HPRT1P2 (hypoxanthine phosphoribosyltransferase 1 pseudogene 2) - Rat Genome Database

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Gene: HPRT1P2 (hypoxanthine phosphoribosyltransferase 1 pseudogene 2) Homo sapiens
Analyze
Symbol: HPRT1P2
Name: hypoxanthine phosphoribosyltransferase 1 pseudogene 2
RGD ID: 1351283
HGNC Page HGNC:5160
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: HPRTP2
Related Functional Gene: HPRT1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38530,248,374 - 30,249,481 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl530,248,350 - 30,248,893 (+)EnsemblGRCh38hg38GRCh38
GRCh37530,248,481 - 30,249,588 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36530,284,138 - 30,285,445 (+)NCBINCBI36Build 36hg18NCBI36
Celera530,130,006 - 30,131,113 (+)NCBICelera
Cytogenetic Map5p13.3NCBI
HuRef530,217,002 - 30,218,109 (+)NCBIHuRef
CHM1_1530,249,323 - 30,250,430 (+)NCBICHM1_1
T2T-CHM13v2.0530,362,357 - 30,363,464 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:1675192   PMID:6089358  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:84
Count of miRNA genes:80
Interacting mature miRNAs:82
Transcripts:ENST00000505250
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system adipose tissue appendage
High
Medium
Low 1 3
Below cutoff 7 5 7 6 3 6 10 5 12 3 51 8 1 9

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000505250
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl530,248,350 - 30,248,893 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC HPRT1P2 COSMIC
Ensembl Genes ENSG00000250587 Ensembl
GTEx ENSG00000250587 GTEx
HGNC ID HGNC:5160 ENTREZGENE
Human Proteome Map HPRT1P2 Human Proteome Map
NCBI Gene 3254 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-04-08 HPRT1P2  hypoxanthine phosphoribosyltransferase 1 pseudogene 2  HPRTP2  hypoxanthine phosphoribosyltransferase pseudogene 2  Symbol and/or name change 5135510 APPROVED
2015-04-08 HPRTP2  hypoxanthine phosphoribosyltransferase pseudogene 2  HPRT1P2  hypoxanthine phosphoribosyltransferase 1 pseudogene 2  Symbol and/or name change 5135510 APPROVED
2015-03-31 HPRT1P2  hypoxanthine phosphoribosyltransferase 1 pseudogene 2  HPRTP2  hypoxanthine phosphoribosyltransferase pseudogene 2  Symbol and/or name change 5135510 APPROVED