SDHAP2 (SDHA pseudogene 2) - Rat Genome Database

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Gene: SDHAP2 (SDHA pseudogene 2) Homo sapiens
Analyze
Symbol: SDHAP2
Name: SDHA pseudogene 2
RGD ID: 1351623
HGNC Page HGNC:27408
Description: INTERACTS WITH antirheumatic drug; benzo[a]pyrene; cisplatin
Type: pseudo (Ensembl: transcribed_unprocessed_pseudogene)
RefSeq Status: VALIDATED
Previously known as: AC069513.3; SDHAL2; SDHALP2; succinate dehydrogenase complex flavoprotein subunit A pseudogene 2
Related Functional Gene: SDHA  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383195,658,039 - 195,688,871 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3195,658,096 - 195,685,904 (+)EnsemblGRCh38hg38GRCh38
GRCh373195,384,910 - 195,415,742 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363196,867,186 - 196,904,457 (+)NCBINCBI36Build 36hg18NCBI36
Build 343196,874,057 - 196,904,827NCBI
Celera3195,939,225 - 195,943,696 (-)NCBICelera
Cytogenetic Map3q29NCBI
HuRef3193,002,943 - 193,017,538 (-)NCBIHuRef
CHM1_13195,347,457 - 195,378,286 (+)NCBICHM1_1
T2T-CHM13v2.03198,367,744 - 198,398,284 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10737800   PMID:12477932   PMID:14702039   PMID:16344560   PMID:29117863   PMID:33961781  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:9229
Count of miRNA genes:1314
Interacting mature miRNAs:1771
Transcripts:ENST00000414625, ENST00000417704, ENST00000420459, ENST00000420851, ENST00000424730, ENST00000425425, ENST00000429897, ENST00000431767, ENST00000432194, ENST00000432601, ENST00000438608, ENST00000445430, ENST00000445707, ENST00000446521, ENST00000451216, ENST00000451228, ENST00000451982, ENST00000452844, ENST00000453324, ENST00000455183, ENST00000455807, ENST00000457233, ENST00000539252, ENST00000539717, ENST00000593988, ENST00000594101, ENST00000594446, ENST00000594715, ENST00000594976, ENST00000595086, ENST00000595382, ENST00000596584, ENST00000597034, ENST00000597482, ENST00000597662, ENST00000597871, ENST00000597982, ENST00000598992, ENST00000599448, ENST00000599566, ENST00000600197, ENST00000600288, ENST00000600382, ENST00000600527, ENST00000601648, ENST00000601955, ENST00000602127, ENST00000602175, ENST00000608737
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
RH12738  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh373195,703,496 - 195,703,620UniSTSGRCh37
GRCh373195,398,505 - 195,398,629UniSTSGRCh37
Build 363196,883,686 - 196,883,810RGDNCBI36
Cytogenetic Map3q29UniSTS
HuRef3193,005,172 - 193,005,296UniSTS
GeneMap99-GB4 RH Map3726.38UniSTS
RH45269  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh373197,346,109 - 197,346,344UniSTSGRCh37
Build 363198,830,506 - 198,830,741RGDNCBI36
Celera3195,938,737 - 195,938,972RGD
Cytogenetic Map3q29UniSTS
HuRef3194,648,073 - 194,648,308UniSTS
GeneMap99-GB4 RH Map3730.33UniSTS
RH76040  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh373195,686,655 - 195,686,890UniSTSGRCh37
GRCh373195,415,471 - 195,415,706UniSTSGRCh37
Build 363196,900,652 - 196,900,887RGDNCBI36
Cytogenetic Map3q29UniSTS
RH104253  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh373195,401,617 - 195,401,736UniSTSGRCh37
Build 363196,886,798 - 196,886,917RGDNCBI36
Cytogenetic Map3q29UniSTS
GeneMap99-GB4 RH Map3726.38UniSTS
G19921  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh373195,398,586 - 195,398,690UniSTSGRCh37
Build 363196,883,767 - 196,883,871RGDNCBI36
Cytogenetic Map3q29UniSTS
A002C12  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh373195,398,586 - 195,398,690UniSTSGRCh37
Build 363196,883,767 - 196,883,871RGDNCBI36
Cytogenetic Map3q29UniSTS
GeneMap99-GB4 RH Map3726.48UniSTS
NCBI RH Map32000.6UniSTS
STS-T71278  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map3q29UniSTS
GeneMap99-GB4 RH Map3726.38UniSTS
RH63773  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map5p15UniSTS
Cytogenetic Map3q29UniSTS
G33146  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map5p15UniSTS
Cytogenetic Map3q29UniSTS
SHGC-31380  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map3q29UniSTS
TNG Radiation Hybrid Map3108174.0UniSTS
GeneMap99-G3 RH Map39083.0UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 918 721 665 108 255 30 1912 442 945 102 791 928 82 491 1294
Low 1514 2208 1054 508 1649 428 2443 1736 2708 315 656 679 88 713 1494 4
Below cutoff 55 6 6 44 6 15 69 1 1 1

