CLEC7A (C-type lectin domain containing 7A) - Rat Genome Database

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Gene: CLEC7A (C-type lectin domain containing 7A) Homo sapiens
Analyze
Symbol: CLEC7A
Name: C-type lectin domain containing 7A
RGD ID: 1350458
HGNC Page HGNC:14558
Description: Enables (1->3)-beta-D-glucan binding activity; identical protein binding activity; and pattern recognition receptor activity. Involved in several processes, including positive regulation of cytokine production; positive regulation of nitrogen compound metabolic process; and response to fungus. Located in cell surface and cytoplasm. Implicated in aspergillosis and chronic mucocutaneous candidiasis.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: beta-glucan receptor; BGR; C-type (calcium dependent, carbohydrate-recognition domain) lectin, superfamily member 12; C-type lectin domain family 7 member A; C-type lectin domain family 7, member A; C-type lectin superfamily member 12; CANDF4; CD369; CLECSF12; DC-associated C-type lectin 1; dectin-1; DECTIN1; dendritic cell-associated C-type lectin 1; dendritic cell-associated C-type lectin-1; lectin-like receptor 1; SCARE2
RGD Orthologs
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381210,116,777 - 10,130,304 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1210,116,777 - 10,130,258 (-)EnsemblGRCh38hg38GRCh38
GRCh371210,269,376 - 10,282,798 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361210,160,643 - 10,174,135 (-)NCBINCBI36Build 36hg18NCBI36
Build 341210,171,190 - 10,174,103NCBI
Celera1215,430,059 - 15,443,548 (-)NCBICelera
Cytogenetic Map12p13.2NCBI
HuRef1210,012,523 - 10,026,010 (-)NCBIHuRef
CHM1_11210,238,652 - 10,252,134 (-)NCBICHM1_1
T2T-CHM13v2.01210,003,452 - 10,016,867 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,1-dichloroethene  (ISO)
17beta-estradiol  (ISO)
17beta-estradiol 3-benzoate  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
4-hydroxyphenyl retinamide  (ISO)
acetamide  (ISO)
acrylamide  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (EXP)
amphetamine  (ISO)
antirheumatic drug  (EXP)
arsenous acid  (EXP)
benzo[a]pyrene  (EXP,ISO)
Benzo[k]fluoranthene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (ISO)
bortezomib  (EXP)
butyric acid  (EXP)
cadmium atom  (EXP)
cadmium dichloride  (ISO)
carbon nanotube  (ISO)
chitosan  (EXP)
chloroprene  (ISO)
choline  (ISO)
chromium(6+)  (ISO)
cisplatin  (EXP)
diarsenic trioxide  (EXP)
dimethylarsinic acid  (ISO)
dioxygen  (ISO)
disulfiram  (EXP)
epoxiconazole  (ISO)
ethanol  (ISO)
fenamidone  (ISO)
fenthion  (ISO)
folic acid  (ISO)
formaldehyde  (EXP,ISO)
furan  (ISO)
GW 4064  (ISO)
L-methionine  (ISO)
leukotriene C4  (EXP)
lidocaine  (ISO)
lipopolysaccharide  (EXP,ISO)
metam  (ISO)
methylarsonic acid  (ISO)
nickel atom  (EXP)
ozone  (ISO)
paracetamol  (EXP,ISO)
paraquat  (EXP)
PCB138  (ISO)
peptidoglycan  (EXP)
phthalaldehyde  (ISO)
protein kinase inhibitor  (EXP)
resveratrol  (EXP)
silicon dioxide  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sodium dichromate  (ISO)
succimer  (EXP)
tacrolimus hydrate  (ISO)
testosterone  (ISO)
tetrachloroethene  (ISO)
tetrachloromethane  (ISO)
thioacetamide  (ISO)
titanium dioxide  (ISO)
tremolite asbestos  (ISO)
Tributyltin oxide  (ISO)
trimellitic anhydride  (ISO)
trovafloxacin  (ISO)
vinclozolin  (ISO)
ziram  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
antifungal innate immune response  (ISS)
carbohydrate mediated signaling  (TAS)
cell activation  (ISS)
cell activation  (ISS)
cell recognition  (IDA)
cell surface pattern recognition receptor signaling pathway  (IEA,ISO)
cell-cell adhesion  (IEA,ISO)
cellular response to molecule of fungal origin  (IBA,IDA,IEA,ISS)
defense response to protozoan  (NAS)
detection of fungus  (IBA,IDA)
detection of molecule of fungal origin  (IBA,IDA,ISS)
detection of yeast  (ISO,ISS)
immune system process  (IEA)
inflammatory response  (IEA)
inflammatory response  (IEA)
innate immune response  (IEA)
leukocyte activation involved in immune response  (IEA)
phagocytosis, engulfment  (IEA,ISO)
phagocytosis, recognition  (IBA,IDA,ISO)
positive regulation of calcium-mediated signaling  (ISS)
positive regulation of cell maturation  (IDA)
positive regulation of cell migration  (IBA,IMP)
positive regulation of cell population proliferation  (IBA,IMP)
positive regulation of cysteine-type endopeptidase activity involved in apoptotic process  (IMP)
positive regulation of cytokine production involved in inflammatory response  (IBA,IDA)
positive regulation of dendritic cell cytokine production  (ISS)
positive regulation of DNA-binding transcription factor activity  (ISS)
positive regulation of gene expression  (IDA)
positive regulation of I-kappaB kinase/NF-kappaB signaling  (ISS)
positive regulation of interleukin-1 beta production  (IDA)
positive regulation of interleukin-10 production  (IDA,ISS)
positive regulation of interleukin-12 production  (IDA)
positive regulation of interleukin-2 production  (IDA,ISS)
positive regulation of interleukin-23 production  (ISS)
positive regulation of interleukin-6 production  (IDA,ISS)
positive regulation of interleukin-8 production  (IMP)
positive regulation of killing of cells of another organism  (IBA,IDA)
positive regulation of lymphocyte activation  (IBA,IDA)
positive regulation of monocyte chemotactic protein-1 production  (IMP)
positive regulation of NF-kappaB transcription factor activity  (ISS)
positive regulation of nitric oxide biosynthetic process  (IDA)
positive regulation of peptidyl-tyrosine phosphorylation  (IEA)
positive regulation of phagocytosis  (IBA,IDA,ISO)
positive regulation of protein-containing complex assembly  (IMP)
positive regulation of respiratory burst  (IDA)
positive regulation of stress-activated MAPK cascade  (IEA)
positive regulation of superoxide anion generation  (IDA)
positive regulation of T-helper 17 type immune response  (ISS)
positive regulation of tumor necrosis factor production  (IDA,ISO,ISS)
positive regulation of type II interferon production  (IDA)
positive regulation of wound healing  (IBA,IMP)
regulation of calcineurin-NFAT signaling cascade  (ISS)
regulation of I-kappaB kinase/NF-kappaB signaling  (ISS)
response to molecule of fungal origin  (ISO)
response to yeast  (ISO,ISS)
stimulatory C-type lectin receptor signaling pathway  (ISS)
T cell activation  (TAS)
T cell activation  (TAS)

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
2. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. RGD HPO Phenotype Annotation Pipeline RGD automated import pipeline for human HPO-to-gene-to-disease annotations
6. Inhibition of TREM-1 and Dectin-1 Alleviates the Severity of Fungal Keratitis by Modulating Innate Immune Responses. Zhong J, etal., PLoS One. 2016 Mar 10;11(3):e0150114. doi: 10.1371/journal.pone.0150114. eCollection 2016.
