FKBP9P1 (FKBP prolyl isomerase 9 pseudogene 1) - Rat Genome Database

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Gene: FKBP9P1 (FKBP prolyl isomerase 9 pseudogene 1) Homo sapiens
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Symbol: FKBP9P1
Name: FKBP prolyl isomerase 9 pseudogene 1
RGD ID: 1350622
HGNC Page HGNC:23568
Description: Predicted to enable calcium ion binding activity and peptidyl-prolyl cis-trans isomerase activity. Predicted to be located in endoplasmic reticulum.
Type: pseudo (Ensembl: transcribed_unprocessed_pseudogene)
RefSeq Status: VALIDATED
Previously known as: FK506 binding protein 9 pseudogene 1; FKBP9L; MGC20531
Related Functional Gene: FKBP9  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38755,681,074 - 55,704,567 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl755,681,074 - 55,689,301 (-)EnsemblGRCh38hg38GRCh38
GRCh38.p14 Ensembl755,682,652 - 55,713,252 (-)EnsemblGRCh38hg38GRCh38
GRCh37755,748,767 - 55,772,260 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36755,716,261 - 55,739,754 (-)NCBINCBI36Build 36hg18NCBI36
Build 34755,522,975 - 55,531,203NCBI
Celera733,004,541 - 33,028,362 (+)NCBICelera
Cytogenetic Map7p11.2NCBI
CHM1_1755,751,385 - 55,774,877 (-)NCBICHM1_1
T2T-CHM13v2.0755,841,330 - 55,864,824 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2755,753,014 - 55,776,507 (-)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:9847074   PMID:31536960   PMID:32769488   PMID:33961781  


Genomics

Variants

.
Variants in FKBP9P1
1 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:400
Count of miRNA genes:260
Interacting mature miRNAs:266
Transcripts:ENST00000324256, ENST00000441699, ENST00000455909
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
FKBP9_1476  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37755,748,777 - 55,749,662UniSTSGRCh37
GRCh37733,045,643 - 33,046,530UniSTSGRCh37
Build 36733,012,168 - 33,013,055RGDNCBI36
Celera733,027,467 - 33,028,354RGD
HuRef732,924,886 - 32,925,773UniSTS
CRA_TCAGchr7v2733,090,187 - 33,091,074UniSTS
CRA_TCAGchr7v2755,753,024 - 55,753,909UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 4 1 1 23 10 11 6 13 26 1
Low 1618 1197 779 115 235 61 2575 721 828 258 1315 1130 63 916 1499 1
Below cutoff 809 1629 897 463 1229 359 1739 1449 2854 150 118 448 106 288 1278 3

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000441699
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl755,682,652 - 55,713,252 (-)Ensembl
RefSeq Acc Id: ENST00000455909
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl755,681,074 - 55,689,301 (-)Ensembl
RefSeq Acc Id: NR_003949
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38755,681,074 - 55,704,567 (-)NCBI
GRCh37755,748,767 - 55,772,260 (-)RGD
Build 36755,716,261 - 55,739,754 (-)NCBI Archive
Celera733,004,541 - 33,028,362 (+)RGD
HuRef732,901,942 - 32,925,781 (+)RGD
CHM1_1755,751,385 - 55,774,877 (-)NCBI
T2T-CHM13v2.0755,841,330 - 55,864,824 (-)NCBI
CRA_TCAGchr7v2755,753,014 - 55,776,507 (-)RGD
Sequence:
RefSeq Acc Id: NR_027339
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38755,681,074 - 55,689,460 (-)NCBI
GRCh37755,748,767 - 55,772,260 (-)RGD
CHM1_1755,751,385 - 55,759,771 (-)NCBI
T2T-CHM13v2.0755,841,330 - 55,849,717 (-)NCBI
CRA_TCAGchr7v2755,753,014 - 55,776,507 (-)ENTREZGENE
Sequence:
RefSeq Acc Id: NR_027340
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38755,681,074 - 55,688,032 (-)NCBI
GRCh37755,748,767 - 55,772,260 (-)RGD
CHM1_1755,751,385 - 55,758,343 (-)NCBI
T2T-CHM13v2.0755,841,330 - 55,848,290 (-)NCBI
CRA_TCAGchr7v2755,753,014 - 55,776,507 (-)ENTREZGENE
Sequence:
RefSeq Acc Id: NR_027342
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38755,681,074 - 55,689,301 (-)NCBI
GRCh37755,748,767 - 55,772,260 (-)RGD
CHM1_1755,751,385 - 55,759,612 (-)NCBI
T2T-CHM13v2.0755,841,330 - 55,849,558 (-)NCBI
CRA_TCAGchr7v2755,753,014 - 55,776,507 (-)ENTREZGENE
Sequence:
Protein Sequences
GenBank Protein AAQ93369 (Get FASTA)   NCBI Sequence Viewer  
  BAF82127 (Get FASTA)   NCBI Sequence Viewer  
  BAG35818 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
Protein Domains
EF-hand   PPIase FKBP-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q75LS8-F1-model_v2 AlphaFold Q75LS8 1-142 view protein structure


Additional Information

Database Acc Id Source(s)
COSMIC FKBP9P1 COSMIC
Ensembl Genes ENSG00000176826 Ensembl
  ENSG00000291029 Ensembl, ENTREZGENE
Ensembl Transcript ENST00000455909 ENTREZGENE
Gene3D-CATH 3.10.50.40 UniProtKB/Swiss-Prot
  EF-hand UniProtKB/Swiss-Prot
GTEx ENSG00000176826 GTEx
  ENSG00000291029 GTEx
HGNC ID HGNC:23568 ENTREZGENE
Human Proteome Map FKBP9P1 Human Proteome Map
InterPro EF-hand-dom_pair UniProtKB/Swiss-Prot
  EF_Hand_1_Ca_BS UniProtKB/Swiss-Prot
  EF_hand_dom UniProtKB/Swiss-Prot
  PPIase_dom_sf UniProtKB/Swiss-Prot
  PPIase_FKBP_dom UniProtKB/Swiss-Prot
NCBI Gene 360132 ENTREZGENE
PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKBP9 UniProtKB/Swiss-Prot
  PTHR46046 UniProtKB/Swiss-Prot
Pfam EF-hand_5 UniProtKB/Swiss-Prot
  FKBP_C UniProtKB/Swiss-Prot
PROSITE EF_HAND_1 UniProtKB/Swiss-Prot
  EF_HAND_2 UniProtKB/Swiss-Prot
  ER_TARGET UniProtKB/Swiss-Prot
  FKBP_PPIASE UniProtKB/Swiss-Prot
SMART EFh UniProtKB/Swiss-Prot
Superfamily-SCOP FKBP-like UniProtKB/Swiss-Prot
  SSF47473 UniProtKB/Swiss-Prot
UniProt FKB9L_HUMAN UniProtKB/Swiss-Prot
UniProt Secondary B2R7H1 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-11-06 FKBP9P1  FKBP prolyl isomerase 9 pseudogene 1    FK506 binding protein 9 pseudogene 1  Symbol and/or name change 5135510 APPROVED
2014-04-09 FKBP9P1  FK506 binding protein 9 pseudogene 1  FKBP9L  FK506 binding protein 9-like  Symbol and/or name change 5135510 APPROVED