ZNF239 (zinc finger protein 239) - Rat Genome Database

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Gene: ZNF239 (zinc finger protein 239) Homo sapiens
Analyze
Symbol: ZNF239
Name: zinc finger protein 239
RGD ID: 1351594
HGNC Page HGNC:13031
Description: Enables DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in negative regulation of transcription by RNA polymerase II. Predicted to be located in nucleus.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: HOK-2; MOK2; zinc finger protein (C2H2) homologous to mouse MOK-2; zinc finger protein HOK-2; zinc finger protein MOK-2
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381043,556,344 - 43,574,616 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1043,556,344 - 43,574,618 (-)EnsemblGRCh38hg38GRCh38
GRCh371044,051,792 - 44,070,064 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361043,371,798 - 43,390,072 (-)NCBINCBI36Build 36hg18NCBI36
Build 341043,371,800 - 43,383,913NCBI
Celera1040,055,429 - 40,073,702 (-)NCBICelera
Cytogenetic Map10q11.21NCBI
HuRef1040,579,145 - 40,597,405 (-)NCBIHuRef
CHM1_11044,091,430 - 44,109,701 (-)NCBICHM1_1
T2T-CHM13v2.01044,437,270 - 44,455,539 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IEA)

References

References - curated
# Reference Title Reference Citation
1. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8587123   PMID:8903737   PMID:9121460   PMID:11278819   PMID:12409453   PMID:12477932   PMID:15057824   PMID:15489334   PMID:16344560   PMID:16385451   PMID:17081983   PMID:17760566  
PMID:19490114   PMID:19913121   PMID:20628086   PMID:20641033   PMID:21873635   PMID:25416956   PMID:29180619   PMID:32296183   PMID:32814053   PMID:35563538  


Genomics

Comparative Map Data
ZNF239
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381043,556,344 - 43,574,616 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1043,556,344 - 43,574,618 (-)EnsemblGRCh38hg38GRCh38
GRCh371044,051,792 - 44,070,064 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361043,371,798 - 43,390,072 (-)NCBINCBI36Build 36hg18NCBI36
Build 341043,371,800 - 43,383,913NCBI
Celera1040,055,429 - 40,073,702 (-)NCBICelera
Cytogenetic Map10q11.21NCBI
HuRef1040,579,145 - 40,597,405 (-)NCBIHuRef
CHM1_11044,091,430 - 44,109,701 (-)NCBICHM1_1
T2T-CHM13v2.01044,437,270 - 44,455,539 (-)NCBIT2T-CHM13v2.0
Zfp239
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396117,838,907 - 117,849,727 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6117,839,061 - 117,850,252 (+)EnsemblGRCm39 Ensembl
GRCm386117,862,024 - 117,872,766 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6117,862,100 - 117,873,291 (+)EnsemblGRCm38mm10GRCm38
MGSCv376117,813,095 - 117,822,784 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366117,828,696 - 117,838,385 (+)NCBIMGSCv36mm8
Celera6119,683,153 - 119,692,842 (+)NCBICelera
Cytogenetic Map6F1NCBI
cM Map655.62NCBI
Zfp239
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84152,701,818 - 152,711,698 (+)NCBIGRCr8
mRatBN7.24151,029,431 - 151,039,283 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4151,029,405 - 151,039,529 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4157,291,705 - 157,299,214 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04153,075,626 - 153,083,135 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04151,698,638 - 151,706,147 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04149,902,278 - 149,909,841 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4149,908,375 - 149,908,980 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04215,831,518 - 215,838,957 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera4139,905,074 - 139,912,552 (+)NCBICelera
Cytogenetic Map4q42NCBI
Znf239
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555461,451,303 - 1,466,845 (-)NCBIChiLan1.0ChiLan1.0
ZNF239
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2856,276,380 - 56,297,777 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11056,276,463 - 56,303,105 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01040,539,647 - 40,557,945 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11043,721,112 - 43,739,279 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1043,720,119 - 43,722,843 (-)Ensemblpanpan1.1panPan2
