COL4A5 (collagen type IV alpha 5 chain) - Rat Genome Database
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Gene: COL4A5 (collagen type IV alpha 5 chain) Homo sapiens
Analyze
Symbol: COL4A5
Name: collagen type IV alpha 5 chain
RGD ID: 1351504
HGNC Page HGNC
Description: An extracellular matrix structural constituent conferring tensile strength. Predicted to be involved in extracellular matrix organization. Localizes to collagen-containing extracellular matrix. Implicated in Alport syndrome and X-linked Alport syndrome.
Type: protein-coding
RefSeq Status: REVIEWED
Also known as: ASLN; ATS; ATS1; CA54; collagen alpha-5(IV) chain; collagen IV, alpha-5 polypeptide; collagen of basement membrane, alpha-5 chain; collagen type IV alpha 5; collagen, type IV, alpha 5; dA149D17.3; dA24A23.1; DKFZp686G1497; MGC167109; MGC42377
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 EnsemblX108,439,838 - 108,697,545 (+)EnsemblGRCh38hg38GRCh38
GRCh38.p13 EnsemblX108,439,844 - 108,697,545 (+)EnsemblGRCh38hg38GRCh38
GRCh38X108,439,838 - 108,697,545 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37X107,683,068 - 107,940,775 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X107,569,810 - 107,827,431 (+)NCBINCBI36hg18NCBI36
Build 34X107,489,298 - 107,746,920NCBI
CeleraX108,154,585 - 108,412,194 (+)NCBI
Cytogenetic MapXq22.3NCBI
HuRefX97,304,982 - 97,564,656 (+)NCBIHuRef
CHM1_1X107,593,900 - 107,851,643 (+)NCBICHM1_1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
Achalasia  (IAGP)
Anterior lenticonus  (IAGP)
Aspiration pneumonia  (IAGP)
Cataract  (IAGP)
Corneal erosion  (IAGP)
Cough  (IAGP)
Developmental cataract  (IAGP)
Diffuse leiomyomatosis  (IAGP)
Downslanted palpebral fissures  (IAGP)
Dyspepsia  (IAGP)
Dysphagia  (IAGP)
Dyspnea  (IAGP)
Esophageal neoplasm  (IAGP)
Esophageal stenosis  (IAGP)
Failure to thrive  (IAGP)
Fibroma  (IAGP)
Focal segmental glomerulosclerosis  (IAGP)
Gastroesophageal reflux  (IAGP)
Glomerular basement membrane lamellation  (IAGP)
Glomerulopathy  (IAGP)
Hearing impairment  (IAGP)
Hematuria  (IAGP)
Heterogeneous  (IAGP)
Hypertension  (IAGP)
Hypoparathyroidism  (IAGP)
Ichthyosis  (IAGP)
Increased blood pressure  (IAGP)
Keratitis  (IAGP)
Lenticonus  (IAGP)
Microscopic hematuria  (IAGP)
Mild proteinuria  (IAGP)
Myopia  (IAGP)
Nasogastric tube feeding  (IAGP)
Nephritis  (IAGP)
Nephropathy  (IAGP)
Nephrotic syndrome  (IAGP)
Precordial pain  (IAGP)
Progressive  (IAGP)
Proteinuria  (IAGP)
Recurrent respiratory infections  (IAGP)
Renal insufficiency  (IAGP)
Schizophrenia  (IAGP)
Sensorineural hearing impairment  (IAGP)
Smooth muscle antibody positivity  (IAGP)
Stage 5 chronic kidney disease  (IAGP)
Steroid-resistant nephrotic syndrome  (IAGP)
Thickened glomerular basement membrane  (IAGP)
Thrombocytopenia  (IAGP)
Tracheobronchial leiomyomatosis  (IAGP)
Unilateral deafness  (IAGP)
Uterine neoplasm  (IAGP)
Vaginal neoplasm  (IAGP)
Vomiting  (IAGP)
Vulvar neoplasm  (IAGP)
Weight loss  (IAGP)
X-linked dominant inheritance  (IAGP)
X-linked inheritance  (IAGP)
References

Additional References at PubMed
PMID:1352287   PMID:1363780   PMID:1376965   PMID:1377218   PMID:1672282   PMID:1689491   PMID:1724753   PMID:2004755   PMID:2339699   PMID:2380186   PMID:2426947   PMID:3997552  
PMID:6386565   PMID:6389236   PMID:6811420   PMID:6988303   PMID:7495302   PMID:7500359   PMID:7599631   PMID:7853788   PMID:8006028   PMID:8081393   PMID:8120014   PMID:8301933  
PMID:8356449   PMID:8406498   PMID:8651292   PMID:8651296   PMID:8829632   PMID:8889548   PMID:8940267   PMID:9136074   PMID:9150741   PMID:9195222   PMID:9452056   PMID:9506531  
PMID:9673377   PMID:9878537   PMID:10094548   PMID:10382266   PMID:10416788   PMID:10561141   PMID:10563487   PMID:10684360   PMID:10752524   PMID:10862091   PMID:11004279   PMID:11051113  