Sequence


RefSeq Acc Id: ENST00000455183
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3195,658,096 - 195,685,904 (+)Ensembl
RefSeq Acc Id: NR_003265
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh383195,658,039 - 195,688,871 (+)NCBI
GRCh373195,384,910 - 195,415,742 (+)RGD
Celera3195,939,225 - 195,943,696 (-)RGD
HuRef3193,002,943 - 193,017,538 (-)RGD
CHM1_13195,347,457 - 195,378,286 (+)NCBI
T2T-CHM13v2.03198,367,744 - 198,398,284 (+)NCBI
Sequence:
Protein Sequences
GenBank Protein BAH14396 (Get FASTA)   NCBI Sequence Viewer  

Promoters
RGD ID:6800547
Promoter ID:HG_KWN:47401
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   K562,   Lymphoblastoid
Transcripts:OTTHUMT00000341935
Position:
Human AssemblyChrPosition (strand)Source
Build 363196,908,664 - 196,909,164 (+)MPROMDB
RGD ID:6800548
Promoter ID:HG_KWN:47402
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Lymphoblastoid
Transcripts:OTTHUMT00000341939
Position:
Human AssemblyChrPosition (strand)Source
Build 363196,910,226 - 196,910,927 (+)MPROMDB
RGD ID:6800551
Promoter ID:HG_KWN:47403
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   Jurkat,   K562,   Lymphoblastoid,   NB4
Transcripts:ENST00000381957,   OTTHUMT00000341936
Position:
Human AssemblyChrPosition (strand)Source
Build 363196,911,286 - 196,913,687 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
COSMIC SDHAP2 COSMIC
Ensembl Genes ENSG00000215837 Ensembl
  ENSG00000242086 ENTREZGENE
Ensembl Transcript ENST00000429897 ENTREZGENE
GTEx ENSG00000215837 GTEx
  ENSG00000242086 GTEx
HGNC ID HGNC:27408 ENTREZGENE
Human Proteome Map SDHAP2 Human Proteome Map
NCBI Gene 727956 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-07-26 SDHAP2  SDHA pseudogene 2  SDHAP2  succinate dehydrogenase complex flavoprotein subunit A pseudogene 2  Symbol and/or name change 19259463 PROVISIONAL
2016-02-02 SDHAP2  succinate dehydrogenase complex flavoprotein subunit A pseudogene 2    succinate dehydrogenase complex, subunit A, flavoprotein pseudogene 2  Symbol and/or name change 5135510 APPROVED
2011-07-27 SDHAP2  succinate dehydrogenase complex, subunit A, flavoprotein pseudogene 2  SDHALP2  succinate dehydrogenase complex, subunit A, flavoprotein pseudogene 2  Symbol and/or name change 5135510 APPROVED