ZNF239
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1283,529,093 - 3,542,049 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl283,540,074 - 3,541,294 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha283,762,024 - 3,806,763 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0283,707,539 - 3,752,178 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl283,707,313 - 3,735,369 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1283,504,530 - 3,549,498 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0283,546,693 - 3,592,151 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0283,681,554 - 3,726,365 (+)NCBIUU_Cfam_GSD_1.0
Znf239
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721383,383,250 - 83,413,184 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366173,378,718 - 3,380,237 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366173,377,223 - 3,400,709 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZNF239
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1492,189,896 - 92,204,987 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11492,189,825 - 92,202,641 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214100,611,433 - 100,624,183 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ZNF239
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1939,225,181 - 39,236,129 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl939,225,544 - 39,226,920 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605647,226,179 - 47,239,227 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Znf239
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624922646,676 - 668,862 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ZNF239
19 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 10q11.21-21.2(chr10:42335305-60284876)x1 copy number loss Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052506]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052506]|See cases [RCV000052506] Chr10:42335305..60284876 [GRCh38]
Chr10:42830753..62044634 [GRCh37]
Chr10:42150759..61714640 [NCBI36]
Chr10:10q11.21-21.2		 pathogenic
NM_001099282.1(ZNF239):c.46C>T (p.Arg16Ter) single nucleotide variant Malignant melanoma [RCV000068937] Chr10:43558034 [GRCh38]
Chr10:44053482 [GRCh37]
Chr10:43373488 [NCBI36]
Chr10:10q11.21		 not provided
GRCh38/hg38 10q11.21-21.1(chr10:42884294-52265317)x3 copy number gain See cases [RCV000134381] Chr10:42884294..52265317 [GRCh38]
Chr10:43379742..54025077 [GRCh37]
Chr10:42699748..53695083 [NCBI36]
Chr10:10q11.21-21.1		 pathogenic
GRCh38/hg38 10q11.21(chr10:43545153-43603440)x3 copy number gain See cases [RCV000135172] Chr10:43545153..43603440 [GRCh38]
Chr10:44040601..44098888 [GRCh37]
Chr10:43360607..43418894 [NCBI36]
Chr10:10q11.21		 likely benign
GRCh38/hg38 10q11.21-11.23(chr10:42395201-50877059)x3 copy number gain See cases [RCV000134846] Chr10:42395201..50877059 [GRCh38]
Chr10:42890649..52636819 [GRCh37]
Chr10:42210655..52306825 [NCBI36]
Chr10:10q11.21-11.23		 pathogenic
GRCh38/hg38 10q11.21-22.2(chr10:42685306-73715908)x3 copy number gain See cases [RCV000134848] Chr10:42685306..73715908 [GRCh38]
Chr10:43180754..75475666 [GRCh37]
Chr10:42500760..75145672 [NCBI36]
Chr10:10q11.21-22.2		 pathogenic
GRCh38/hg38 10p15.1-q11.22(chr10:4604734-48074662)x3 copy number gain See cases [RCV000141497] Chr10:4604734..48074662 [GRCh38]
Chr10:4646926..47531169 [GRCh37]
Chr10:4636926..47125152 [NCBI36]
Chr10:10p15.1-q11.22		 benign
GRCh38/hg38 10q11.21-21.3(chr10:42112187-67400675)x3 copy number gain See cases [RCV000142967] Chr10:42112187..67400675 [GRCh38]
Chr10:42607635..69160433 [GRCh37]
Chr10:41927641..68830439 [NCBI36]
Chr10:10q11.21-21.3		 pathogenic
NM_001099282.2(ZNF239):c.11C>T (p.Thr4Ile) single nucleotide variant Inborn genetic diseases [RCV003266678] Chr10:43558069 [GRCh38]
Chr10:44053517 [GRCh37]
Chr10:10q11.21		 uncertain significance
NC_000010.10:g.43611191_61663279inv inversion Pediatric metastatic thyroid tumour [RCV000585841] Chr10:43611191..61663279 [GRCh37]
Chr10:10q11.21-21.2		 likely pathogenic