PMID:11198602   PMID:11223851   PMID:11462238   PMID:11683410   PMID:11711546   PMID:11961405   PMID:12021518   PMID:12105244   PMID:12180907   PMID:12218303   PMID:12477932   PMID:12478350  
PMID:12732331   PMID:12796257   PMID:12878203   PMID:14514738   PMID:14531812   PMID:14592452   PMID:14993485   PMID:15149316   PMID:15211113   PMID:15365990   PMID:15583824   PMID:15780079  
PMID:15954103   PMID:16169070   PMID:16284948   PMID:16344560   PMID:16507901   PMID:16613845   PMID:16940319   PMID:16941480   PMID:17277342   PMID:17294221   PMID:17396119   PMID:17554254  
PMID:18083113   PMID:18616531   PMID:18706356   PMID:18930919   PMID:19065523   PMID:19281745   PMID:19322201   PMID:19610672   PMID:19728970   PMID:19913121   PMID:19919694   PMID:19965530  
PMID:20301386   PMID:20378821   PMID:20452482   PMID:20574986   PMID:20628086   PMID:20673868   PMID:20881942   PMID:20951201   PMID:21143337   PMID:21187648   PMID:21332469   PMID:21380622  
PMID:21848006   PMID:21873635   PMID:21900206   PMID:21942715   PMID:22335431   PMID:22919268   PMID:23085274   PMID:23551189   PMID:24033287   PMID:24043717   PMID:24304881   PMID:24337245  
PMID:24366813   PMID:24522658   PMID:24742657   PMID:25110662   PMID:25183659   PMID:25307721   PMID:25572247   PMID:25575550   PMID:25633161   PMID:25739341   PMID:25840998   PMID:25992553  
PMID:26179878   PMID:26346198   PMID:26496610   PMID:26581810   PMID:26866448   PMID:27377778   PMID:27576055   PMID:27796712   PMID:27859054   PMID:28275241   PMID:28344315   PMID:28514442  
PMID:28542346   PMID:28604958   PMID:28611215   PMID:28632965   PMID:28675934   PMID:28704582   PMID:28827396   PMID:30293132   PMID:30577881   PMID:30647093   PMID:30661074   PMID:30691124  
PMID:31209800   PMID:31481700   PMID:31576025   PMID:31901041   PMID:32296183   PMID:32659759   PMID:32761583   PMID:33144651  


Genomics

Comparative Map Data
COL4A5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 EnsemblX108,439,838 - 108,697,545 (+)EnsemblGRCh38hg38GRCh38
GRCh38.p13 EnsemblX108,439,844 - 108,697,545 (+)EnsemblGRCh38hg38GRCh38
GRCh38X108,439,838 - 108,697,545 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37X107,683,068 - 107,940,775 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X107,569,810 - 107,827,431 (+)NCBINCBI36hg18NCBI36
Build 34X107,489,298 - 107,746,920NCBI
CeleraX108,154,585 - 108,412,194 (+)NCBI
Cytogenetic MapXq22.3NCBI
HuRefX97,304,982 - 97,564,656 (+)NCBIHuRef
CHM1_1X107,593,900 - 107,851,643 (+)NCBICHM1_1
Col4a5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X140,258,367 - 140,472,232 (+)NCBIGRCm39mm39
GRCm39 EnsemblX140,258,381 - 140,472,230 (+)Ensembl
GRCm38X141,475,370 - 141,689,236 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX141,475,385 - 141,689,234 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X137,909,962 - 138,123,778 (+)NCBIGRCm37mm9NCBIm37
MGSCv36X136,721,787 - 136,935,548 (+)NCBImm8
CeleraX125,485,537 - 125,689,734 (+)NCBICelera
Cytogenetic MapXF2NCBI
cM MapX62.16NCBI
Col4a5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2X105,118,762 - 105,322,699 (+)NCBI
Rnor_6.0 EnsemblX112,769,645 - 112,983,685 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0X112,769,595 - 112,983,720 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0X111,226,503 - 111,437,171 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X36,918,697 - 37,130,659 (-)NCBIRGSC3.4rn4RGSC3.4
CeleraX104,529,279 - 104,731,865 (+)NCBICelera
Cytogenetic MapXq33NCBI
Col4a5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554907,168,676 - 7,409,887 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554907,168,725 - 7,409,655 (-)NCBIChiLan1.0ChiLan1.0