Additional References at PubMed
PMID:7566098   PMID:10508765   PMID:10779524   PMID:11470510   PMID:11491532   PMID:11544516   PMID:11567029   PMID:11745369   PMID:12423684   PMID:12477932   PMID:12689921   PMID:12945048  
PMID:12975309   PMID:14707091   PMID:15130945   PMID:15489334   PMID:15728245   PMID:15816015   PMID:15944324   PMID:15956283   PMID:16341139   PMID:16344560   PMID:16870151   PMID:17182550  
PMID:17207965   PMID:17698636   PMID:18549457   PMID:19122653   PMID:19134118   PMID:19223162   PMID:19358895   PMID:19614557   PMID:19633936   PMID:19773555   PMID:19811837   PMID:19864674  
PMID:19888805   PMID:19915667   PMID:20158887   PMID:20237496   PMID:20299682   PMID:20360401   PMID:20421639   PMID:20452827   PMID:20577092   PMID:20608913   PMID:20631729   PMID:20700596  
PMID:20807886   PMID:21242599   PMID:21283787   PMID:21296999   PMID:21426724   PMID:21515468   PMID:21516116   PMID:21531876   PMID:21873635   PMID:21876553   PMID:21881131   PMID:21899704  
PMID:21985303   PMID:21988832   PMID:22199280   PMID:22267217   PMID:22384201   PMID:22562430   PMID:22674328   PMID:22952831   PMID:23097038   PMID:23239982   PMID:23332664   PMID:23374272  
PMID:23475217   PMID:23674515   PMID:23745599   PMID:23787127   PMID:24068891   PMID:24094722   PMID:24440830   PMID:24721111   PMID:24808366   PMID:24835401   PMID:24864436   PMID:25008994  
PMID:25161190   PMID:25251945   PMID:25267792   PMID:25416956   PMID:25461401   PMID:25883525   PMID:26123355   PMID:26156997   PMID:26352598   PMID:26598620   PMID:26709456   PMID:26739065  
PMID:26871637   PMID:26963509   PMID:27449326   PMID:27600310   PMID:28303575   PMID:28335387   PMID:28394331   PMID:28454101   PMID:28614714   PMID:28848046   PMID:28873980   PMID:28926773  
PMID:29110339   PMID:29475849   PMID:29668708   PMID:29991678   PMID:30021884   PMID:30517524   PMID:30882002   PMID:30944411   PMID:31139177   PMID:31371767   PMID:31515488   PMID:31613800  
PMID:31696220   PMID:31845221   PMID:31964711   PMID:32234475   PMID:32296183   PMID:32476786   PMID:32493087   PMID:33552998   PMID:33982290   PMID:34305908   PMID:34329585   PMID:34362877  
PMID:36139454   PMID:36377664   PMID:36463168  


Genomics

Comparative Map Data
CLEC7A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381210,116,777 - 10,130,304 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1210,116,777 - 10,130,258 (-)EnsemblGRCh38hg38GRCh38
GRCh371210,269,376 - 10,282,798 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361210,160,643 - 10,174,135 (-)NCBINCBI36Build 36hg18NCBI36
Build 341210,171,190 - 10,174,103NCBI
Celera1215,430,059 - 15,443,548 (-)NCBICelera
Cytogenetic Map12p13.2NCBI
HuRef1210,012,523 - 10,026,010 (-)NCBIHuRef
CHM1_11210,238,652 - 10,252,134 (-)NCBICHM1_1
T2T-CHM13v2.01210,003,452 - 10,016,867 (-)NCBIT2T-CHM13v2.0
Clec7a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396129,438,554 - 129,449,748 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6129,438,554 - 129,449,742 (-)EnsemblGRCm39 Ensembl
GRCm386129,461,591 - 129,472,785 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6129,461,591 - 129,472,779 (-)EnsemblGRCm38mm10GRCm38
MGSCv376129,411,609 - 129,422,795 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366129,427,284 - 129,438,465 (-)NCBIMGSCv36mm8
Celera6131,183,577 - 131,194,776 (-)NCBICelera
Cytogenetic Map6F3NCBI
Clec7a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.24162,902,731 - 162,913,931 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4162,902,732 - 162,913,897 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4169,137,545 - 169,148,615 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.04164,920,504 - 164,931,574 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.04163,554,549 - 163,565,619 (-)NCBIRnor_WKY
Rnor_6.04163,216,152 - 163,227,367 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4163,216,163 - 163,227,334 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04211,859,714 - 211,870,889 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44166,723,515 - 166,734,681 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera4151,587,575 - 151,598,651 (-)NCBICelera
Cytogenetic Map4q42NCBI
CLEC7A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11210,410,384 - 10,425,452 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1210,410,384 - 10,425,452 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01210,161,780 - 10,174,943 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
CLEC7A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12735,852,685 - 35,885,673 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2735,853,099 - 36,007,157 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2710,738,120 - 10,766,549 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02736,203,142 - 36,231,601 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2736,209,883 - 36,264,356 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12736,091,248 - 36,119,494 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02736,120,431 - 36,141,974 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02710,260,084 - 10,288,263 (-)NCBIUU_Cfam_GSD_1.0
Clec7a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494597,304,630 - 97,315,165 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004936902436,224 - 446,435 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CLEC7A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl561,832,954 - 61,846,434 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1561,832,910 - 61,846,441 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2564,542,875 - 64,556,425 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CLEC7A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1119,989,520 - 10,007,442 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl119,995,203 - 10,006,746 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660892,066,063 - 2,084,594 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Clec7a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475226,871,292 - 26,891,910 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475226,871,556 - 26,885,778 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in CLEC7A
11 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
NM_197947.3(CLEC7A):c.714T>G (p.Tyr238Ter) single nucleotide variant Aspergillosis, susceptibility to [RCV000023528]|Familial chronic mucocutaneous candidiasis [RCV000004721]|Familial chronic mucocutaneous candidiasis [RCV002504746]|not specified [RCV000455914] Chr12:10118488 [GRCh38]
Chr12:10271087 [GRCh37]
Chr12:12p13.2		 pathogenic|risk factor|benign|likely benign
GRCh38/hg38 12p13.33-11.22(chr12:121055-28415184)x1 copy number loss See cases [RCV000052776] Chr12:121055..28415184 [GRCh38]
Chr12:282465..28568117 [GRCh37]
Chr12:100482..28459384 [NCBI36]
Chr12:12p13.33-11.22		 pathogenic
GRCh38/hg38 12p13.33-11.1(chr12:77187-34380176)x3 copy number gain See cases [RCV000053660] Chr12:77187..34380176 [GRCh38]
Chr12:282465..34533111 [GRCh37]
Chr12:56614..34424378 [NCBI36]
Chr12:12p13.33-11.1		 pathogenic
GRCh38/hg38 12p13.33-12.1(chr12:80412-25470329)x3 copy number gain See cases [RCV000053662] Chr12:80412..25470329 [GRCh38]
Chr12:282465..25623263 [GRCh37]
Chr12:59839..25514530 [NCBI36]
Chr12:12p13.33-12.1		 pathogenic
GRCh38/hg38 12p13.33-11.1(chr12:212976-33926913)x4 copy number gain See cases [RCV000053666] Chr12:212976..33926913 [GRCh38]