GRCh37/hg19 10p15.3-q26.3(chr10:93297-135378918)x3 copy number gain See cases [RCV000448750] Chr10:93297..135378918 [GRCh37]
Chr10:10p15.3-q26.3		 pathogenic
GRCh37/hg19 10q11.21(chr10:42706947-44489498)x3 copy number gain See cases [RCV000510280] Chr10:42706947..44489498 [GRCh37]
Chr10:10q11.21		 uncertain significance
GRCh37/hg19 10p15.3-q26.3(chr10:100027-135427143) copy number gain See cases [RCV000511389] Chr10:100027..135427143 [GRCh37]
Chr10:10p15.3-q26.3		 pathogenic|uncertain significance
GRCh37/hg19 10p15.3-q11.23(chr10:100026-50961640)x3 copy number gain See cases [RCV000510893] Chr10:100026..50961640 [GRCh37]
Chr10:10p15.3-q11.23		 pathogenic
GRCh37/hg19 10p15.3-q26.3(chr10:100027-135427143)x3 copy number gain See cases [RCV000510861] Chr10:100027..135427143 [GRCh37]
Chr10:10p15.3-q26.3		 pathogenic
GRCh37/hg19 10q11.21-26.3(chr10:42347406-135534747)x1 copy number loss Poly (ADP-Ribose) polymerase inhibitor response [RCV000626438] Chr10:42347406..135534747 [GRCh37]
Chr10:10q11.21-26.3		 drug response
GRCh37/hg19 10p15.3-q26.3(chr10:98087-135477883)x3 copy number gain not provided [RCV000749465] Chr10:98087..135477883 [GRCh37]
Chr10:10p15.3-q26.3		 pathogenic
GRCh37/hg19 10p15.3-q26.3(chr10:73232-135524321)x3 copy number gain not provided [RCV000749464] Chr10:73232..135524321 [GRCh37]
Chr10:10p15.3-q26.3		 pathogenic
GRCh37/hg19 10p11.21-q11.22(chr10:37149872-46169876)x3 copy number gain not provided [RCV000762700] Chr10:37149872..46169876 [GRCh37]
Chr10:10p11.21-q11.22		 likely pathogenic
NM_001099282.2(ZNF239):c.145A>C (p.Thr49Pro) single nucleotide variant Inborn genetic diseases [RCV003271162] Chr10:43557935 [GRCh38]
Chr10:44053383 [GRCh37]
Chr10:10q11.21		 uncertain significance
GRCh37/hg19 10p15.3-q11.22(chr10:135655-47688677)x4 copy number gain Mosaic supernumerary isodicentric chromosome 10 [RCV001825164] Chr10:135655..47688677 [GRCh37]
Chr10:10p15.3-q11.22		 not provided
GRCh37/hg19 10q11.21(chr10:43683704-44151599) copy number gain not specified [RCV002052869] Chr10:43683704..44151599 [GRCh37]
Chr10:10q11.21		 uncertain significance
NM_001099282.2(ZNF239):c.929A>T (p.Gln310Leu) single nucleotide variant Inborn genetic diseases [RCV002902109] Chr10:43557151 [GRCh38]
Chr10:44052599 [GRCh37]
Chr10:10q11.21		 uncertain significance
NM_001099282.2(ZNF239):c.32G>A (p.Cys11Tyr) single nucleotide variant Inborn genetic diseases [RCV002818871] Chr10:43558048 [GRCh38]
Chr10:44053496 [GRCh37]
Chr10:10q11.21		 likely benign
NM_001099282.2(ZNF239):c.199A>C (p.Lys67Gln) single nucleotide variant Inborn genetic diseases [RCV002865591] Chr10:43557881 [GRCh38]
Chr10:44053329 [GRCh37]
Chr10:10q11.21		 uncertain significance
NM_001099282.2(ZNF239):c.982T>G (p.Phe328Val) single nucleotide variant Inborn genetic diseases [RCV002869306] Chr10:43557098 [GRCh38]
Chr10:44052546 [GRCh37]
Chr10:10q11.21		 uncertain significance
NM_001099282.2(ZNF239):c.881A>G (p.Asp294Gly) single nucleotide variant Inborn genetic diseases [RCV002703703] Chr10:43557199 [GRCh38]
Chr10:44052647 [GRCh37]
Chr10:10q11.21		 uncertain significance
NM_001099282.2(ZNF239):c.895G>A (p.Gly299Ser) single nucleotide variant Inborn genetic diseases [RCV002887467] Chr10:43557185 [GRCh38]
Chr10:44052633 [GRCh37]
Chr10:10q11.21		 uncertain significance
NM_001099282.2(ZNF239):c.1163C>G (p.Ser388Trp) single nucleotide variant Inborn genetic diseases [RCV002691603] Chr10:43556917 [GRCh38]
Chr10:44052365 [GRCh37]
Chr10:10q11.21		 uncertain significance
NM_001099282.2(ZNF239):c.1304A>C (p.Lys435Thr) single nucleotide variant Inborn genetic diseases [RCV002768562] Chr10:43556776 [GRCh38]
Chr10:44052224 [GRCh37]
Chr10:10q11.21		 uncertain significance
NM_001099282.2(ZNF239):c.784C>G (p.Pro262Ala) single nucleotide variant Inborn genetic diseases [RCV002666194] Chr10:43557296 [GRCh38]
Chr10:44052744 [GRCh37]
Chr10:10q11.21		 uncertain significance
NM_001099282.2(ZNF239):c.991C>T (p.Arg331Cys) single nucleotide variant Inborn genetic diseases [RCV003003976] Chr10:43557089 [GRCh38]
Chr10:44052537 [GRCh37]
Chr10:10q11.21		 uncertain significance
NM_001099282.2(ZNF239):c.1040A>T (p.Tyr347Phe) single nucleotide variant Inborn genetic diseases [RCV002787851] Chr10:43557040 [GRCh38]