COL4A5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1X107,908,812 - 108,166,580 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX108,008,689 - 108,166,095 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0X97,538,978 - 97,797,019 (+)NCBIMhudiblu_PPA_v0panPan3
COL4A5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X81,982,119 - 82,248,428 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX81,982,275 - 82,247,679 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX68,102,838 - 68,368,300 (+)NCBI
ROS_Cfam_1.0X83,631,540 - 83,897,969 (+)NCBI
UMICH_Zoey_3.1X81,090,795 - 81,356,504 (+)NCBI
UNSW_CanFamBas_1.0X82,803,355 - 83,068,810 (+)NCBI
UU_Cfam_GSD_1.0X82,590,448 - 82,853,593 (+)NCBI
Col4a5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X81,297,280 - 81,514,238 (+)NCBI
SpeTri2.0NW_0049364996,143,736 - 6,360,565 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
COL4A5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX88,958,825 - 89,183,374 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X88,958,837 - 89,183,306 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X103,651,986 - 103,716,022 (-)NCBISscrofa10.2Sscrofa10.2susScr3
COL4A5
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X96,307,927 - 96,570,592 (+)NCBI
Col4a5
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248037,509,877 - 7,916,365 (-)NCBI

Position Markers
DXS7887  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37X107,901,568 - 107,901,723UniSTSGRCh37
Build 36X107,788,224 - 107,788,379RGDNCBI36
CeleraX108,372,987 - 108,373,142RGD
Cytogenetic MapXq22UniSTS
HuRefX97,524,793 - 97,524,948UniSTS
DXS7886  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37X107,729,357 - 107,729,486UniSTSGRCh37
Build 36X107,616,013 - 107,616,142RGDNCBI36
CeleraX108,200,788 - 108,200,917RGD
Cytogenetic MapXq22UniSTS
HuRefX97,352,432 - 97,352,561UniSTS
GDB:600958  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37X107,683,214 - 107,683,365UniSTSGRCh37
Build 36X107,569,870 - 107,570,021RGDNCBI36
CeleraX108,154,645 - 108,154,796RGD
Cytogenetic MapXq22UniSTS
HuRefX97,305,122 - 97,305,273UniSTS
DXS7815  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37X107,864,742 - 107,864,946UniSTSGRCh37
Build 36X107,751,398 - 107,751,602RGDNCBI36
CeleraX108,336,161 - 108,336,365RGD
Cytogenetic MapXq22UniSTS
HuRefX97,487,826 - 97,488,030UniSTS
GDB:192502  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37X107,865,948 - 107,866,027UniSTSGRCh37
Build 36X107,752,604 - 107,752,683RGDNCBI36
CeleraX108,337,367 - 108,337,446RGD
Cytogenetic MapXq22UniSTS
HuRefX97,489,005 - 97,489,084UniSTS
DXS137  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37X107,686,665 - 107,686,862UniSTSGRCh37
Build 36X107,573,321 - 107,573,518RGDNCBI36
CeleraX108,158,096 - 108,158,293RGD
Cytogenetic MapXq22UniSTS
HuRefX97,308,570 - 97,308,767UniSTS
COL4A5  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37X107,867,439 - 107,867,577UniSTSGRCh37
Build 36X107,754,095 - 107,754,233RGDNCBI36
CeleraX108,338,858 - 108,338,996RGD
Cytogenetic MapXq22UniSTS
HuRefX97,490,496 - 97,490,634UniSTS
COL4A6  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37X107,682,614 - 107,682,692UniSTSGRCh37
Build 36X107,569,270 - 107,569,348RGDNCBI36
CeleraX108,154,045 - 108,154,123RGD
Cytogenetic MapXq22UniSTS
HuRefX97,304,522 - 97,304,600UniSTS
GDB:196581  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37X107,937,227 - 107,937,348UniSTSGRCh37
Build 36X107,823,883 - 107,824,004RGDNCBI36
CeleraX108,408,646 - 108,408,767RGD
Cytogenetic MapXq22UniSTS
HuRefX97,561,114 - 97,561,229UniSTS
GDB:438123  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37X107,867,438 - 107,867,582UniSTSGRCh37
Build 36X107,754,094 - 107,754,238RGDNCBI36
CeleraX108,338,857 - 108,339,001RGD
Cytogenetic MapXq22UniSTS
HuRefX97,490,495 - 97,490,639UniSTS
