FRMPD2B (FERM and PDZ domain containing 2B (pseudogene)) - Rat Genome Database

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Gene: FRMPD2B (FERM and PDZ domain containing 2B (pseudogene)) Homo sapiens
Analyze
No known orthologs.
Symbol: FRMPD2B
Name: FERM and PDZ domain containing 2B (pseudogene) (Ensembl:FERM and PDZ domain containing 2B, pseudogene)
RGD ID: 1350685
HGNC Page HGNC:16843
Description: This gene represents a pseudogene of the FERM and PDZ domain containing 2 gene (FRMPD2, GeneID 143162). Along with the functional gene, this gene is located in a region of segmental duplication on chromosome 10q. [provided by RefSeq, Dec 2014]
Type: pseudo (Ensembl: transcribed_unprocessed_pseudogene)
RefSeq Status: VALIDATED
Previously known as: bA556L1.2; FERM and PDZ domain containing 2 pseudogene 2; FERM and PDZ domain containing 2B, pseudogene; FLJ78870; FLJ94239; FRMPD2; FRMPD2L1; FRMPD2L2; FRMPD2P1; FRMPD2P2; FRMPDP2; MGC169052; MGC169055; MGC169060; MGC169061; pdz domain containing 5a; PDZD5A; PDZD5B; PDZD5C; PDZK4; PDZK5A; PDZK5B; PDZK5C; yX59F3.2
RGD Orthologs
Alliance Genes
More Info homologs ...
Related Functional Gene: FRMPD2  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381046,876,674 - 46,895,326 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1046,870,858 - 46,894,562 (+)EnsemblGRCh38hg38GRCh38
GRCh371048,844,036 - 48,862,688 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361048,464,046 - 48,483,638 (-)NCBINCBI36Build 36hg18NCBI36
Celera1042,962,487 - 42,970,036 (-)NCBICelera
Cytogenetic Map10q11.22NCBI
HuRef1043,629,291 - 43,630,101 (-)NCBIHuRef
HuRef1043,635,981 - 43,648,796 (-)NCBIHuRef
CHM1_11049,009,065 - 49,027,638 (-)NCBICHM1_1
T2T-CHM13v2.01047,765,424 - 47,784,070 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:12477932   PMID:21873635   PMID:30228200  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:456
Count of miRNA genes:382
Interacting mature miRNAs:411
Transcripts:ENST00000374337, ENST00000431305
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 1 114 60 3
Low 234 225 272 48 101 26 344 107 1750 16 452 345 23 76 226 1
Below cutoff 444 701 622 87 281 45 785 406 1185 68 253 654 44 195 501 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NR_033172 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK294650 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK313659 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK315971 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL450334 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC071635 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC072395 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC110798 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC137431 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC137434 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC137439 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC137440 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC144635 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX005072 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068268 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DC315823 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  MH721910 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENST00000431305
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1046,870,858 - 46,894,562 (+)Ensembl
RefSeq Acc Id: ENST00000686197
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1046,876,655 - 46,894,754 (+)Ensembl
RefSeq Acc Id: ENST00000689709
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1046,876,731 - 46,895,113 (+)Ensembl
RefSeq Acc Id: ENST00000690547
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1046,870,762 - 46,895,011 (+)Ensembl
RefSeq Acc Id: NR_033172
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381046,876,674 - 46,895,326 (+)NCBI
GRCh371048,844,036 - 48,862,688 (-)RGD
CHM1_11049,009,065 - 49,027,638 (-)NCBI
T2T-CHM13v2.01047,765,424 - 47,784,070 (+)NCBI
Sequence:
Reference Protein Sequences
Protein Domains
PDZ

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6IN97-F1-model_v2 AlphaFold Q6IN97 1-320 view protein structure


Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:16843 AgrOrtholog
COSMIC FRMPD2B COSMIC
Ensembl Genes ENSG00000150175 Ensembl
  ENSG00000293529 ENTREZGENE
Ensembl Transcript ENST00000689709 ENTREZGENE
Gene3D-CATH 2.30.42.10 UniProtKB/Swiss-Prot
GTEx ENSG00000150175 GTEx
  ENSG00000293529 GTEx
HGNC ID HGNC:16843 ENTREZGENE
Human Proteome Map FRMPD2B Human Proteome Map
InterPro PDZ UniProtKB/Swiss-Prot
  PDZ_sf UniProtKB/Swiss-Prot
NCBI Gene 728798 ENTREZGENE
PANTHER NON-SPECIFIC PROTEIN-TYROSINE KINASE UniProtKB/Swiss-Prot
  TYROSINE-PROTEIN PHOSPHATASE NON-RECEPTOR TYPE 13 UniProtKB/Swiss-Prot
Pfam PDZ UniProtKB/Swiss-Prot
PROSITE PDZ UniProtKB/Swiss-Prot
SMART PDZ UniProtKB/Swiss-Prot
Superfamily-SCOP SSF50156 UniProtKB/Swiss-Prot
UniProt FRP2L_HUMAN UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary B2RPG2 UniProtKB/Swiss-Prot
  Q5RJ30 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-08-28 FRMPD2B  FERM and PDZ domain containing 2B (pseudogene)  FRMPD2B  FERM and PDZ domain containing 2B, pseudogene  Symbol and/or name change 19259463 PROVISIONAL
2016-02-23 FRMPD2B  FERM and PDZ domain containing 2B, pseudogene  FRMPD2P2  FERM and PDZ domain containing 2 pseudogene 2  Data merged from RGD:1351209 737654 PROVISIONAL
2014-07-23 FRMPD2B  FERM and PDZ domain containing 2B, pseudogene  FRMPD2P1  FERM and PDZ domain containing 2 pseudogene 1  Symbol and/or name change 5135510 APPROVED
2012-11-20 FRMPD2P2  FERM and PDZ domain containing 2 pseudogene 2  FRMPDP2    Symbol and/or name change 5135510 APPROVED
2011-07-27 FRMPD2P1  FERM and PDZ domain containing 2 pseudogene 1  FRMPD2L1  FERM and PDZ domain containing 2 like 1  Symbol and/or name change 5135510 APPROVED
2011-07-27 FRMPDP2  FERM and PDZ domain containing 2 pseudogene 2  FRMPD2L2  FERM and PDZ domain containing 2 like 2  Symbol and/or name change 5135510 APPROVED