Chr10:44052488 [GRCh37]
Chr10:10q11.21		 uncertain significance
NM_001099282.2(ZNF239):c.800A>G (p.Lys267Arg) single nucleotide variant Inborn genetic diseases [RCV002669449] Chr10:43557280 [GRCh38]
Chr10:44052728 [GRCh37]
Chr10:10q11.21		 uncertain significance
NM_001099282.2(ZNF239):c.82T>G (p.Ser28Ala) single nucleotide variant Inborn genetic diseases [RCV002832095] Chr10:43557998 [GRCh38]
Chr10:44053446 [GRCh37]
Chr10:10q11.21		 uncertain significance
NM_001099282.2(ZNF239):c.1076G>A (p.Ser359Asn) single nucleotide variant Inborn genetic diseases [RCV002921600] Chr10:43557004 [GRCh38]
Chr10:44052452 [GRCh37]
Chr10:10q11.21		 uncertain significance
NM_001099282.2(ZNF239):c.533C>G (p.Pro178Arg) single nucleotide variant Inborn genetic diseases [RCV003174030] Chr10:43557547 [GRCh38]
Chr10:44052995 [GRCh37]
Chr10:10q11.21		 uncertain significance
NM_001099282.2(ZNF239):c.862G>A (p.Glu288Lys) single nucleotide variant Inborn genetic diseases [RCV003184455] Chr10:43557218 [GRCh38]
Chr10:44052666 [GRCh37]
Chr10:10q11.21		 uncertain significance
GRCh37/hg19 10p13-q26.3(chr10:12829206-135427143) copy number loss Distal 10q deletion syndrome [RCV003319583] Chr10:12829206..135427143 [GRCh37]
Chr10:10p13-q26.3		 pathogenic
GRCh37/hg19 10p14-q26.3(chr10:11138692-135427143) copy number gain Distal trisomy 10q [RCV003319593] Chr10:11138692..135427143 [GRCh37]
Chr10:10p14-q26.3		 pathogenic
GRCh37/hg19 10q11.21-24.2(chr10:42709645-100834951)x3 copy number gain not provided [RCV003484798] Chr10:42709645..100834951 [GRCh37]
Chr10:10q11.21-24.2		 pathogenic
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:867
Count of miRNA genes:263
Interacting mature miRNAs:270
Transcripts:ENST00000306006, ENST00000374446, ENST00000426961, ENST00000491188, ENST00000535642
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
RH79937  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371044,051,939 - 44,052,140UniSTSGRCh37
Build 361043,371,945 - 43,372,146RGDNCBI36
Celera1040,055,576 - 40,055,777RGD
Cytogenetic Map10q11.22-q11.23UniSTS
HuRef1040,579,292 - 40,579,493UniSTS
ZNF239__4989  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371044,051,757 - 44,052,742UniSTSGRCh37
GRCh371044,051,757 - 44,052,658UniSTSGRCh37
Build 361043,371,763 - 43,372,664RGDNCBI36
Celera1040,055,394 - 40,056,295RGD
Celera1040,055,394 - 40,056,379UniSTS
HuRef1040,579,110 - 40,580,011UniSTS
HuRef1040,579,110 - 40,580,095UniSTS
G17516  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371044,071,011 - 44,071,219UniSTSGRCh37
Build 361043,391,017 - 43,391,225RGDNCBI36
Celera1040,074,647 - 40,074,855RGD
Cytogenetic Map10q11.22-q11.23UniSTS
HuRef1040,598,350 - 40,598,558UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High
Medium 97 14 98 25 36 27 116 37 145 46 528 137 2 19
Low 2323 2190 1528 499 1177 342 3974 1976 3532 355 925 1441 168 1 1202 2658 5 2
Below cutoff 12 763 87 88 632 84 261 178 49 17 5 28 4 111 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001099282 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001099283 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001099284 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001324347 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001324348 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001324349 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001324350 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001324351 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001324352 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001324353 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_005674 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005271832 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006718001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006718003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011540232 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011540234 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011540235 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011540236 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011540237 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011540238 