Chr12:322142..34079848 [GRCh37]
Chr12:192403..33971115 [NCBI36]
Chr12:12p13.33-11.1		 pathogenic
GRCh38/hg38 12p13.33-11.1(chr12:121255-34603274)x3 copy number gain See cases [RCV000136611] Chr12:121255..34603274 [GRCh38]
Chr12:282465..34756209 [GRCh37]
Chr12:100682..34647476 [NCBI36]
Chr12:12p13.33-11.1		 pathogenic
GRCh38/hg38 12p13.33-12.3(chr12:2871741-14987348)x3 copy number gain See cases [RCV000137694] Chr12:2871741..14987348 [GRCh38]
Chr12:2980907..15140282 [GRCh37]
Chr12:2851168..15031549 [NCBI36]
Chr12:12p13.33-12.3		 pathogenic
GRCh38/hg38 12p13.33-11.1(chr12:121271-34603261)x3 copy number gain See cases [RCV000139052] Chr12:121271..34603261 [GRCh38]
Chr12:282465..34756196 [GRCh37]
Chr12:100698..34647463 [NCBI36]
Chr12:12p13.33-11.1		 pathogenic
GRCh38/hg38 12p13.33-11.1(chr12:54427-34608071)x4 copy number gain See cases [RCV000139787] Chr12:54427..34608071 [GRCh38]
Chr12:282465..34761006 [GRCh37]
Chr12:33854..34652273 [NCBI36]
Chr12:12p13.33-11.1		 pathogenic
GRCh38/hg38 12p13.33-q24.33(chr12:121271-133196807)x3 copy number gain See cases [RCV000139555] Chr12:121271..133196807 [GRCh38]
Chr12:282465..133773393 [GRCh37]
Chr12:100698..132283466 [NCBI36]
Chr12:12p13.33-q24.33		 pathogenic
GRCh38/hg38 12p13.33-12.2(chr12:1258274-20657577)x3 copy number gain See cases [RCV000141905] Chr12:1258274..20657577 [GRCh38]
Chr12:1367440..20810511 [GRCh37]
Chr12:1237701..20701778 [NCBI36]
Chr12:12p13.33-12.2		 pathogenic
GRCh38/hg38 12p13.33-11.1(chr12:64620-34682902)x4 copy number gain See cases [RCV000142149] Chr12:64620..34682902 [GRCh38]
Chr12:173786..34835837 [GRCh37]
Chr12:44047..34727104 [NCBI36]
Chr12:12p13.33-11.1		 pathogenic
GRCh37/hg19 12p13.33-11.1(chr12:148034-34178799)x4 copy number gain See cases [RCV000240164] Chr12:148034..34178799 [GRCh37]
Chr12:12p13.33-11.1		 pathogenic
GRCh37/hg19 12p13.33-q24.33(chr12:1-133851895)x3 copy number gain See cases [RCV000258805] Chr12:1..133851895 [GRCh37]
Chr12:12p13.33-q24.33		 pathogenic|likely pathogenic
chr12:10074776-18800953 complex variant complex Ductal breast carcinoma [RCV000207105] Chr12:10074776..18800953 [GRCh37]
Chr12:12p13.31-12.3		 uncertain significance
GRCh37/hg19 12p13.33-11.1(chr12:89061-34178799)x3 copy number gain See cases [RCV000240487] Chr12:89061..34178799 [GRCh37]
Chr12:12p13.33-11.1		 pathogenic
GRCh37/hg19 12p13.33-q11(chr12:173786-37869301)x3 copy number gain See cases [RCV000449191] Chr12:173786..37869301 [GRCh37]
Chr12:12p13.33-q11		 pathogenic
GRCh37/hg19 12p13.2(chr12:10183511-10373521)x3 copy number gain See cases [RCV000449122] Chr12:10183511..10373521 [GRCh37]
Chr12:12p13.2		 uncertain significance
GRCh37/hg19 12p13.33-12.1(chr12:173786-25286865)x3 copy number gain See cases [RCV000449287] Chr12:173786..25286865 [GRCh37]
Chr12:12p13.33-12.1		 pathogenic
GRCh37/hg19 12p13.33-11.1(chr12:173786-34835837)x3 copy number gain See cases [RCV000447551] Chr12:173786..34835837 [GRCh37]
Chr12:12p13.33-11.1		 pathogenic
GRCh37/hg19 12p13.33-12.2(chr12:173786-20026080)x3 copy number gain See cases [RCV000446050] Chr12:173786..20026080 [GRCh37]
Chr12:12p13.33-12.2		 pathogenic
NM_197947.3(CLEC7A):c.482C>T (p.Ser161Leu) single nucleotide variant not provided [RCV000424017] Chr12:10125307 [GRCh38]
Chr12:10277906 [GRCh37]
Chr12:12p13.2		 benign
GRCh37/hg19 12p13.33-11.1(chr12:189578-34756150) copy number gain See cases [RCV000446017] Chr12:189578..34756150 [GRCh37]
Chr12:12p13.33-11.1		 pathogenic
NM_197947.3(CLEC7A):c.*2A>G single nucleotide variant not specified [RCV000455374] Chr12:10118456 [GRCh38]
Chr12:10271055 [GRCh37]
Chr12:12p13.2		 benign
GRCh37/hg19 12p13.33-q24.33(chr12:173787-133777902)x3 copy number gain See cases [RCV000510482] Chr12:173787..133777902 [GRCh37]
Chr12:12p13.33-q24.33		 pathogenic
GRCh37/hg19 12p13.33-11.1(chr12:565369-34835837)x3 copy number gain See cases [RCV000511580] Chr12:565369..34835837 [GRCh37]
Chr12:12p13.33-11.1		 likely pathogenic
GRCh37/hg19 12p13.33-q24.33(chr12:173787-133777902) copy number gain See cases [RCV000511643] Chr12:173787..133777902 [GRCh37]
Chr12:12p13.33-q24.33		 pathogenic
GRCh37/hg19 12p13.33-13.2(chr12:173786-11677456)x3 copy number gain See cases [RCV000510853] Chr12:173786..11677456 [GRCh37]
Chr12:12p13.33-13.2		 pathogenic
GRCh37/hg19 12p13.33-11.22(chr12:173786-28219229)x3 copy number gain See cases [RCV000510961] Chr12:173786..28219229 [GRCh37]
Chr12:12p13.33-11.22		 pathogenic
NM_197947.3(CLEC7A):c.414A>G (p.Leu138=) single nucleotide variant Familial chronic mucocutaneous candidiasis [RCV000768185] Chr12:10125375 [GRCh38]
Chr12:10277974 [GRCh37]
Chr12:12p13.2		 uncertain significance
GRCh37/hg19 12p13.33-11.1(chr12:173786-34835837)x2,3 copy number gain not provided [RCV000683478] Chr12:173786..34835837 [GRCh37]
Chr12:12p13.33-11.1		 pathogenic
GRCh37/hg19 12p13.33-q11(chr12:173786-37869107)x3 copy number gain not provided [RCV000683480] Chr12:173786..37869107 [GRCh37]
Chr12:12p13.33-q11		 pathogenic
GRCh37/hg19 12p13.33-11.1(chr12:173786-34835837)x3 copy number gain not provided [RCV000683479] Chr12:173786..34835837 [GRCh37]
Chr12:12p13.33-11.1		 pathogenic
GRCh37/hg19 12p13.33-q24.33(chr12:191619-133777645)x3 copy number gain not provided [RCV000750246] Chr12:191619..133777645 [GRCh37]
Chr12:12p13.33-q24.33		 pathogenic
GRCh37/hg19 12p13.33-q24.33(chr12:621220-133779118)x3 copy number gain not provided [RCV000750253] Chr12:621220..133779118 [GRCh37]
Chr12:12p13.33-q24.33		 pathogenic
GRCh37/hg19 12p13.33-11.21(chr12:191619-31733044)x3 copy number gain not provided [RCV000750245] Chr12:191619..31733044 [GRCh37]
Chr12:12p13.33-11.21		 pathogenic
NM_197947.3(CLEC7A):c.397C>T (p.Leu133=) single nucleotide variant Familial chronic mucocutaneous candidiasis [RCV002503078]|not provided [RCV000971790] Chr12:10125392 [GRCh38]
Chr12:10277991 [GRCh37]
Chr12:12p13.2		 benign|likely benign
GRCh37/hg19 12p13.33-12.3(chr12:189216-15001420) copy number gain not provided [RCV000767817] Chr12:189216..15001420 [GRCh37]
Chr12:12p13.33-12.3		 pathogenic
NM_197947.3(CLEC7A):c.668T>G (p.Ile223Ser) single nucleotide variant not provided [RCV000893765] Chr12:10118534 [GRCh38]
Chr12:10271133 [GRCh37]
Chr12:12p13.2		 benign
GRCh37/hg19 12p13.33-q11(chr12:274676-37869301)x4 copy number gain not provided [RCV001006470] Chr12:274676..37869301 [GRCh37]
Chr12:12p13.33-q11		 pathogenic
NM_197947.3(CLEC7A):c.739A>T (p.Met247Leu) single nucleotide variant not provided [RCV000891897] Chr12:10118463 [GRCh38]
Chr12:10271062 [GRCh37]
Chr12:12p13.2		 likely benign
GRCh37/hg19 12p13.33-11.1(chr12:173786-34496628)x3 copy number gain not provided [RCV000847209] Chr12:173786..34496628 [GRCh37]
Chr12:12p13.33-11.1		 pathogenic
NM_197947.3(CLEC7A):c.189C>T (p.Val63=) single nucleotide variant not provided [RCV000919748] Chr12:10127760 [GRCh38]
Chr12:10280359 [GRCh37]
Chr12:12p13.2		 likely benign
NM_197947.3(CLEC7A):c.547C>T (p.Leu183Phe) single nucleotide variant not provided [RCV000890139] Chr12:10123309 [GRCh38]
Chr12:10275908 [GRCh37]
Chr12:12p13.2		 benign
NM_197947.3(CLEC7A):c.493-2A>G single nucleotide variant Familial chronic mucocutaneous candidiasis [RCV001334729] Chr12:10123365 [GRCh38]
Chr12:10275964 [GRCh37]
Chr12:12p13.2		 pathogenic
GRCh37/hg19 12p13.2(chr12:10204668-10277568)x1 copy number loss not provided [RCV001259127] Chr12:10204668..10277568 [GRCh37]
Chr12:12p13.2		 uncertain significance
