OR13C6P (olfactory receptor family 13 subfamily C member 6 pseudogene) - Rat Genome Database

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Gene: OR13C6P (olfactory receptor family 13 subfamily C member 6 pseudogene) Homo sapiens
Analyze
Symbol: OR13C6P
Name: olfactory receptor family 13 subfamily C member 6 pseudogene
RGD ID: 1351391
HGNC Page HGNC:15101
Description: Predicted to enable olfactory receptor activity. Predicted to be involved in detection of chemical stimulus involved in sensory perception of smell. Predicted to be located in membrane. Predicted to be active in plasma membrane.
Type: pseudo (Ensembl: unprocessed_pseudogene)
RefSeq Status: INFERRED
Previously known as: OR37B
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38935,991,339 - 35,992,285 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl935,991,336 - 35,992,285 (-)EnsemblGRCh38hg38GRCh38
GRCh37935,991,336 - 35,992,282 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36935,981,236 - 35,982,382 (-)NCBINCBI36Build 36hg18NCBI36
Celera935,924,887 - 35,925,833 (-)NCBICelera
Cytogenetic Map9p13.3NCBI
HuRef935,945,070 - 35,946,007 (-)NCBIHuRef
CHM1_1935,991,594 - 35,992,531 (-)NCBICHM1_1
T2T-CHM13v2.0936,013,018 - 36,013,964 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA)
plasma membrane  (IBA,IEA)

Molecular Function

References
Additional References at PubMed
PMID:12906860   PMID:21873635  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:194
Count of miRNA genes:189
Interacting mature miRNAs:194
Transcripts:ENST00000433495
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 4 36 30 7 4 6 3 33
Below cutoff 611 640 169 28 106 13 1125 863 492 48 325 272 15 429 829

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000433495
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl935,991,336 - 35,992,285 (-)Ensembl
Protein Sequences
GenBank Protein Q8NH95 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8NH95-F1-model_v2 AlphaFold Q8NH95 1-151 view protein structure


Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:15101 AgrOrtholog
COSMIC OR13C6P COSMIC
Ensembl Genes ENSG00000179443 Ensembl, ENTREZGENE
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/Swiss-Prot
GTEx ENSG00000179443 GTEx
HGNC ID HGNC:15101 ENTREZGENE
Human Proteome Map OR13C6P Human Proteome Map
InterPro GPCR_Rhodpsn UniProtKB/Swiss-Prot
  GPCR_Rhodpsn_7TM UniProtKB/Swiss-Prot
  Olfact_rcpt UniProtKB/Swiss-Prot
NCBI Gene 392311 ENTREZGENE
PANTHER OLFACTORY RECEPTOR UniProtKB/Swiss-Prot
  OLFACTORY RECEPTOR 13C7-RELATED UniProtKB/Swiss-Prot
Pfam 7tm_4 UniProtKB/Swiss-Prot
PharmGKB PA32036 PharmGKB
PRINTS GPCRRHODOPSN UniProtKB/Swiss-Prot
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/Swiss-Prot
  G_PROTEIN_RECEP_F1_2 UniProtKB/Swiss-Prot
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/Swiss-Prot
UniProt O13C6_HUMAN UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-12-15 OR13C6P  olfactory receptor family 13 subfamily C member 6 pseudogene  OR13C6P  olfactory receptor, family 13, subfamily C, member 6 pseudogene  Symbol and/or name change 5135510 APPROVED