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017016740 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047425807 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047425808 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054366860 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054366861 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054366862 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054366863 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054366864 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054366865 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054366866 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054366867 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054366868 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK292013 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL450326 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC026030 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471160 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CK820210 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068268 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA597035 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA686973 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA937379 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DN994387 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X82125 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X82126 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X82128 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENST00000306006   ⟹   ENSP00000307774
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1043,556,344 - 43,568,459 (-)Ensembl
RefSeq Acc Id: ENST00000374446   ⟹   ENSP00000363569
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1043,556,344 - 43,574,616 (-)Ensembl
RefSeq Acc Id: ENST00000426961   ⟹   ENSP00000398202
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1043,556,347 - 43,574,618 (-)Ensembl
RefSeq Acc Id: ENST00000491188
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1043,557,529 - 43,574,597 (-)Ensembl
RefSeq Acc Id: ENST00000535642   ⟹   ENSP00000443907
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1043,556,347 - 43,574,618 (-)Ensembl
RefSeq Acc Id: NM_001099282   ⟹   NP_001092752
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381043,556,344 - 43,574,616 (-)NCBI
GRCh371044,051,792 - 44,070,066 (-)RGD
Build 361043,371,798 - 43,390,071 (-)NCBI Archive
Celera1040,055,429 - 40,073,702 (-)RGD
HuRef1040,579,145 - 40,597,405 (-)RGD
CHM1_11044,091,430 - 44,109,700 (-)NCBI
T2T-CHM13v2.01044,437,270 - 44,455,539 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001099283   ⟹   NP_001092753
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381043,556,344 - 43,574,616 (-)NCBI
GRCh371044,051,792 - 44,070,066 (-)RGD
Build 361043,371,798 - 43,390,072 (-)NCBI Archive
Celera1040,055,429 - 40,073,702 (-)RGD
HuRef1040,579,145 - 40,597,405 (-)RGD
CHM1_11044,091,430 - 44,109,701 (-)NCBI
T2T-CHM13v2.01044,437,270 - 44,455,539 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001099284   ⟹   NP_001092754
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381043,556,344 - 43,574,616 (-)NCBI
GRCh371044,051,792 - 44,070,066 (-)RGD
Build 361043,371,798 - 43,390,072 (-)NCBI Archive
Celera1040,055,429 - 40,073,702 (-)RGD
HuRef1040,579,145 - 40,597,405 (-)RGD
CHM1_11044,091,430 - 44,109,701 (-)NCBI
T2T-CHM13v2.01044,437,270 - 44,455,539 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001324347   ⟹   NP_001311276
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381043,556,344 - 43,574,616 (-)NCBI
CHM1_11044,091,430 - 44,109,701 (-)NCBI
T2T-CHM13v2.01044,437,270 - 44,455,539 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001324348   ⟹   NP_001311277
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381043,556,344 - 43,574,616 (-)NCBI
CHM1_11044,091,430 - 44,109,701 (-)NCBI
T2T-CHM13v2.01044,437,270 - 44,455,539 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001324349   ⟹   NP_001311278
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381043,556,344 - 43,574,616 (-)NCBI
