ENST00000376622,   NM_005827,   UC002IPI.1,   UC002IPJ.1
Position:
Human AssemblyChrPosition (strand)Source
Build 361745,140,226 - 45,140,747 (-)MPROMDB
RGD ID:7235599
Promoter ID:EPDNEW_H23544
Type:initiation region
Name:SLC35B1_2
Description:solute carrier family 35 member B1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H23545  EPDNEW_H23546  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381749,707,953 - 49,708,013EPDNEW
RGD ID:7235597
Promoter ID:EPDNEW_H23545
Type:initiation region
Name:SLC35B1_1
Description:solute carrier family 35 member B1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H23544  EPDNEW_H23546  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381749,708,170 - 49,708,230EPDNEW
RGD ID:7235603
Promoter ID:EPDNEW_H23546
Type:initiation region
Name:SLC35B1_3
Description:solute carrier family 35 member B1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H23545  EPDNEW_H23544  
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381749,709,034 - 49,709,094EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:20798 AgrOrtholog
COSMIC SLC35B1 COSMIC
Ensembl Genes ENSG00000121073 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000240333 ENTREZGENE
  ENST00000240333.12 UniProtKB/Swiss-Prot
  ENST00000502268.5 UniProtKB/TrEMBL
  ENST00000503334 ENTREZGENE
  ENST00000503334.5 UniProtKB/TrEMBL
  ENST00000507773.6 UniProtKB/TrEMBL
  ENST00000508520.5 UniProtKB/TrEMBL
  ENST00000511657.1 UniProtKB/TrEMBL
  ENST00000511763.6 UniProtKB/TrEMBL
  ENST00000514907.5 UniProtKB/TrEMBL
  ENST00000515850.6 UniProtKB/TrEMBL
  ENST00000649906.1 UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.3730.20 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000121073 GTEx
HGNC ID HGNC:20798 ENTREZGENE
Human Proteome Map SLC35B1 Human Proteome Map
InterPro UAA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:10237 UniProtKB/Swiss-Prot
NCBI Gene 10237 ENTREZGENE
OMIM 610790 OMIM
PANTHER PTHR10778 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SOLUTE CARRIER FAMILY 35 MEMBER B1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam UAA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA134864001 PharmGKB
Superfamily-SCOP Multidrug resistance efflux transporter EmrE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt B4DEC4 ENTREZGENE
  D6R981 ENTREZGENE, UniProtKB/TrEMBL
  D6R9G9_HUMAN UniProtKB/TrEMBL
  D6RB73_HUMAN UniProtKB/TrEMBL
  D6RDY9_HUMAN UniProtKB/TrEMBL
  D6RE58_HUMAN UniProtKB/TrEMBL
  D6RF81_HUMAN UniProtKB/TrEMBL
  D6RG34_HUMAN UniProtKB/TrEMBL
  D6RHG0_HUMAN UniProtKB/TrEMBL
  J3KQV4 ENTREZGENE
  P78383 ENTREZGENE
  Q96EW7 ENTREZGENE
  S35B1_HUMAN UniProtKB/Swiss-Prot
UniProt Secondary B4DEC4 UniProtKB/Swiss-Prot
  J3KQV4 UniProtKB/Swiss-Prot
  Q96EW7 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-12-08 SLC35B1  solute carrier family 35 member B1    solute carrier family 35, member B1  Symbol and/or name change 5135510 APPROVED