BKT38  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37X107,782,288 - 107,783,063UniSTSGRCh37
Build 36X107,668,944 - 107,669,719RGDNCBI36
CeleraX108,253,711 - 108,254,486RGD
Cytogenetic MapXq22UniSTS
HuRefX97,405,103 - 97,405,878UniSTS
BKT39  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37X107,801,720 - 107,802,588UniSTSGRCh37
Build 36X107,688,376 - 107,689,244RGDNCBI36
CeleraX108,273,143 - 108,274,011RGD
Cytogenetic MapXq22UniSTS
HuRefX97,425,019 - 97,425,887UniSTS
BKT40  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37X107,839,935 - 107,840,944UniSTSGRCh37
Build 36X107,726,591 - 107,727,600RGDNCBI36
CeleraX108,311,357 - 108,312,366RGD
Cytogenetic MapXq22UniSTS
HuRefX97,462,907 - 97,463,916UniSTS
BKT41  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37X107,868,755 - 107,869,705UniSTSGRCh37
Build 36X107,755,411 - 107,756,361RGDNCBI36
CeleraX108,340,174 - 108,341,124RGD
Cytogenetic MapXq22UniSTS
BKT42  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37X107,937,957 - 107,938,973UniSTSGRCh37
Build 36X107,824,613 - 107,825,629RGDNCBI36
CeleraX108,409,376 - 108,410,392RGD
Cytogenetic MapXq22UniSTS
HuRefX97,561,838 - 97,562,854UniSTS
COL4A5_1596  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37X107,940,075 - 107,940,959UniSTSGRCh37
Build 36X107,826,731 - 107,827,615RGDNCBI36
CeleraX108,411,494 - 108,412,380RGD
HuRefX97,563,956 - 97,564,842UniSTS
AF020129  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37X107,919,676 - 107,919,758UniSTSGRCh37
Build 36X107,806,332 - 107,806,414RGDNCBI36
CeleraX108,391,095 - 108,391,177RGD
Cytogenetic MapXq22UniSTS
HuRefX97,543,346 - 97,543,428UniSTS
WI-7137  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37X107,940,562 - 107,940,903UniSTSGRCh37
Build 36X107,827,218 - 107,827,559RGDNCBI36
CeleraX108,411,981 - 108,412,322RGD
Cytogenetic MapXq22UniSTS
HuRefX97,564,443 - 97,564,784UniSTS
GeneMap99-GB4 RH MapX293.07UniSTS
Whitehead-RH MapX269.8UniSTS
NCBI RH MapX561.2UniSTS
G10713  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37X107,939,618 - 107,939,778UniSTSGRCh37
Build 36X107,826,274 - 107,826,434RGDNCBI36
CeleraX108,411,037 - 108,411,197RGD
Cytogenetic MapXq22UniSTS
HuRefX97,563,499 - 97,563,659UniSTS
SHGC-36895  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37X107,869,640 - 107,869,764UniSTSGRCh37
Build 36X107,756,296 - 107,756,420RGDNCBI36
CeleraX108,341,059 - 108,341,183RGD
Cytogenetic MapXq22UniSTS
HuRefX97,492,474 - 97,492,598UniSTS
Stanford-G3 RH MapX3628.0UniSTS
NCBI RH MapX561.2UniSTS
GeneMap99-G3 RH MapX3764.0UniSTS
DXS6802  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37X107,749,535 - 107,749,814UniSTSGRCh37
Build 36X107,636,191 - 107,636,470RGDNCBI36
CeleraX108,220,965 - 108,221,238RGD
Cytogenetic MapXq22UniSTS
HuRefX97,372,475 - 97,372,746UniSTS
Whitehead-RH MapX269.0UniSTS
NCBI RH MapX561.2UniSTS
RH45245  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37X107,923,360 - 107,923,552UniSTSGRCh37
Build 36X107,810,016 - 107,810,208RGDNCBI36
CeleraX108,394,779 - 108,394,971RGD
Cytogenetic MapXq22UniSTS
HuRefX97,547,030 - 97,547,222UniSTS
GeneMap99-GB4 RH MapX293.07UniSTS
NCBI RH MapX561.2UniSTS

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2986
Count of miRNA genes:981
Interacting mature miRNAs:1166
Transcripts:ENST00000328300, ENST00000361603, ENST00000470339, ENST00000477429, ENST00000483338, ENST00000489230, ENST00000504541, ENST00000505728, ENST00000510690, ENST00000515658
Prediction methods:Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 1288 1377 922 56 106 23 2664 936 1329 137 1095 1119 43 394 1636 1
Low 1041 814 679 448 499 321 1649 1202 2351 243 337 428 128 808 1149 2
Below cutoff 30 743 109 108 917 109 27 45 28 34 9 24 2 3

Sequence

Nucleotide Sequences