CHM1_11044,091,430 - 44,109,701 (-)NCBI
T2T-CHM13v2.01044,437,270 - 44,455,539 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001324350   ⟹   NP_001311279
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381043,556,344 - 43,574,616 (-)NCBI
CHM1_11044,091,430 - 44,109,701 (-)NCBI
T2T-CHM13v2.01044,437,270 - 44,455,539 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001324351   ⟹   NP_001311280
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381043,556,344 - 43,574,616 (-)NCBI
CHM1_11044,091,430 - 44,109,701 (-)NCBI
T2T-CHM13v2.01044,437,270 - 44,455,539 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001324352   ⟹   NP_001311281
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381043,556,344 - 43,574,616 (-)NCBI
CHM1_11044,091,430 - 44,109,701 (-)NCBI
T2T-CHM13v2.01044,437,270 - 44,455,539 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001324353   ⟹   NP_001311282
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381043,556,344 - 43,574,616 (-)NCBI
CHM1_11044,091,430 - 44,109,701 (-)NCBI
T2T-CHM13v2.01044,437,270 - 44,455,539 (-)NCBI
Sequence:
RefSeq Acc Id: NM_005674   ⟹   NP_005665
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381043,556,344 - 43,568,459 (-)NCBI
GRCh371044,051,792 - 44,070,066 (-)RGD
Build 361043,371,798 - 43,383,913 (-)NCBI Archive
Celera1040,055,429 - 40,073,702 (-)RGD
HuRef1040,579,145 - 40,597,405 (-)RGD
CHM1_11044,091,430 - 44,103,542 (-)NCBI
T2T-CHM13v2.01044,437,270 - 44,449,382 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006718001   ⟹   XP_006718064
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381043,556,344 - 43,564,206 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006718003   ⟹   XP_006718066
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381043,556,344 - 43,574,285 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011540232   ⟹   XP_011538534
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381043,556,344 - 43,574,616 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011540234   ⟹   XP_011538536
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381043,556,344 - 43,574,616 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011540235   ⟹   XP_011538537
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381043,556,344 - 43,574,616 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011540236   ⟹   XP_011538538
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381043,556,344 - 43,574,286 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011540238   ⟹   XP_011538540
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381043,556,344 - 43,563,273 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017016740   ⟹   XP_016872229
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381043,556,344 - 43,574,616 (-)NCBI
Sequence:
RefSeq Acc Id: XM_047425807   ⟹   XP_047281763
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381043,556,344 - 43,574,616 (-)NCBI
RefSeq Acc Id: XM_047425808   ⟹   XP_047281764
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381043,556,344 - 43,574,507 (-)NCBI
RefSeq Acc Id: XM_054366860   ⟹   XP_054222835
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01044,437,270 - 44,455,539 (-)NCBI
RefSeq Acc Id: XM_054366861   ⟹   XP_054222836
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01044,437,270 - 44,455,430 (-)NCBI
RefSeq Acc Id: XM_054366862   ⟹   XP_054222837
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01044,437,270 - 44,445,130 (-)NCBI
RefSeq Acc Id: XM_054366863   ⟹   XP_054222838
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01044,437,270 - 44,455,539 (-)NCBI
RefSeq Acc Id: XM_054366864   ⟹   XP_054222839
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01044,437,270 - 44,455,539 (-)NCBI
RefSeq Acc Id: XM_054366865   ⟹   XP_054222840
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01044,437,270 - 44,455,209 (-)NCBI
RefSeq Acc Id: XM_054366866   ⟹   XP_054222841
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01044,437,270 - 44,455,539 (-)NCBI
RefSeq Acc Id: XM_054366867   ⟹   XP_054222842
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01044,437,270 - 44,455,208 (-)NCBI