NM_197947.3(CLEC7A):c.536T>C (p.Phe179Ser) single nucleotide variant Familial chronic mucocutaneous candidiasis [RCV001329912] Chr12:10123320 [GRCh38]
Chr12:10275919 [GRCh37]
Chr12:12p13.2		 uncertain significance
GRCh37/hg19 12p13.33-11.1(chr12:173786-34835837) copy number gain not specified [RCV002052957] Chr12:173786..34835837 [GRCh37]
Chr12:12p13.33-11.1		 pathogenic
GRCh37/hg19 12p13.33-12.1(chr12:173786-25286865) copy number gain not specified [RCV002052955] Chr12:173786..25286865 [GRCh37]
Chr12:12p13.33-12.1		 pathogenic
GRCh37/hg19 12p13.33-q11(chr12:173786-37869301) copy number gain not specified [RCV002052958] Chr12:173786..37869301 [GRCh37]
Chr12:12p13.33-q11		 pathogenic
GRCh37/hg19 12p13.31-13.2(chr12:10049346-10322120)x3 copy number gain not provided [RCV002473879] Chr12:10049346..10322120 [GRCh37]
Chr12:12p13.31-13.2		 uncertain significance
NM_197947.3(CLEC7A):c.244G>A (p.Gly82Ser) single nucleotide variant Inborn genetic diseases [RCV002734641] Chr12:10126667 [GRCh38]
Chr12:10279266 [GRCh37]
Chr12:12p13.2		 uncertain significance
NM_197947.3(CLEC7A):c.304G>C (p.Asp102His) single nucleotide variant Inborn genetic diseases [RCV002840344] Chr12:10126607 [GRCh38]
Chr12:10279206 [GRCh37]
Chr12:12p13.2		 uncertain significance
NM_197947.3(CLEC7A):c.704T>C (p.Val235Ala) single nucleotide variant Inborn genetic diseases [RCV002753161] Chr12:10118498 [GRCh38]
Chr12:10271097 [GRCh37]
Chr12:12p13.2		 uncertain significance
NM_197947.3(CLEC7A):c.407T>G (p.Met136Arg) single nucleotide variant Inborn genetic diseases [RCV002773749] Chr12:10125382 [GRCh38]
Chr12:10277981 [GRCh37]
Chr12:12p13.2		 uncertain significance
NM_197947.3(CLEC7A):c.131G>A (p.Arg44His) single nucleotide variant Inborn genetic diseases [RCV002977716] Chr12:10127818 [GRCh38]
Chr12:10280417 [GRCh37]
Chr12:12p13.2		 uncertain significance
NM_197947.3(CLEC7A):c.385A>G (p.Lys129Glu) single nucleotide variant Inborn genetic diseases [RCV002709650] Chr12:10125404 [GRCh38]
Chr12:10278003 [GRCh37]
Chr12:12p13.2		 uncertain significance
NM_197947.3(CLEC7A):c.530A>C (p.Asn177Thr) single nucleotide variant Inborn genetic diseases [RCV002645531] Chr12:10123326 [GRCh38]
Chr12:10275925 [GRCh37]
Chr12:12p13.2		 uncertain significance
NM_197947.3(CLEC7A):c.673G>A (p.Val225Met) single nucleotide variant Inborn genetic diseases [RCV002764281] Chr12:10118529 [GRCh38]
Chr12:10271128 [GRCh37]
Chr12:12p13.2		 uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2657
Count of miRNA genes:887
Interacting mature miRNAs:1039
Transcripts:ENST00000298523, ENST00000304084, ENST00000310002, ENST00000349926, ENST00000353231, ENST00000396484, ENST00000465100, ENST00000525605, ENST00000528799, ENST00000529761, ENST00000531192, ENST00000533022, ENST00000534609
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
D12S1690  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371210,280,727 - 10,281,002UniSTSGRCh37
Build 361210,171,994 - 10,172,269RGDNCBI36
Celera1215,441,407 - 15,441,682RGD
HuRef1210,023,871 - 10,024,148UniSTS
Marshfield Genetic Map1220.27RGD
Marshfield Genetic Map1220.27UniSTS
Genethon Genetic Map1221.8UniSTS
deCODE Assembly Map1224.62UniSTS
D5S2354  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map1q21UniSTS
Cytogenetic Map9q33.3UniSTS
Cytogenetic Map21q22.3UniSTS
Cytogenetic Map19p13.3UniSTS
Cytogenetic Map19q13.3UniSTS
Cytogenetic Map7q21.13UniSTS
Cytogenetic Map19p13.11UniSTS
Cytogenetic Map17q25.2UniSTS
Cytogenetic Map5q12.1UniSTS
Cytogenetic Map1p36.22UniSTS
Cytogenetic Map7q22.1UniSTS
Cytogenetic Map1p35.1UniSTS
Cytogenetic Map12p13.2UniSTS
Cytogenetic Map12q13.3UniSTS
Cytogenetic Map19q13.1UniSTS
Cytogenetic Map7p11.2UniSTS
Cytogenetic Map18p11.21UniSTS
Cytogenetic Map3p24.2UniSTS
Cytogenetic Map18p11.32UniSTS
Cytogenetic Map9p12UniSTS
Cytogenetic Map13q12.11UniSTS
Cytogenetic Map8p21.2UniSTS
Cytogenetic Map14q24.3UniSTS
Cytogenetic Map17q12UniSTS
Cytogenetic Map16q22UniSTS
Cytogenetic Map7q11.23UniSTS
Cytogenetic Map3p21.31UniSTS
Cytogenetic Map2p15UniSTS
Cytogenetic Map19p13.2UniSTS
Cytogenetic Map19p13.13UniSTS
Cytogenetic Map16p11.2UniSTS
Cytogenetic Map19q13.33-q13.41UniSTS
Cytogenetic Map6p23UniSTS
Cytogenetic Map12q14.1UniSTS
Cytogenetic Map1p36.3UniSTS
Cytogenetic Map19q13.41UniSTS
Cytogenetic Map1q21.3UniSTS
Cytogenetic Map6pter-p12.1UniSTS
Cytogenetic Map5q35.3UniSTS
Cytogenetic Map12q24.11UniSTS
GDB:434012  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map21q22.2UniSTS
Cytogenetic Map3p24.2UniSTS
Cytogenetic Map7p14.1UniSTS
Cytogenetic Map5q31.2UniSTS
Cytogenetic Map1p36.32UniSTS
Cytogenetic Map2p25.1UniSTS
Cytogenetic Map22q11.22UniSTS
Cytogenetic Map14q32.3UniSTS
Cytogenetic Map19p13.2UniSTS
Cytogenetic Map17q11UniSTS
Cytogenetic Map17q21UniSTS
Cytogenetic Map9q34.13UniSTS
Cytogenetic Map10p13UniSTS
Cytogenetic Map3q27UniSTS
Cytogenetic Map14q22.3UniSTS
Cytogenetic Map7q22.1UniSTS
Cytogenetic Map9q34.3UniSTS
Cytogenetic Map4q32.2UniSTS
Cytogenetic Map1p34.2UniSTS
Cytogenetic Map12p13.31UniSTS
Cytogenetic Map3p21.1UniSTS
Cytogenetic Map10p15.3UniSTS
Cytogenetic Map19q13.13UniSTS
Cytogenetic Map17q21.33UniSTS
Cytogenetic Map22q13.33UniSTS
Cytogenetic Map5q23.3UniSTS
Cytogenetic Map16q22.1UniSTS
Cytogenetic Map12q24.13UniSTS
Cytogenetic MapXp11.23UniSTS
Cytogenetic Map19q13.3UniSTS
Cytogenetic Map9q34.11UniSTS
Cytogenetic Map1q24UniSTS
Cytogenetic Map16p11.2UniSTS
Cytogenetic Map14q24.3UniSTS
Cytogenetic Map19p13UniSTS
Cytogenetic Map7q21.13UniSTS
Cytogenetic Map19p13.3UniSTS
Cytogenetic Map17q22UniSTS
Cytogenetic Map2q31.2-q33.1UniSTS
Cytogenetic Map17q12UniSTS
Cytogenetic Map15q25.2UniSTS
Cytogenetic Map19q13.43UniSTS
Cytogenetic Map2p13.1UniSTS
Cytogenetic Map5q35.3UniSTS
Cytogenetic Map1p36.13UniSTS
Cytogenetic Map19q13.12UniSTS
Cytogenetic Map2p13.3UniSTS
Cytogenetic Map20q13.13UniSTS
Cytogenetic Map16q24UniSTS
Cytogenetic Map19q13UniSTS
Cytogenetic Map8p11.21UniSTS
Cytogenetic Map14q32.33UniSTS
Cytogenetic Map8q24.11UniSTS
Cytogenetic Map10q23.1UniSTS
Cytogenetic Map4q12UniSTS
Cytogenetic Map17p13.2UniSTS
Cytogenetic Map2q13UniSTS
Cytogenetic Map2p11.2UniSTS
Cytogenetic Map5q31.1UniSTS
Cytogenetic MapYp11.2UniSTS
Cytogenetic Map1q23.1UniSTS
Cytogenetic Map1q21.3UniSTS
Cytogenetic Map8p11.22UniSTS
Cytogenetic Map19q13.32UniSTS
Cytogenetic Map4q28.2UniSTS
Cytogenetic Map22q12.3UniSTS
Cytogenetic Map18p11.21UniSTS
Cytogenetic Map19p13.11UniSTS
Cytogenetic Map1p32.3UniSTS
Cytogenetic Map9p13.2UniSTS
Cytogenetic Map17q25UniSTS
Cytogenetic Map17q21.31UniSTS
Cytogenetic Map11p13UniSTS
Cytogenetic Map5q21UniSTS
Cytogenetic Map13q12.11UniSTS
Cytogenetic Map1q22UniSTS
Cytogenetic Map1p22.1UniSTS
Cytogenetic Map1p36.21UniSTS
Cytogenetic Map9q13-q21UniSTS
Cytogenetic Map16p13.3UniSTS
Cytogenetic Map7q22UniSTS
Cytogenetic Map8q24UniSTS
Cytogenetic Map7q36.1UniSTS
Cytogenetic Map2p15UniSTS
Cytogenetic Map4p16.3UniSTS
Cytogenetic Map3p25.3UniSTS
Cytogenetic Map2p23.3UniSTS
Cytogenetic Map8q24.3UniSTS
Cytogenetic Map17p13.3UniSTS
Cytogenetic Map5q33.3UniSTS
Cytogenetic Map21q22.3UniSTS
Cytogenetic Map3q26.2UniSTS
Cytogenetic Map3q23UniSTS
Cytogenetic Map5q32UniSTS
Cytogenetic Map17q21.1UniSTS
Cytogenetic Map15q21UniSTS
Cytogenetic Map6p21.3UniSTS
Cytogenetic Map17q11.2UniSTS
Cytogenetic Map8p11.2UniSTS
Cytogenetic Map17q24UniSTS
Cytogenetic Map19q13.3-q13.4UniSTS
Cytogenetic Map15q11.2UniSTS
Cytogenetic Map22q11.23UniSTS
Cytogenetic Map1p35.3UniSTS
Cytogenetic Map2q33-q34UniSTS
Cytogenetic Map17q25.2UniSTS