RefSeq Transcripts NG_011977 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_000495 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_033380 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011530849 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017029259 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017029260 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017029261 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017029262 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017029263 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB839033 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB839034 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB839035 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AH002550 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AH006316 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK294066 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK307900 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK311302 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL031622 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL034369 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL035425 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL136364 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC035387 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC151846 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BU688037 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX641049 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471120 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA461056 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KF459303 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KM282618 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M31115 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M58526 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M90464 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  S59334 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  S69168 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  S71779 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  S75903 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X71745 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z37153 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENST00000328300   ⟹   ENSP00000331902
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 EnsemblX108,439,838 - 108,697,545 (+)Ensembl
RefSeq Acc Id: ENST00000361603   ⟹   ENSP00000354505
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 EnsemblX108,439,924 - 108,697,545 (+)Ensembl
RefSeq Acc Id: ENST00000470339
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 EnsemblX108,439,942 - 108,569,035 (+)Ensembl
RefSeq Acc Id: ENST00000477429
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 EnsemblX108,439,844 - 108,443,091 (+)Ensembl
RefSeq Acc Id: ENST00000483338   ⟹   ENSP00000495685
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 EnsemblX108,582,492 - 108,627,269 (+)Ensembl
RefSeq Acc Id: ENST00000489230
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 EnsemblX108,670,035 - 108,687,500 (+)Ensembl
RefSeq Acc Id: ENST00000504541   ⟹   ENSP00000424845
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 EnsemblX108,692,822 - 108,696,936 (+)Ensembl
RefSeq Acc Id: ENST00000505728   ⟹   ENSP00000424137
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 EnsemblX108,622,676 - 108,626,555 (+)Ensembl
RefSeq Acc Id: ENST00000510690
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 EnsemblX108,674,452 - 108,696,389 (+)Ensembl
RefSeq Acc Id: ENST00000515658   ⟹   ENSP00000423520
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 EnsemblX108,681,877 - 108,696,762 (+)Ensembl
RefSeq Acc Id: ENST00000642185   ⟹   ENSP00000495101