RefSeq Acc Id: XM_054366868   ⟹   XP_054222843
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01044,437,270 - 44,444,197 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001092752 (Get FASTA)   NCBI Sequence Viewer  
  NP_001092753 (Get FASTA)   NCBI Sequence Viewer  
  NP_001092754 (Get FASTA)   NCBI Sequence Viewer  
  NP_001311276 (Get FASTA)   NCBI Sequence Viewer  
  NP_001311277 (Get FASTA)   NCBI Sequence Viewer  
  NP_001311278 (Get FASTA)   NCBI Sequence Viewer  
  NP_001311279 (Get FASTA)   NCBI Sequence Viewer  
  NP_001311280 (Get FASTA)   NCBI Sequence Viewer  
  NP_001311281 (Get FASTA)   NCBI Sequence Viewer  
  NP_001311282 (Get FASTA)   NCBI Sequence Viewer  
  NP_005665 (Get FASTA)   NCBI Sequence Viewer  
  XP_006718064 (Get FASTA)   NCBI Sequence Viewer  
  XP_006718066 (Get FASTA)   NCBI Sequence Viewer  
  XP_011538534 (Get FASTA)   NCBI Sequence Viewer  
  XP_011538536 (Get FASTA)   NCBI Sequence Viewer  
  XP_011538537 (Get FASTA)   NCBI Sequence Viewer  
  XP_011538538 (Get FASTA)   NCBI Sequence Viewer  
  XP_011538540 (Get FASTA)   NCBI Sequence Viewer  
  XP_016872229 (Get FASTA)   NCBI Sequence Viewer  
  XP_047281763 (Get FASTA)   NCBI Sequence Viewer  
  XP_047281764 (Get FASTA)   NCBI Sequence Viewer  
  XP_054222835 (Get FASTA)   NCBI Sequence Viewer  
  XP_054222836 (Get FASTA)   NCBI Sequence Viewer  
  XP_054222837 (Get FASTA)   NCBI Sequence Viewer  
  XP_054222838 (Get FASTA)   NCBI Sequence Viewer  
  XP_054222839 (Get FASTA)   NCBI Sequence Viewer  
  XP_054222840 (Get FASTA)   NCBI Sequence Viewer  
  XP_054222841 (Get FASTA)   NCBI Sequence Viewer  
  XP_054222842 (Get FASTA)   NCBI Sequence Viewer  
  XP_054222843 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH26030 (Get FASTA)   NCBI Sequence Viewer  
  BAF84702 (Get FASTA)   NCBI Sequence Viewer  
  CAA57637 (Get FASTA)   NCBI Sequence Viewer  
  CAA57638 (Get FASTA)   NCBI Sequence Viewer  
  EAW86602 (Get FASTA)   NCBI Sequence Viewer  
  EAW86603 (Get FASTA)   NCBI Sequence Viewer  
  EAW86604 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSP00000307774
  ENSP00000307774.6
  ENSP00000363569
  ENSP00000363569.1
  ENSP00000398202
  ENSP00000398202.1
  ENSP00000443907
  ENSP00000443907.1
GenBank Protein Q16600 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: NP_001092753   ⟸   NM_001099283
- Peptide Label: isoform a
- UniProtKB: Q5T1G9 (UniProtKB/Swiss-Prot),   Q8TAS5 (UniProtKB/Swiss-Prot),   Q16600 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001092754   ⟸   NM_001099284
- Peptide Label: isoform a
- UniProtKB: Q5T1G9 (UniProtKB/Swiss-Prot),   Q8TAS5 (UniProtKB/Swiss-Prot),   Q16600 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001092752   ⟸   NM_001099282
- Peptide Label: isoform a
- UniProtKB: Q5T1G9 (UniProtKB/Swiss-Prot),   Q8TAS5 (UniProtKB/Swiss-Prot),   Q16600 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_005665   ⟸   NM_005674
- Peptide Label: isoform a
- UniProtKB: Q5T1G9 (UniProtKB/Swiss-Prot),   Q8TAS5 (UniProtKB/Swiss-Prot),   Q16600 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006718066   ⟸   XM_006718003
- Peptide Label: isoform X5
- UniProtKB: Q5T1G9 (UniProtKB/Swiss-Prot),   Q8TAS5 (UniProtKB/Swiss-Prot),   Q16600 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006718064   ⟸   XM_006718001
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_011538536   ⟸   XM_011540234
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_011538537   ⟸   XM_011540235
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_011538538   ⟸   XM_011540236
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_011538534   ⟸   XM_011540232
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_011538540   ⟸   XM_011540238
- Peptide Label: isoform X5
- UniProtKB: Q5T1G9 (UniProtKB/Swiss-Prot),   Q8TAS5 (UniProtKB/Swiss-Prot),   Q16600 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001311276   ⟸   NM_001324347
- Peptide Label: isoform a
- UniProtKB: Q5T1G9 (UniProtKB/Swiss-Prot),   Q8TAS5 (UniProtKB/Swiss-Prot),   Q16600 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001311281   ⟸   NM_001324352
- Peptide Label: isoform b