Cytogenetic Map1p35.1UniSTS
Cytogenetic Map22q11.2UniSTS
Cytogenetic Map2p16.1UniSTS
Cytogenetic Map1p36.22UniSTS
Cytogenetic Map11q23.1UniSTS
Cytogenetic Map22q13.1UniSTS
Cytogenetic Map12p13.2UniSTS
Cytogenetic Map22q11.21UniSTS
Cytogenetic Map7q21.3UniSTS
Cytogenetic Map1p36.11UniSTS
Cytogenetic Map5q13.2UniSTS
Cytogenetic Map10q11.22UniSTS
Cytogenetic Map3p25.1UniSTS
Cytogenetic Map22q13.2UniSTS
Cytogenetic Map1p13.3UniSTS
Cytogenetic Map1p21.3-p13.1UniSTS
Cytogenetic Map11q13.2UniSTS
Cytogenetic Map7q11.23UniSTS
Cytogenetic Map12q13.3UniSTS
Cytogenetic Map3q26.33UniSTS
Cytogenetic Map10q26.13UniSTS
Cytogenetic Map7p22UniSTS
Cytogenetic Map11q13UniSTS
Cytogenetic Map7q21-q22UniSTS
Cytogenetic Map17q25.3UniSTS
Cytogenetic Map19q13.33UniSTS
Cytogenetic Map4q22.1UniSTS
Cytogenetic Map20p13UniSTS
Cytogenetic Map16p13.12UniSTS
Cytogenetic Map5q12.3UniSTS
Cytogenetic Map2q33.2UniSTS
Cytogenetic Map6p22.3-p22.1UniSTS
Cytogenetic Map19q13.4UniSTS
Cytogenetic Map1p35-p34.3UniSTS
Cytogenetic Map7p11.2UniSTS
Cytogenetic Map5q35.1UniSTS
Cytogenetic Map12p13.3UniSTS
Cytogenetic Map2q14.3UniSTS
Cytogenetic Map5q31UniSTS
Cytogenetic Map11q13.5UniSTS
Cytogenetic Map13q14.3UniSTS
Cytogenetic Map7q32.1UniSTS
Cytogenetic Map14q32.31UniSTS
Cytogenetic Map12p13.1UniSTS
Cytogenetic Map14q32.12UniSTS
Cytogenetic Map6q22.31UniSTS
Cytogenetic Map3q27.1UniSTS
Cytogenetic Map1p34.1UniSTS
Cytogenetic Map11q13.1UniSTS
Cytogenetic Map10p14UniSTS
Cytogenetic MapXq13.2UniSTS
Cytogenetic Map9q21.13UniSTS
Cytogenetic Map8q21.11UniSTS
Cytogenetic Map4p16.1UniSTS
Cytogenetic Map3q13.13UniSTS
Cytogenetic Map3p21UniSTS
Cytogenetic Map2q35UniSTS
Cytogenetic Map1p36.33UniSTS
Cytogenetic Map18q12.1UniSTS
Cytogenetic Map14q11.2UniSTS
Cytogenetic Map5q31.3UniSTS
Cytogenetic MapXp11.22UniSTS
Cytogenetic Map12q24.31UniSTS
Cytogenetic Map12p12UniSTS
Cytogenetic Map11q24UniSTS
Cytogenetic Map6p21.1UniSTS
Cytogenetic Map7p15.3UniSTS
Cytogenetic Map14q31.1UniSTS
Cytogenetic Map15q22UniSTS
Cytogenetic Map1q31-q41UniSTS
Cytogenetic Map5q23.2UniSTS
Cytogenetic Map2q24.2UniSTS
Cytogenetic Map6q22-q23UniSTS
Cytogenetic Map1q24-q25.3UniSTS
Cytogenetic Map20q11.22-q11.23UniSTS
Cytogenetic Map8q24.22UniSTS
Cytogenetic Map17q25.1UniSTS
Cytogenetic Map1pter-q31.3UniSTS
Cytogenetic Map11q22-q23UniSTS
Cytogenetic Map12q24.2-q24.31UniSTS
Cytogenetic MapXq13.1UniSTS
Cytogenetic Map1q25UniSTS
Cytogenetic Map15q26.3UniSTS
Cytogenetic Map15q13.1UniSTS
Cytogenetic Map7q11.21UniSTS
Cytogenetic Map16p13UniSTS
Cytogenetic Map18q21UniSTS
Cytogenetic Map4p13UniSTS
Cytogenetic Map8q22.3UniSTS
Cytogenetic Map19p12UniSTS
Cytogenetic Map16p12.1UniSTS
Cytogenetic Map10p11.1UniSTS
Cytogenetic Map2q12.3UniSTS
Cytogenetic Map1p21.2UniSTS
Cytogenetic Map19q13.11UniSTS
Cytogenetic Map2q11.2-q12UniSTS
Cytogenetic MapXp22.12UniSTS
Cytogenetic Map20q11.23UniSTS
Cytogenetic Map19q13.31UniSTS
Cytogenetic Map13q32.2UniSTS
Cytogenetic Map3q25.33UniSTS
Cytogenetic Map1q32.1UniSTS
Cytogenetic Map10q25.3UniSTS
Cytogenetic Map15q14-q15UniSTS
Cytogenetic Map1p34UniSTS
Cytogenetic Map1q21UniSTS
Cytogenetic Map3p21.32UniSTS
Cytogenetic Map6q25.1UniSTS
Cytogenetic Map11p15.5UniSTS
Cytogenetic Map11q12.2UniSTS
Cytogenetic Map7p13-p12UniSTS
Cytogenetic Map1p36-p35UniSTS
Cytogenetic MapXq25UniSTS
Cytogenetic Map12q24.33UniSTS
Cytogenetic Map12q23UniSTS
Cytogenetic Map4q13UniSTS
Cytogenetic MapXq24UniSTS
Cytogenetic MapXq12UniSTS
Cytogenetic Map17q21.2UniSTS
Cytogenetic Map19p13.13UniSTS
Cytogenetic Map19q13.41UniSTS
Cytogenetic Map12q13.13UniSTS
Cytogenetic Map11q14.1UniSTS
Cytogenetic Map19q13.1UniSTS
Cytogenetic Map16q22.3UniSTS
Cytogenetic MapXq21.3UniSTS
Cytogenetic Map2p15-p13UniSTS
Cytogenetic Map3p14.1UniSTS
Cytogenetic Map1q25.2UniSTS
Cytogenetic Map2p12UniSTS
Cytogenetic Map6p12.3-p11.2UniSTS
Cytogenetic Map6q27UniSTS
Cytogenetic Map9q34UniSTS
Cytogenetic Map19q13.42UniSTS
Cytogenetic Map1q21.2UniSTS
Cytogenetic Map12q13.12UniSTS
Cytogenetic Map4p16UniSTS
Cytogenetic Map2p25.1-p24.1UniSTS
Cytogenetic Map7q34UniSTS
Cytogenetic Map5p13.1UniSTS
Cytogenetic Map22q11.1UniSTS
Cytogenetic Map5q13UniSTS
Cytogenetic Map15q22.31UniSTS
Cytogenetic MapXp22.11UniSTS
Cytogenetic Map12q24UniSTS
Cytogenetic Map1p21UniSTS
Cytogenetic Map16q24.1UniSTS
Cytogenetic Map5q34UniSTS
Cytogenetic Map6q21UniSTS
Cytogenetic Map10q24.32UniSTS
Cytogenetic Map7p13UniSTS
Cytogenetic Map7p22.1UniSTS
Cytogenetic Map18q21.1UniSTS
Cytogenetic Map3q29UniSTS
Cytogenetic Map16p13.2UniSTS
Cytogenetic Map17p12UniSTS
Cytogenetic Map16q23.1UniSTS
Cytogenetic Map9q22.1-q22.2UniSTS
Cytogenetic Map14q32UniSTS
Cytogenetic Map1p36.3-p36.2UniSTS
Cytogenetic Map4q28.1UniSTS
Cytogenetic Map12q13.1-q13.2UniSTS
Cytogenetic Map1p31UniSTS
Cytogenetic Map19q13.2UniSTS
Cytogenetic Map5p15.33UniSTS
Cytogenetic Map2q31.1UniSTS
Cytogenetic Map8p22UniSTS
Cytogenetic Map1p34.3UniSTS
Cytogenetic Map18q21.32UniSTS
Cytogenetic Map15q15.3UniSTS
Cytogenetic Map15q21.3UniSTS
Cytogenetic Map13q14.11UniSTS
Cytogenetic Map10q22.2UniSTS
Cytogenetic Map2q33.1UniSTS
Cytogenetic Map2q36.1UniSTS
Cytogenetic Map2q11.2UniSTS
Cytogenetic Map1q42.13UniSTS
Cytogenetic Map1q21.1UniSTS
Cytogenetic Map17q21.32UniSTS
Cytogenetic Map11q23.3UniSTS
Cytogenetic Map18q11.1UniSTS
Cytogenetic Map11q25UniSTS
Cytogenetic Map20q11.22UniSTS
Cytogenetic Map14q12UniSTS
Cytogenetic Map6pter-p12.1UniSTS
Cytogenetic Map13q12-q14UniSTS
Cytogenetic Map3p21.3UniSTS
Cytogenetic Map12qUniSTS
Cytogenetic Map5q13.1UniSTS
Cytogenetic Map7p22.3UniSTS
Cytogenetic Map16p12.2UniSTS
Cytogenetic Map13q34UniSTS
Cytogenetic Map17q23.2UniSTS
Cytogenetic Map3q25.1UniSTS
Cytogenetic Map14q31UniSTS
D11S2560  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map10p12.1-p11.2UniSTS
Cytogenetic Map22q13.1UniSTS
Cytogenetic Map12p13.3UniSTS
Cytogenetic Map20q13.3UniSTS
Cytogenetic Map19p13.12UniSTS
Cytogenetic Map8q21.13UniSTS
Cytogenetic Map18p11.22UniSTS
Cytogenetic Map9p13.3-p12UniSTS
Cytogenetic Map10p12.1UniSTS
Cytogenetic Map19q13.11UniSTS
Cytogenetic Map22q11.23UniSTS
Cytogenetic Map5q23.3UniSTS
Cytogenetic Map15q21.1UniSTS
Cytogenetic Map14q24.2UniSTS
Cytogenetic Map15q13UniSTS
Cytogenetic Map6q25.3UniSTS
Cytogenetic Map8p22-p21UniSTS
Cytogenetic Map1p34.1UniSTS
Cytogenetic Map4p16.3UniSTS
Cytogenetic Map17q12UniSTS
Cytogenetic Map15q21.3UniSTS
Cytogenetic Map12q24.31UniSTS
Cytogenetic Map2p13.1UniSTS
Cytogenetic Map19q13.12UniSTS
Cytogenetic Map10q24.2UniSTS
Cytogenetic Map2p23.3UniSTS
Cytogenetic Map19q13.42UniSTS
Cytogenetic Map6q16.2UniSTS
Cytogenetic MapXq26.3UniSTS
Cytogenetic Map9q22.33UniSTS
Cytogenetic Map7q21.2UniSTS
Cytogenetic Map16p11.2UniSTS
Cytogenetic Map8q24.13UniSTS
Cytogenetic Map4q25UniSTS
Cytogenetic Map12p13.33UniSTS
Cytogenetic Map19p13.3UniSTS
Cytogenetic Map5q23UniSTS
Cytogenetic Map16p13.3UniSTS
Cytogenetic Map1q32.1UniSTS
Cytogenetic Map3p21.2UniSTS
Cytogenetic Map19q13.32UniSTS
Cytogenetic Map1p13.2UniSTS
Cytogenetic Map6q27UniSTS
Cytogenetic Map2p13.3UniSTS
Cytogenetic Map2p25.1UniSTS
Cytogenetic Map16q24.1UniSTS
Cytogenetic Map7q22.1UniSTS
Cytogenetic Map22q11.21UniSTS
Cytogenetic Map17q21.31UniSTS
Cytogenetic Map2q12.1UniSTS
Cytogenetic Map9q13-q21UniSTS
Cytogenetic Map19p12UniSTS
Cytogenetic Map2p15UniSTS
Cytogenetic Map8q11.21UniSTS
Cytogenetic Map15q15UniSTS
Cytogenetic Map1p36.21UniSTS
Cytogenetic Map12q23-q24.1UniSTS
Cytogenetic Map1p34.2UniSTS
Cytogenetic Map10q23.2UniSTS
Cytogenetic Map3q23UniSTS
Cytogenetic Map19p13.2UniSTS
