ADAM6 (ADAM metallopeptidase domain 6 (pseudogene)) - Rat Genome Database

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Gene: ADAM6 (ADAM metallopeptidase domain 6 (pseudogene)) Homo sapiens
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Symbol: ADAM6
Name: ADAM metallopeptidase domain 6 (pseudogene)
RGD ID: 1351124
HGNC Page HGNC:213
Description: Predicted to be located in external side of plasma membrane and sperm head plasma membrane. Predicted to be part of protein-containing complex.
Type: pseudo (Ensembl: transcribed_unprocessed_pseudogene)
RefSeq Status: VALIDATED
Previously known as: a disintegrin and metalloproteinase domain 6; C14orf96; tMDCIV
RGD Orthologs
Mouse
Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3814105,969,729 - 105,972,269 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl14105,969,729 - 105,972,269 (-)EnsemblGRCh38hg38GRCh38
GRCh38.p14 Ensembl14105,970,168 - 105,971,166 (-)EnsemblGRCh38hg38GRCh38
GRCh3714106,435,818 - 106,438,358 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3614105,506,864 - 105,509,403 (-)NCBINCBI36Build 36hg18NCBI36
Celera1486,366,419 - 86,368,958 (-)NCBICelera
Cytogenetic Map14q32.33NCBI
HuRef1486,568,723 - 86,571,224 (-)NCBIHuRef
CHM1_114106,306,686 - 106,309,225 (-)NCBICHM1_1
T2T-CHM13v2.014100,240,816 - 100,243,356 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:9841928   PMID:14702039   PMID:16162398   PMID:16344560  


Genomics

Comparative Map Data
ADAM6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3814105,969,729 - 105,972,269 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl14105,969,729 - 105,972,269 (-)EnsemblGRCh38hg38GRCh38
GRCh38.p14 Ensembl14105,970,168 - 105,971,166 (-)EnsemblGRCh38hg38GRCh38
GRCh3714106,435,818 - 106,438,358 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3614105,506,864 - 105,509,403 (-)NCBINCBI36Build 36hg18NCBI36
Celera1486,366,419 - 86,368,958 (-)NCBICelera
Cytogenetic Map14q32.33NCBI
HuRef1486,568,723 - 86,571,224 (-)NCBIHuRef
CHM1_114106,306,686 - 106,309,225 (-)NCBICHM1_1
T2T-CHM13v2.014100,240,816 - 100,243,356 (-)NCBIT2T-CHM13v2.0
Adam6a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3912113,507,528 - 113,510,034 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl12113,507,528 - 113,510,085 (+)EnsemblGRCm39 Ensembl
GRCm3812113,543,908 - 113,546,414 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl12113,543,908 - 113,546,465 (+)EnsemblGRCm38mm10GRCm38
MGSCv3712114,782,119 - 114,784,625 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3612113,991,716 - 113,994,222 (+)NCBIMGSCv36mm8
Celera12114,727,041 - 114,729,547 (+)NCBICelera
Cytogenetic Map12F1NCBI
cM Map1262.12NCBI
Adam6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86138,488,008 - 138,490,496 (+)NCBIGRCr8
mRatBN7.26132,666,974 - 132,669,462 (+)NCBImRatBN7.2mRatBN7.2
UTH_Rnor_SHR_Utx6132,831,539 - 132,834,027 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06133,230,764 - 133,233,252 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06132,505,448 - 132,507,936 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.06138,432,550 - 138,435,038 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6138,432,550 - 138,435,035 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06147,426,645 - 147,429,133 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46138,590,268 - 138,592,756 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.16138,596,454 - 138,598,940 (+)NCBI
Celera6130,181,108 - 130,183,596 (+)NCBICelera
Cytogenetic Map6q32NCBI

Variants

.
Variants in ADAM6
1 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:224
Count of miRNA genes:217
Interacting mature miRNAs:224
Transcripts:ENST00000452053
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
RH98683  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3714106,435,843 - 106,435,986UniSTSGRCh37
Build 3614105,506,888 - 105,507,031RGDNCBI36
Celera1486,366,443 - 86,366,586RGD
Cytogenetic Map14q32.33UniSTS
HuRef1486,568,747 - 86,568,890UniSTS
GeneMap99-GB4 RH Map14281.88UniSTS


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
239 785 384 422 606 383 633 184 623 44 308 1556 1356 1 460 136 643 530 140

Sequence


Ensembl Acc Id: ENST00000606026
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl14105,969,729 - 105,972,269 (-)Ensembl
Ensembl Acc Id: ENST00000616762
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl14105,970,168 - 105,971,166 (-)Ensembl
RefSeq Acc Id: NR_002224
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3814105,969,729 - 105,972,269 (-)NCBI
GRCh3714106,435,819 - 106,438,358 (-)RGD
Build 3614105,506,864 - 105,509,403 (-)NCBI Archive
Celera1486,366,419 - 86,368,958 (-)RGD
HuRef1486,568,722 - 86,571,224 (-)NCBI
CHM1_114106,306,687 - 106,309,225 (-)NCBI
T2T-CHM13v2.014100,240,816 - 100,243,356 (-)NCBI
Sequence:
Protein Sequences
GenBank Protein BAG52709 (Get FASTA)   NCBI Sequence Viewer  
  QVG74172 (Get FASTA)   NCBI Sequence Viewer  


Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:213 AgrOrtholog
COSMIC ADAM6 COSMIC
Ensembl Genes ENSG00000271968 Ensembl
  ENSG00000290844 Ensembl, ENTREZGENE
Ensembl Transcript ENST00000606026 ENTREZGENE
GTEx ENSG00000271968 GTEx
  ENSG00000290844 GTEx
HGNC ID HGNC:213 ENTREZGENE
Human Proteome Map ADAM6 Human Proteome Map
NCBI Gene 8755 ENTREZGENE
PharmGKB PA24531 PharmGKB


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2014-12-03 ADAM6  ADAM metallopeptidase domain 6 (pseudogene)    ADAM metallopeptidase domain 6, pseudogene  Symbol and/or name change 5135510 APPROVED
2012-09-19 ADAM6  ADAM metallopeptidase domain 6, pseudogene  ADAM6  ADAM metallopeptidase domain 6 (pseudogene)  Symbol and/or name change 5135510 APPROVED
2011-07-27 ADAM6  ADAM metallopeptidase domain 6 (pseudogene)  ADAM6  ADAM metallopeptidase domain 6  Symbol and/or name change 5135510 APPROVED