CENPCP1 (centromere protein C pseudogene 1) - Rat Genome Database

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Gene: CENPCP1 (centromere protein C pseudogene 1) Homo sapiens
Analyze
Symbol: CENPCP1
Name: centromere protein C pseudogene 1
RGD ID: 1350876
HGNC Page HGNC:1855
Description: ASSOCIATED WITH amphetamine abuse; INTERACTS WITH methamphetamine
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: CENPC; CENPC1P1; CENPC2; centromere protein c2, 140kda
Related Functional Gene: CENPC  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381289,499,942 - 89,503,082 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1289,500,093 - 89,502,670 (+)EnsemblGRCh38hg38GRCh38
GRCh371289,893,719 - 89,896,859 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361288,417,744 - 88,421,081 (+)NCBINCBI36Build 36hg18NCBI36
Celera1289,565,358 - 89,568,532 (+)NCBICelera
Cytogenetic Map12q21.33NCBI
HuRef1286,959,531 - 86,962,715 (+)NCBIHuRef
CHM1_11289,858,585 - 89,861,759 (+)NCBICHM1_1
T2T-CHM13v2.01289,481,815 - 89,484,961 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:7959789   PMID:8406460   PMID:12490152  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:74
Count of miRNA genes:73
Interacting mature miRNAs:74
Transcripts:ENST00000533085
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
RH17759  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371289,896,395 - 89,896,639UniSTSGRCh37
Build 361288,420,526 - 88,420,770RGDNCBI36
Celera1289,568,068 - 89,568,312RGD
Cytogenetic Map4q13.2UniSTS
Cytogenetic Map12q21.33UniSTS
HuRef1286,962,247 - 86,962,491UniSTS
GeneMap99-GB4 RH Map12345.72UniSTS
NCBI RH Map12593.5UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium
Low 1 8 5 4 3 6 7 13 1
Below cutoff 1483 1496 1003 285 993 153 2345 970 1793 226 985 1129 135 784 1375 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000533085
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1289,500,093 - 89,502,670 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC CENPCP1 COSMIC
Ensembl Genes ENSG00000226982 Ensembl, ENTREZGENE
GTEx ENSG00000226982 GTEx
HGNC ID HGNC:1855 ENTREZGENE
Human Proteome Map CENPCP1 Human Proteome Map
NCBI Gene 1061 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-07-09 CENPCP1  centromere protein C pseudogene 1  CENPC1P1  centromere protein C 1 pseudogene 1  Symbol and/or name change 5135510 APPROVED
2011-07-27 CENPC1P1  centromere protein C 1 pseudogene 1  CENPC2  centromere protein C2, 140kDa pseudogene  Symbol and/or name change 5135510 APPROVED