Cytogenetic Map15q21UniSTS
Cytogenetic Map9q34.2UniSTS
Cytogenetic Map17q25.1UniSTS
Cytogenetic Map2q35UniSTS
Cytogenetic Map6p21.1UniSTS
Cytogenetic Map22q12.2UniSTS
Cytogenetic Map1p32UniSTS
Cytogenetic Map1p35.1UniSTS
Cytogenetic Map7p15.2UniSTS
Cytogenetic Map12p13.2UniSTS
Cytogenetic Map16q12.2UniSTS
Cytogenetic Map3q26.2-q27UniSTS
Cytogenetic Map2p21UniSTS
Cytogenetic Map8p23.1UniSTS
Cytogenetic Map17p11.2UniSTS
Cytogenetic MapXp11.2UniSTS
Cytogenetic Map20q11.2UniSTS
Cytogenetic Map3q26.2UniSTS
Cytogenetic Map4q22.1UniSTS
Cytogenetic Map4p15.32UniSTS
Cytogenetic Map7q36.3UniSTS
Cytogenetic Map2q33.2UniSTS
Cytogenetic Map20q13.13UniSTS
Cytogenetic Map10p13UniSTS
Cytogenetic Map19q13.4UniSTS
Cytogenetic Map1p36.11-p34.2UniSTS
Cytogenetic Map1q21.3UniSTS
Cytogenetic Map8p21.3UniSTS
Cytogenetic Map18p11.32UniSTS
Cytogenetic Map17p13.2UniSTS
Cytogenetic Map8q22.1UniSTS
Cytogenetic Map16q22.1UniSTS
Cytogenetic Map3p21UniSTS
Cytogenetic Map14q13.2UniSTS
Cytogenetic Map8q12.1UniSTS
Cytogenetic Map3p22.3UniSTS
Cytogenetic Map8q24.3UniSTS
Cytogenetic Map13q12.11UniSTS
Cytogenetic Map12p12UniSTS
Cytogenetic Map22q13.33UniSTS
Cytogenetic Map14q31.1UniSTS
Cytogenetic Map21q22.2UniSTS
Cytogenetic Map2p11.2UniSTS
Cytogenetic Map18q12.3UniSTS
Cytogenetic Map12q13.3UniSTS
Cytogenetic Map2p16.1UniSTS
Cytogenetic Map9q34.11UniSTS
Cytogenetic Map12q13.13UniSTS
Cytogenetic Map8q24.21UniSTS
Cytogenetic Map12q22-q23.1UniSTS
Cytogenetic Map3q26.33UniSTS
Cytogenetic Map1q23UniSTS
Cytogenetic Map11p15.1UniSTS
Cytogenetic Map7q32UniSTS
Cytogenetic Map11p13UniSTS
Cytogenetic Map5p13.1UniSTS
Cytogenetic Map18q21UniSTS
Cytogenetic Map7p14-p13UniSTS
Cytogenetic Map11q13UniSTS
Cytogenetic Map11q22-q23UniSTS
Cytogenetic Map19p13.3-p13.2UniSTS
Cytogenetic Map6q22-q23UniSTS
Cytogenetic Map7p14.3UniSTS
Cytogenetic Map1q21.1UniSTS
Cytogenetic Map14q32.31UniSTS
Cytogenetic Map11q13.1-q13.3UniSTS
Cytogenetic Map1q32UniSTS
Cytogenetic Map6p24UniSTS
Cytogenetic Map10q25UniSTS
Cytogenetic Map8q22.3UniSTS
Cytogenetic Map2p14UniSTS
Cytogenetic Map1p36.31UniSTS
Cytogenetic Map6q13UniSTS
Cytogenetic Map2p25.2UniSTS
Cytogenetic Map1p31.1UniSTS
Cytogenetic Map15q14-q15UniSTS
Cytogenetic Map9q31.1UniSTS
Cytogenetic Map21q22.11UniSTS
Cytogenetic Map7p15.3UniSTS
Cytogenetic Map5q35.3UniSTS
Cytogenetic Map1p36.32UniSTS
Cytogenetic Map15q11.2UniSTS
Cytogenetic Map12p12.1UniSTS
Cytogenetic MapXq25UniSTS
Cytogenetic MapXq28UniSTS
Cytogenetic Map19q13.3UniSTS
Cytogenetic Map8p21.1UniSTS
Cytogenetic Map3p26.1-p25.1UniSTS
Cytogenetic Map6q16.3UniSTS
Cytogenetic Map3q21.3UniSTS
Cytogenetic MapXq27.1UniSTS
Cytogenetic Map3q12.3UniSTS
Cytogenetic Map3q25.31UniSTS
Cytogenetic Map17q25.3UniSTS
Cytogenetic Map17p13.3UniSTS
Cytogenetic Map11q12.3UniSTS
Cytogenetic Map11q13.4UniSTS
Cytogenetic Map19q13.1UniSTS
Cytogenetic Map1q42.3UniSTS
Cytogenetic Map22q13.2UniSTS
Cytogenetic Map12q13.12UniSTS
Cytogenetic Map2q33.1UniSTS
Cytogenetic Map11q23.3UniSTS
Cytogenetic Map4q31.1UniSTS
Cytogenetic Map14q32.33UniSTS
Cytogenetic Map9q33.2UniSTS
Cytogenetic Map5q13UniSTS
Cytogenetic Map8q12UniSTS
Cytogenetic Map15q22.31UniSTS
Cytogenetic Map17q24.3UniSTS
Cytogenetic Map5q12.3UniSTS
Cytogenetic Map1p32.3UniSTS
Cytogenetic Map6q21UniSTS
Cytogenetic Map10q24.32UniSTS
Cytogenetic Map19q13UniSTS
Cytogenetic Map17q21UniSTS
Cytogenetic Map14q32.32UniSTS
Cytogenetic Map16p13.2UniSTS
Cytogenetic Map1p36.33UniSTS
Cytogenetic Map10q11.22UniSTS
Cytogenetic Map1p34UniSTS
Cytogenetic Map6q14.1UniSTS
Cytogenetic Map14q32UniSTS
Cytogenetic Map1p36.3-p36.2UniSTS
Cytogenetic Map2q11.2UniSTS
Cytogenetic Map1p32-p31UniSTS
Cytogenetic Map7q34UniSTS
Cytogenetic Map5q33.1UniSTS
Cytogenetic Map2q21.1UniSTS
Cytogenetic Map19q13.41UniSTS
Cytogenetic Map18p11.21UniSTS
Cytogenetic Map10q26.11UniSTS
Cytogenetic Map12q14.3UniSTS
Cytogenetic Map5q34UniSTS
Cytogenetic Map2q36.1UniSTS
Cytogenetic Map15q25.2UniSTS
Cytogenetic Map1q21UniSTS
Cytogenetic Map4p16.1UniSTS
Cytogenetic Map9q32UniSTS
Cytogenetic Map15q24UniSTS
Cytogenetic Map1p34.3UniSTS
Cytogenetic Map12q21UniSTS
Cytogenetic Map19q13.43UniSTS
Cytogenetic Map1p35-p34UniSTS
Cytogenetic Map9q34.1UniSTS
Cytogenetic Map9q22.2UniSTS
Cytogenetic MapXp22UniSTS
Cytogenetic Map13q14UniSTS
Cytogenetic Map2q33UniSTS
Cytogenetic Map16p12.2UniSTS
Cytogenetic Map10q11.23UniSTS
Cytogenetic Map20q13.31UniSTS
Cytogenetic Map3p25.2UniSTS
Cytogenetic Map5q11UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component
High
Medium 258 1190 125 66 1149 20 1071 51 701 62 144 681 47 571 686 1
Low 2073 1694 1535 516 318 402 2920 1759 2494 289 1201 759 120 632 1857 4
Below cutoff 97 105 63 38 257 41 348 380 532 65 106 165 7 1 1 245

Sequence

Nucleotide Sequences
RefSeq Transcripts NG_016291 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_022570 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_197947 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_197948 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_197949 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_197950 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_197954 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_125336 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006719135 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017019822 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017019823 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024449132 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024449133 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047429359 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047429360 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AA361063 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC024224 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF313468 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF313469 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF400595 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF400596 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF400597 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF400598 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF400599 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF400600 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF400601 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF400602 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ312372 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ312373 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK294111 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK295108 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK297028 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK298679 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK298724 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK313247 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY009090 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY026769 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY026770 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY026771 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY358685 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY359002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC013385 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC071746 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC093829 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC093831 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471094 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068266 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CQ779237 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CQ779239 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CR749536 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA193873 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KU178745 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KU178746 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LC369590 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LC369591 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENST00000298523   ⟹   ENSP00000298523