- Sequence:
RefSeq Acc Id: NP_001311282   ⟸   NM_001324353
- Peptide Label: isoform c
- Sequence:
RefSeq Acc Id: NP_001311277   ⟸   NM_001324348
- Peptide Label: isoform a
- UniProtKB: Q5T1G9 (UniProtKB/Swiss-Prot),   Q8TAS5 (UniProtKB/Swiss-Prot),   Q16600 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001311280   ⟸   NM_001324351
- Peptide Label: isoform a
- UniProtKB: Q5T1G9 (UniProtKB/Swiss-Prot),   Q8TAS5 (UniProtKB/Swiss-Prot),   Q16600 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001311279   ⟸   NM_001324350
- Peptide Label: isoform a
- UniProtKB: Q5T1G9 (UniProtKB/Swiss-Prot),   Q8TAS5 (UniProtKB/Swiss-Prot),   Q16600 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001311278   ⟸   NM_001324349
- Peptide Label: isoform a
- UniProtKB: Q5T1G9 (UniProtKB/Swiss-Prot),   Q8TAS5 (UniProtKB/Swiss-Prot),   Q16600 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_016872229   ⟸   XM_017016740
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: ENSP00000307774   ⟸   ENST00000306006
RefSeq Acc Id: ENSP00000398202   ⟸   ENST00000426961
RefSeq Acc Id: ENSP00000363569   ⟸   ENST00000374446
RefSeq Acc Id: ENSP00000443907   ⟸   ENST00000535642
RefSeq Acc Id: XP_047281763   ⟸   XM_047425807
- Peptide Label: isoform X1
RefSeq Acc Id: XP_047281764   ⟸   XM_047425808
- Peptide Label: isoform X2
RefSeq Acc Id: XP_054222838   ⟸   XM_054366863
- Peptide Label: isoform X3
RefSeq Acc Id: XP_054222839   ⟸   XM_054366864
- Peptide Label: isoform X3
RefSeq Acc Id: XP_054222841   ⟸   XM_054366866
- Peptide Label: isoform X3
RefSeq Acc Id: XP_054222835   ⟸   XM_054366860
- Peptide Label: isoform X1
RefSeq Acc Id: XP_054222836   ⟸   XM_054366861
- Peptide Label: isoform X2
RefSeq Acc Id: XP_054222840   ⟸   XM_054366865
- Peptide Label: isoform X3
RefSeq Acc Id: XP_054222842   ⟸   XM_054366867
- Peptide Label: isoform X5
- UniProtKB: Q5T1G9 (UniProtKB/Swiss-Prot),   Q16600 (UniProtKB/Swiss-Prot),   Q8TAS5 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_054222837   ⟸   XM_054366862
- Peptide Label: isoform X4
RefSeq Acc Id: XP_054222843   ⟸   XM_054366868
- Peptide Label: isoform X5
- UniProtKB: Q5T1G9 (UniProtKB/Swiss-Prot),   Q16600 (UniProtKB/Swiss-Prot),   Q8TAS5 (UniProtKB/Swiss-Prot)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q16600-F1-model_v2 AlphaFold Q16600 1-458 view protein structure

Promoters
RGD ID:6788393
Promoter ID:HG_KWN:9256
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   HeLa_S3,   K562,   Lymphoblastoid
Transcripts:ENST00000374446,   NM_001099283,   NM_001099284,   UC001JAX.2
Position:
Human AssemblyChrPosition (strand)Source
Build 361043,389,791 - 43,390,291 (-)MPROMDB
RGD ID:7217403
Promoter ID:EPDNEW_H14447
Type:initiation region
Name:ZNF239_1
Description:zinc finger protein 239
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381043,574,585 - 43,574,645EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:13031 AgrOrtholog
COSMIC ZNF239 COSMIC
Ensembl Genes ENSG00000196793 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENST00000306006 ENTREZGENE
  ENST00000306006.10 UniProtKB/Swiss-Prot
  ENST00000374446 ENTREZGENE
  ENST00000374446.7 UniProtKB/Swiss-Prot
  ENST00000426961 ENTREZGENE
  ENST00000426961.1 UniProtKB/Swiss-Prot
  ENST00000535642 ENTREZGENE
  ENST00000535642.5 UniProtKB/Swiss-Prot
Gene3D-CATH Classic Zinc Finger UniProtKB/Swiss-Prot
GTEx ENSG00000196793 GTEx
HGNC ID HGNC:13031 ENTREZGENE
Human Proteome Map ZNF239 Human Proteome Map
InterPro Znf_C2H2_sf UniProtKB/Swiss-Prot
  Znf_C2H2_type UniProtKB/Swiss-Prot
KEGG Report hsa:8187 UniProtKB/Swiss-Prot
NCBI Gene 8187 ENTREZGENE
OMIM 601069 OMIM
PANTHER ZINC FINGER PROTEIN UniProtKB/Swiss-Prot
  ZINC FINGER PROTEIN 485 UniProtKB/Swiss-Prot
Pfam zf-C2H2 UniProtKB/Swiss-Prot
PharmGKB PA37609 PharmGKB
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/Swiss-Prot
  ZINC_FINGER_C2H2_2 UniProtKB/Swiss-Prot
SMART ZnF_C2H2 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF57667 UniProtKB/Swiss-Prot
UniProt Q16600 ENTREZGENE
  Q5T1G9 ENTREZGENE
  Q8TAS5 ENTREZGENE
  ZN239_HUMAN UniProtKB/Swiss-Prot
UniProt Secondary Q5T1G9 UniProtKB/Swiss-Prot
  Q8TAS5 UniProtKB/Swiss-Prot