FXYD6P3 (FXYD domain containing ion transport regulator 6 pseudogene 3) - Rat Genome Database

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Gene: FXYD6P3 (FXYD domain containing ion transport regulator 6 pseudogene 3) Homo sapiens
Analyze
No known orthologs.
Symbol: FXYD6P3
Name: FXYD domain containing ion transport regulator 6 pseudogene 3
RGD ID: 1350598
HGNC Page HGNC:31124
Description: Predicted to enable sodium channel regulator activity. Predicted to be involved in monoatomic ion transmembrane transport and regulation of monoatomic ion transport. Predicted to be located in membrane.
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: FXYD domain containing ion transport regulator 6, pseudogene 3; FXYD8
RGD Orthologs
Alliance Genes
More Info homologs ...
Related Functional Gene: FXYD6  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X73,875,509 - 73,876,960 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX73,875,068 - 73,875,635 (+)EnsemblGRCh38hg38GRCh38
GRCh37X73,095,344 - 73,096,795 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X73,011,598 - 73,013,524 (+)NCBINCBI36Build 36hg18NCBI36
CeleraX73,378,824 - 73,380,275 (+)NCBICelera
Cytogenetic MapXq13.2NCBI
HuRefX66,729,251 - 66,730,702 (+)NCBIHuRef
CHM1_1X72,988,093 - 72,989,544 (+)NCBICHM1_1
T2T-CHM13v2.0X72,308,825 - 72,310,276 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
membrane  (IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:21873635  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:200
Count of miRNA genes:186
Interacting mature miRNAs:189
Transcripts:ENST00000495569
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 1 1 4 5 2
Below cutoff 36 31 22 5 24 4 50 27 50 13 22 30 1 10 39

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000495569
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblX73,875,068 - 73,875,635 (+)Ensembl
RefSeq Acc Id: NM_001099278
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
Build 36X73,011,598 - 73,013,524 (+)NCBI Archive
Protein Sequences
GenBank Protein P58550 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P58550-F1-model_v2 AlphaFold P58550 1-94 view protein structure


Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:31124 AgrOrtholog
COSMIC FXYD6P3 COSMIC
Ensembl Genes ENSG00000182707 Ensembl
Gene3D-CATH Single helix bin UniProtKB/Swiss-Prot
GTEx ENSG00000182707 GTEx
HGNC ID HGNC:31124 ENTREZGENE
Human Proteome Map FXYD6P3 Human Proteome Map
InterPro FXYD_motif UniProtKB/Swiss-Prot
  Ion-transport_regulator_FXYD UniProtKB/Swiss-Prot
NCBI Gene 406875 ENTREZGENE
PANTHER FXYD DOMAIN-CONTAINING ION TRANSPORT REGULATOR 6-RELATED UniProtKB/Swiss-Prot
  SODIUM/POTASSIUM-TRANSPORTING ATPASE SUBUNIT GAMMA UniProtKB/Swiss-Prot
Pfam ATP1G1_PLM_MAT8 UniProtKB/Swiss-Prot
PharmGKB PA134868718 PharmGKB
PROSITE FXYD UniProtKB/Swiss-Prot
UniProt FXYD8_HUMAN UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary Q5JTT7 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-05-05 FXYD6P3  FXYD domain containing ion transport regulator 6 pseudogene 3  FXYD6P3  FXYD domain containing ion transport regulator 6, pseudogene 3  Data merged from RGD:1344306 737654 PROVISIONAL
2011-09-20 FXYD6P3  FXYD domain containing ion transport regulator 6 pseudogene 3  FXYD6P3  FXYD domain-containing ion transport regulator 6 pseudogene 3  Symbol and/or name change 5135510 APPROVED
2011-09-13 FXYD6P3  FXYD domain-containing ion transport regulator 6 pseudogene 3  FXYD8  FXYD domain containing ion transport regulator 8  Symbol and/or name change 5135510 APPROVED