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1210,117,862 - 10,130,153 (-)Ensembl
RefSeq Acc Id: ENST00000304084   ⟹   ENSP00000302569
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1210,116,777 - 10,130,199 (-)Ensembl
RefSeq Acc Id: ENST00000310002   ⟹   ENSP00000312089
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1210,127,327 - 10,130,189 (-)Ensembl
RefSeq Acc Id: ENST00000349926   ⟹   ENSP00000344723
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1210,118,458 - 10,130,082 (-)Ensembl
RefSeq Acc Id: ENST00000353231   ⟹   ENSP00000266456
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1210,116,777 - 10,130,241 (-)Ensembl
RefSeq Acc Id: ENST00000396484   ⟹   ENSP00000379743
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1210,118,068 - 10,130,185 (-)Ensembl
RefSeq Acc Id: ENST00000465100   ⟹   ENSP00000436923
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1210,118,458 - 10,130,082 (-)Ensembl
RefSeq Acc Id: ENST00000525605   ⟹   ENSP00000434954
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1210,127,446 - 10,130,257 (-)Ensembl
RefSeq Acc Id: ENST00000528799
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1210,124,746 - 10,130,183 (-)Ensembl
RefSeq Acc Id: ENST00000529761   ⟹   ENSP00000432876
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1210,116,777 - 10,130,258 (-)Ensembl
RefSeq Acc Id: ENST00000531192   ⟹   ENSP00000434392
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1210,118,549 - 10,130,257 (-)Ensembl
RefSeq Acc Id: ENST00000533022   ⟹   ENSP00000431461
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1210,118,458 - 10,130,082 (-)Ensembl
RefSeq Acc Id: ENST00000534609
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1210,116,777 - 10,130,257 (-)Ensembl
RefSeq Acc Id: NM_022570   ⟹   NP_072092
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381210,116,777 - 10,130,199 (-)NCBI
GRCh371210,269,376 - 10,282,868 (-)NCBI
Build 361210,160,643 - 10,174,135 (-)NCBI Archive
HuRef1210,012,523 - 10,026,010 (-)ENTREZGENE
CHM1_11210,238,652 - 10,252,134 (-)NCBI
T2T-CHM13v2.01210,003,452 - 10,016,867 (-)NCBI
Sequence:
RefSeq Acc Id: NM_197947   ⟹   NP_922938
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381210,116,777 - 10,130,199 (-)NCBI
GRCh371210,269,376 - 10,282,868 (-)ENTREZGENE
Build 361210,160,643 - 10,174,135 (-)NCBI Archive
HuRef1210,012,523 - 10,026,010 (-)ENTREZGENE
CHM1_11210,238,652 - 10,252,134 (-)NCBI
T2T-CHM13v2.01210,003,452 - 10,016,867 (-)NCBI
Sequence:
RefSeq Acc Id: NM_197948   ⟹   NP_922939
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381210,116,777 - 10,130,199 (-)NCBI
GRCh371210,269,376 - 10,282,868 (-)ENTREZGENE
Build 361210,160,643 - 10,174,135 (-)NCBI Archive
HuRef1210,012,523 - 10,026,010 (-)ENTREZGENE
CHM1_11210,238,652 - 10,252,134 (-)NCBI
T2T-CHM13v2.01210,003,452 - 10,016,867 (-)NCBI
Sequence:
RefSeq Acc Id: NM_197949   ⟹   NP_922940
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381210,116,777 - 10,130,199 (-)NCBI
GRCh371210,269,376 - 10,282,868 (-)NCBI
Build 361210,160,643 - 10,174,135 (-)NCBI Archive
HuRef1210,012,523 - 10,026,010 (-)ENTREZGENE
CHM1_11210,238,652 - 10,252,134 (-)NCBI
T2T-CHM13v2.01210,003,452 - 10,016,867 (-)NCBI
Sequence:
RefSeq Acc Id: NM_197950   ⟹   NP_922941
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381210,116,777 - 10,130,199 (-)NCBI
GRCh371210,269,376 - 10,282,868 (-)NCBI
Build 361210,160,643 - 10,174,135 (-)NCBI Archive
HuRef1210,012,523 - 10,026,010 (-)ENTREZGENE
CHM1_11210,238,652 - 10,252,134 (-)NCBI
T2T-CHM13v2.01210,003,452 - 10,016,867 (-)NCBI
Sequence:
RefSeq Acc Id: NM_197954   ⟹   NP_922945
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381210,127,323 - 10,130,199 (-)NCBI
GRCh371210,269,376 - 10,282,868 (-)ENTREZGENE
Build 361210,171,189 - 10,174,135 (-)NCBI Archive
HuRef1210,012,523 - 10,026,010 (-)ENTREZGENE
CHM1_11210,249,193 - 10,252,134 (-)NCBI
T2T-CHM13v2.01210,013,993 - 10,016,867 (-)NCBI
Sequence:
RefSeq Acc Id: NR_125336
RefSeq Status: REVIEWED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381210,116,777 - 10,130,199 (-)NCBI
CHM1_11210,238,652 - 10,252,134 (-)NCBI
T2T-CHM13v2.01210,003,452 - 10,016,867 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006719135   ⟹   XP_006719198
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381210,116,777 - 10,130,199 (-)NCBI
Sequence:
RefSeq Acc Id: XM_024449132   ⟹   XP_024304900
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381210,123,270 - 10,130,199 (-)NCBI
Sequence:
RefSeq Acc Id: XM_024449133   ⟹   XP_024304901
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381210,123,277 - 10,130,199 (-)NCBI
Sequence:
RefSeq Acc Id: XM_047429359   ⟹   XP_047285315
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381210,116,777 - 10,130,304 (-)NCBI
RefSeq Acc Id: XM_047429360   ⟹   XP_047285316
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381210,123,270 - 10,130,199 (-)NCBI
Protein Sequences
Protein RefSeqs NP_072092 (Get FASTA)   NCBI Sequence Viewer  
  NP_922938 (Get FASTA)   NCBI Sequence Viewer  
  NP_922939 (Get FASTA)   NCBI Sequence Viewer  
  NP_922940 (Get FASTA)   NCBI Sequence Viewer  
  NP_922941 (Get FASTA)   NCBI Sequence Viewer  
  NP_922945 (Get FASTA)   NCBI Sequence Viewer  
  XP_006719198 (Get FASTA)   NCBI Sequence Viewer  
  XP_024304900 (Get FASTA)   NCBI Sequence Viewer  
  XP_024304901 (Get FASTA)   NCBI Sequence Viewer  
  XP_047285315 (Get FASTA)   NCBI Sequence Viewer  
  XP_047285316 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAG33923 (Get FASTA)   NCBI Sequence Viewer  
  AAH13385 (Get FASTA)   NCBI Sequence Viewer  
  AAH71746 (Get FASTA)   NCBI Sequence Viewer  
  AAH93829 (Get FASTA)   NCBI Sequence Viewer  
  AAH93831 (Get FASTA)   NCBI Sequence Viewer  
  AAK20114 (Get FASTA)   NCBI Sequence Viewer  
  AAK20115 (Get FASTA)   NCBI Sequence Viewer  
  AAK20116 (Get FASTA)   NCBI Sequence Viewer  
  AAK37473 (Get FASTA)   NCBI Sequence Viewer  
  AAK37474 (Get FASTA)   NCBI Sequence Viewer  
  AAL11711 (Get FASTA)   NCBI Sequence Viewer  
  AAL11712 (Get FASTA)   NCBI Sequence Viewer  
  AAL11713 (Get FASTA)   NCBI Sequence Viewer  
  AAL11714 (Get FASTA)   NCBI Sequence Viewer  
  AAL11715 (Get FASTA)   NCBI Sequence Viewer  
  AAL11716 (Get FASTA)   NCBI Sequence Viewer  
  AAL11717 (Get FASTA)   NCBI Sequence Viewer  
  AAL11718 (Get FASTA)   NCBI Sequence Viewer  
  AAQ89048 (Get FASTA)   NCBI Sequence Viewer  
  AAQ89361 (Get FASTA)   NCBI Sequence Viewer  
  ALQ34203 (Get FASTA)   NCBI Sequence Viewer  
  ALQ34204 (Get FASTA)   NCBI Sequence Viewer  
  BAG36058 (Get FASTA)   NCBI Sequence Viewer  
  BAH11674 (Get FASTA)   NCBI Sequence Viewer  
  BAH11976 (Get FASTA)   NCBI Sequence Viewer  
  BAH12480 (Get FASTA)   NCBI Sequence Viewer  
  BAH12845 (Get FASTA)   NCBI Sequence Viewer  
  BAH12855 (Get FASTA)   NCBI Sequence Viewer  
  BBC70867 (Get FASTA)   NCBI Sequence Viewer  
  BBC70868 (Get FASTA)   NCBI Sequence Viewer  
  CAC43846 (Get FASTA)   NCBI Sequence Viewer  
  CAC43847 (Get FASTA)   NCBI Sequence Viewer  
  CAF63003 (Get FASTA)   NCBI Sequence Viewer  
  CAF63006 (Get FASTA)   NCBI Sequence Viewer  
  CAH18342 (Get FASTA)   NCBI Sequence Viewer  
  EAW96144 (Get FASTA)   NCBI Sequence Viewer  
  EAW96145 (Get FASTA)   NCBI Sequence Viewer  
  EAW96146 (Get FASTA)   NCBI Sequence Viewer  
  EAW96147 (Get FASTA)   NCBI Sequence Viewer  
  EAW96148 (Get FASTA)   NCBI Sequence Viewer  
  EAW96149 (Get FASTA)   NCBI Sequence Viewer  
  EAW96150 (Get FASTA)   NCBI Sequence Viewer  
  EAW96151 (Get FASTA)   NCBI Sequence Viewer  
  EAW96152 (Get FASTA)   NCBI Sequence Viewer  
  EAW96153 (Get FASTA)   NCBI Sequence Viewer  
  EAW96154 (Get FASTA)   NCBI Sequence Viewer  
  EAW96155 (Get FASTA)   NCBI Sequence Viewer  
  Q9BXN2 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_922941   ⟸   NM_197950
- Peptide Label: isoform e
- UniProtKB: Q9BXN2 (UniProtKB/Swiss-Prot),   Q68D78 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_922940   ⟸   NM_197949
- Peptide Label: isoform d
- UniProtKB: Q9BXN2 (UniProtKB/Swiss-Prot),   Q68D78 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_072092   ⟸   NM_022570
- Peptide Label: isoform b
- UniProtKB: Q9BXN2 (UniProtKB/Swiss-Prot),   Q68D78 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_922939   ⟸   NM_197948
- Peptide Label: isoform c
- UniProtKB: Q9BXN2 (UniProtKB/Swiss-Prot),   Q68D78 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_922938   ⟸   NM_197947
- Peptide Label: isoform a
- UniProtKB: Q9H1K3 (UniProtKB/Swiss-Prot),   Q9BXN2 (UniProtKB/Swiss-Prot),   A0A024RAN9 (UniProtKB/TrEMBL),   Q68D78 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_922945   ⟸   NM_197954
- Peptide Label: isoform f
- UniProtKB: Q9BXN2 (UniProtKB/Swiss-Prot),   A0A0S2Z5Q1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006719198   ⟸   XM_006719135
- Peptide Label: isoform X3
- UniProtKB: Q9BXN2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_024304901   ⟸   XM_024449133
- Peptide Label: isoform X5
- UniProtKB: A0A2Z5YRT6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_024304900   ⟸   XM_024449132
- Peptide Label: isoform X2
- UniProtKB: A0A2Z5YRU4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSP00000436923   ⟸   ENST00000465100
RefSeq Acc Id: ENSP00000344723   ⟸   ENST00000349926
RefSeq Acc Id: ENSP00000434392   ⟸   ENST00000531192
RefSeq Acc Id: ENSP00000431461   ⟸   ENST00000533022
RefSeq Acc Id: ENSP00000298523   ⟸   ENST00000298523
RefSeq Acc Id: ENSP00000312089   ⟸   ENST00000310002
RefSeq Acc Id: ENSP00000266456   ⟸   ENST00000353231
RefSeq Acc Id: ENSP00000434954   ⟸   ENST00000525605
RefSeq Acc Id: ENSP00000379743   ⟸   ENST00000396484
RefSeq Acc Id: ENSP00000302569   ⟸   ENST00000304084
RefSeq Acc Id: ENSP00000432876   ⟸   ENST00000529761
RefSeq Acc Id: XP_047285315   ⟸   XM_047429359
- Peptide Label: isoform X1
- UniProtKB: Q9H1K3 (UniProtKB/Swiss-Prot),   A0A024RAN9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_047285316   ⟸   XM_047429360
- Peptide Label: isoform X4
Protein Domains
C-type lectin

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9BXN2-F1-model_v2 AlphaFold Q9BXN2 1-247 view protein structure

Promoters
RGD ID:7223153
Promoter ID:EPDNEW_H17322
Type:initiation region
Name:CLEC7A_1
Description:C-type lectin domain containing 7A
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381210,130,166 - 10,130,226EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:14558 AgrOrtholog
COSMIC CLEC7A COSMIC
Ensembl Genes ENSG00000172243 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSP00000266456 ENTREZGENE
  ENSP00000266456.6 UniProtKB/Swiss-Prot
  ENSP00000298523 ENTREZGENE
  ENSP00000298523.5 UniProtKB/Swiss-Prot
  ENSP00000302569 ENTREZGENE
  ENSP00000302569.8 UniProtKB/Swiss-Prot
  ENSP00000312089 ENTREZGENE
  ENSP00000312089.4 UniProtKB/Swiss-Prot
  ENSP00000344723.5 UniProtKB/Swiss-Prot
  ENSP00000379743 ENTREZGENE
  ENSP00000379743.2 UniProtKB/Swiss-Prot
  ENSP00000431461 ENTREZGENE
  ENSP00000431461.1 UniProtKB/Swiss-Prot
  ENSP00000432876 ENTREZGENE
  ENSP00000432876.1 UniProtKB/Swiss-Prot
  ENSP00000434392 ENTREZGENE
  ENSP00000434392.1 UniProtKB/Swiss-Prot
  ENSP00000434954.1 UniProtKB/TrEMBL
  ENSP00000436923.1 UniProtKB/Swiss-Prot
Ensembl Transcript ENST00000298523 ENTREZGENE
  ENST00000298523.9 UniProtKB/Swiss-Prot
  ENST00000304084 ENTREZGENE
  ENST00000304084.13 UniProtKB/Swiss-Prot
  ENST00000310002 ENTREZGENE
  ENST00000310002.4 UniProtKB/Swiss-Prot
  ENST00000349926.9 UniProtKB/Swiss-Prot
  ENST00000353231 ENTREZGENE
  ENST00000353231.9 UniProtKB/Swiss-Prot
  ENST00000396484 ENTREZGENE
  ENST00000396484.6 UniProtKB/Swiss-Prot
  ENST00000465100.5 UniProtKB/Swiss-Prot
  ENST00000525605.1 UniProtKB/TrEMBL
  ENST00000529761 ENTREZGENE
  ENST00000529761.5 UniProtKB/Swiss-Prot
  ENST00000531192 ENTREZGENE
  ENST00000531192.5 UniProtKB/Swiss-Prot
  ENST00000533022 ENTREZGENE
  ENST00000533022.5 UniProtKB/Swiss-Prot
Gene3D-CATH 3.10.100.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000172243 GTEx
HGNC ID HGNC:14558 ENTREZGENE
Human Proteome Map CLEC7A Human Proteome Map
InterPro C-type_lectin-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  C-type_lectin-like/link_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CLEC7A UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CTDL_fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NKR-like_CTLD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:64581 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene 64581 ENTREZGENE
OMIM 606264 OMIM
  613108 OMIM
  614079 OMIM
PANTHER C-TYPE LECTIN DOMAIN FAMILY 7 MEMBER A UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR47218 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Lectin_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA26581 PharmGKB
PROSITE C_TYPE_LECTIN_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART CLECT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF56436 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A024RAN9 ENTREZGENE, UniProtKB/TrEMBL
  A0A0S2Z5Q1 ENTREZGENE, UniProtKB/TrEMBL
  A0A2Z5YRT6 ENTREZGENE, UniProtKB/TrEMBL
  A0A2Z5YRU4 ENTREZGENE, UniProtKB/TrEMBL
  CLC7A_HUMAN UniProtKB/Swiss-Prot
  Q68D78 ENTREZGENE, UniProtKB/TrEMBL
  Q9BXN2 ENTREZGENE
  Q9H1K3 ENTREZGENE
UniProt Secondary B2R861 UniProtKB/Swiss-Prot
  B7Z494 UniProtKB/Swiss-Prot
  B7Z5A9 UniProtKB/Swiss-Prot
  B7Z5B9 UniProtKB/Swiss-Prot
  Q6IPS7 UniProtKB/Swiss-Prot
  Q96D32 UniProtKB/Swiss-Prot
  Q96DR9 UniProtKB/Swiss-Prot
  Q96LD3 UniProtKB/Swiss-Prot
  Q96PA4 UniProtKB/Swiss-Prot
  Q96PA5 UniProtKB/Swiss-Prot
  Q96PA6 UniProtKB/Swiss-Prot
  Q96PA7 UniProtKB/Swiss-Prot
  Q96PA8 UniProtKB/Swiss-Prot
  Q9H1K3 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-03-28 CLEC7A  C-type lectin domain containing 7A  CLEC7A  C-type lectin domain family 7 member A  Symbol and/or name change 5135510 APPROVED
2015-12-22 CLEC7A  C-type lectin domain family 7 member A  CLEC7A  C-type lectin domain family 7, member A  Symbol and/or name change 5135510 APPROVED