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 EnsemblX108,439,926 - 108,463,002 (+)Ensembl
RefSeq Acc Id: ENST00000644079
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 EnsemblX108,693,615 - 108,697,529 (+)Ensembl
RefSeq Acc Id: NM_000495   ⟹   NP_000486
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38X108,439,838 - 108,697,545 (+)NCBI
GRCh37X107,683,019 - 107,940,775 (+)NCBI
Build 36X107,569,810 - 107,827,431 (+)NCBI Archive
HuRefX97,304,982 - 97,564,656 (+)NCBI
CHM1_1X107,593,900 - 107,851,643 (+)NCBI
Sequence:
RefSeq Acc Id: NM_033380   ⟹   NP_203699
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38X108,439,838 - 108,697,545 (+)NCBI
GRCh37X107,683,019 - 107,940,775 (+)NCBI
Build 36X107,569,810 - 107,827,431 (+)NCBI Archive
HuRefX97,304,982 - 97,564,656 (+)NCBI
CHM1_1X107,593,900 - 107,851,643 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011530849   ⟹   XP_011529151
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38X108,534,528 - 108,697,544 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017029259   ⟹   XP_016884748
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38X108,534,528 - 108,697,531 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017029260   ⟹   XP_016884749
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38X108,534,528 - 108,697,531 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017029261   ⟹   XP_016884750
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38X108,534,528 - 108,680,650 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017029262   ⟹   XP_016884751
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38X108,534,528 - 108,670,820 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017029263   ⟹   XP_016884752
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38X108,582,878 - 108,697,531 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_000486 (Get FASTA)   NCBI Sequence Viewer  
  NP_203699 (Get FASTA)   NCBI Sequence Viewer  
  XP_011529151 (Get FASTA)   NCBI Sequence Viewer  
  XP_016884748 (Get FASTA)   NCBI Sequence Viewer  
  XP_016884749 (Get FASTA)   NCBI Sequence Viewer  
  XP_016884750 (Get FASTA)   NCBI Sequence Viewer  
  XP_016884751 (Get FASTA)   NCBI Sequence Viewer  
  XP_016884752 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA51558 (Get FASTA)   NCBI Sequence Viewer  
  AAA52045 (Get FASTA)   NCBI Sequence Viewer  
  AAA52046 (Get FASTA)   NCBI Sequence Viewer  
  AAA99480 (Get FASTA)   NCBI Sequence Viewer  
  AAB31853 (Get FASTA)   NCBI Sequence Viewer  
  AAB33374 (Get FASTA)   NCBI Sequence Viewer  
  AAC27816 (Get FASTA)   NCBI Sequence Viewer  
  AAC60612 (Get FASTA)   NCBI Sequence Viewer  
  AAD13909 (Get FASTA)   NCBI Sequence Viewer  
  AAF66217 (Get FASTA)   NCBI Sequence Viewer  
  AAH35387 (Get FASTA)   NCBI Sequence Viewer  
  AAI51847 (Get FASTA)   NCBI Sequence Viewer  
  AIW39922 (Get FASTA)   NCBI Sequence Viewer  
  BAG57411 (Get FASTA)   NCBI Sequence Viewer  
  CAA85512 (Get FASTA)   NCBI Sequence Viewer  
  EAX02683 (Get FASTA)   NCBI Sequence Viewer  
  EAX02684 (Get FASTA)   NCBI Sequence Viewer  
  EAX02685 (Get FASTA)   NCBI Sequence Viewer  
  EAX02686 (Get FASTA)   NCBI Sequence Viewer  
  P29400 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_203699   ⟸   NM_033380
- Peptide Label: isoform 2 precursor
- UniProtKB: P29400 (UniProtKB/Swiss-Prot),   A7MBN3 (UniProtKB/TrEMBL),   Q49AM6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_000486   ⟸   NM_000495
- Peptide Label: isoform 1 precursor
- UniProtKB: P29400 (UniProtKB/Swiss-Prot),   A7MBN3 (UniProtKB/TrEMBL),   Q49AM6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011529151   ⟸   XM_011530849
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_016884749   ⟸   XM_017029260
- Peptide Label: isoform X3
- Sequence: