CD302 (CD302 molecule) - Rat Genome Database

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Gene: CD302 (CD302 molecule) Homo sapiens
Analyze
Symbol: CD302
Name: CD302 molecule
RGD ID: 1350388
HGNC Page HGNC:30843
Description: Predicted to enable signaling receptor activity. Acts upstream of or within phagocytosis. Located in cell cortex and filopodium.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: BIMLEC; C-type lectin BIMLEC; C-type lectin domain family 13 member A; C-type lectin domain family 13, member A; CD302 antigen; CLEC13A; DCL-1; DCL1; DEC205-associated C-type lectin 1; FLJ43091; KIAA0022; MGC22301; type I transmembrane C-type lectin receptor DCL-1
RGD Orthologs
Mouse
Rat
Bonobo
Pig
Green Monkey
Alliance Genes
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382159,768,628 - 159,798,208 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2159,768,628 - 159,798,255 (-)EnsemblGRCh38hg38GRCh38
GRCh372160,625,139 - 160,654,719 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362160,333,610 - 160,362,999 (-)NCBINCBI36Build 36hg18NCBI36
Build 342160,450,870 - 160,480,260NCBI
Celera2154,236,985 - 154,266,601 (-)NCBICelera
Cytogenetic Map2q24.2NCBI
HuRef2152,509,042 - 152,537,708 (-)NCBIHuRef
CHM1_12160,631,512 - 160,661,120 (-)NCBICHM1_1
T2T-CHM13v2.02160,225,996 - 160,255,550 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,4-dinitrotoluene  (ISO)
2,6-dinitrotoluene  (ISO)
3-chloropropane-1,2-diol  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (EXP)
4-hydroxyphenyl retinamide  (ISO)
6-propyl-2-thiouracil  (ISO)
acetamide  (ISO)
aflatoxin B1  (EXP)
aristolochic acid A  (EXP)
benzo[a]pyrene  (EXP)
benzo[a]pyrene diol epoxide I  (EXP)
bilirubin IXalpha  (EXP)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP)
butyric acid  (EXP)
cadmium atom  (EXP,ISO)
cadmium dichloride  (ISO)
carbon nanotube  (ISO)
CGP 52608  (EXP)
cisplatin  (EXP)
copper atom  (EXP,ISO)
copper(0)  (EXP,ISO)
copper(II) sulfate  (EXP)
cyclosporin A  (EXP)
dexamethasone  (EXP)
diuron  (ISO)
dorsomorphin  (EXP)
doxorubicin  (EXP)
endosulfan  (ISO)
entinostat  (EXP)
epoxiconazole  (ISO)
ethyl methanesulfonate  (EXP)
fipronil  (ISO)
flutamide  (ISO)
folic acid  (ISO)
fonofos  (EXP)
formaldehyde  (EXP)
gentamycin  (ISO)
indometacin  (EXP)
isoprenaline  (ISO)
levofloxacin  (ISO)
methapyrilene  (ISO)
methotrexate  (EXP)
methyl methanesulfonate  (EXP)
N-ethyl-N-nitrosourea  (ISO)
nefazodone  (ISO)
ozone  (EXP,ISO)
paracetamol  (EXP)
parathion  (EXP)
perfluorohexanesulfonic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phorbol 13-acetate 12-myristate  (ISO)
progesterone  (EXP)
quercetin  (EXP)
quercitrin  (EXP)
rotenone  (ISO)
SB 431542  (EXP)
silicon dioxide  (EXP,ISO)
sodium arsenite  (ISO)
tamoxifen  (ISO)
terbufos  (EXP)
thioacetamide  (ISO)
titanium dioxide  (ISO)
trichloroethene  (ISO)
trichostatin A  (EXP)
valproic acid  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
phagocytosis  (IDA)

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:7584026   PMID:7584028   PMID:8889548   PMID:12477932   PMID:12824192   PMID:15489334   PMID:15815621   PMID:16344560   PMID:17947679   PMID:18420585   PMID:19317456   PMID:19946888  
PMID:20237496   PMID:21873635   PMID:23383108   PMID:25416956   PMID:27316686   PMID:29507755   PMID:32296183   PMID:35271311   PMID:35297671   PMID:35297672  


Genomics

Comparative Map Data
CD302
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382159,768,628 - 159,798,208 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2159,768,628 - 159,798,255 (-)EnsemblGRCh38hg38GRCh38
GRCh372160,625,139 - 160,654,719 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362160,333,610 - 160,362,999 (-)NCBINCBI36Build 36hg18NCBI36
Build 342160,450,870 - 160,480,260NCBI
Celera2154,236,985 - 154,266,601 (-)NCBICelera
Cytogenetic Map2q24.2NCBI
HuRef2152,509,042 - 152,537,708 (-)NCBIHuRef
CHM1_12160,631,512 - 160,661,120 (-)NCBICHM1_1
T2T-CHM13v2.02160,225,996 - 160,255,550 (-)NCBIT2T-CHM13v2.0
Cd302
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39260,082,337 - 60,114,828 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl260,082,337 - 60,114,832 (-)EnsemblGRCm39 Ensembl
GRCm38260,251,993 - 60,284,484 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl260,251,993 - 60,284,488 (-)EnsemblGRCm38mm10GRCm38
MGSCv37260,090,050 - 60,122,475 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36260,052,832 - 60,085,257 (-)NCBIMGSCv36mm8
Celera261,947,125 - 61,978,864 (-)NCBICelera
Cytogenetic Map2C1.1NCBI
cM Map234.5NCBI
Cd302
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8365,131,017 - 65,164,737 (-)NCBIGRCr8
mRatBN7.2344,722,324 - 44,756,045 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl344,722,325 - 44,756,045 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx348,083,413 - 48,117,107 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0356,666,985 - 56,700,674 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0354,432,113 - 54,465,827 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0346,327,382 - 46,361,092 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl346,327,383 - 46,361,092 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0351,435,506 - 51,469,216 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4341,958,036 - 41,991,705 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1341,854,408 - 41,888,077 (-)NCBI
Celera342,764,963 - 42,798,643 (-)NCBICelera
Cytogenetic Map3q21NCBI
CD302
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21362,459,405 - 62,489,537 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B62,474,381 - 62,504,485 (-)NCBINHGRI_mPanPan1
CD302
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1566,696,775 - 66,732,605 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11566,701,634 - 66,732,590 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21573,935,373 - 73,968,259 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CD302
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Vero_WHO_p1.0NW_023666040154,389,025 - 154,403,504 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in CD302
6 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 2q24.1-24.3(chr2:158382388-166605758)x1 copy number loss See cases [RCV000051003] Chr2:158382388..166605758 [GRCh38]
Chr2:159238900..167462268 [GRCh37]
Chr2:158947146..167170514 [NCBI36]
Chr2:2q24.1-24.3		 pathogenic
GRCh38/hg38 2q24.1-24.3(chr2:154366788-167048902)x3 copy number gain See cases [RCV000052950] Chr2:154366788..167048902 [GRCh38]
Chr2:155223300..167905412 [GRCh37]
Chr2:154931546..167613658 [NCBI36]
Chr2:2q24.1-24.3		 pathogenic
GRCh38/hg38 2q23.1-24.3(chr2:148917286-163204623)x1 copy number loss See cases [RCV000054093] Chr2:148917286..163204623 [GRCh38]
Chr2:149674855..164061133 [GRCh37]
Chr2:149391325..163769379 [NCBI36]
Chr2:2q23.1-24.3		 pathogenic
NM_001198759.1(LY75-CD302):c.5023G>A (p.Asp1675Asn) single nucleotide variant Malignant melanoma [RCV000060363] Chr2:159783437 [GRCh38]
Chr2:160639948 [GRCh37]
Chr2:160348194 [NCBI36]
Chr2:2q24.2		 not provided
GRCh38/hg38 2q24.1-31.1(chr2:154294042-175989372)x3 copy number gain See cases [RCV000142286] Chr2:154294042..175989372 [GRCh38]
Chr2:155150555..176854100 [GRCh37]
Chr2:154858801..176562346 [NCBI36]
Chr2:2q24.1-31.1		 pathogenic
GRCh37/hg19 2q24.1-31.3(chr2:156489430-182921298)x3 copy number gain See cases [RCV000239848] Chr2:156489430..182921298 [GRCh37]
Chr2:2q24.1-31.3		 pathogenic
GRCh37/hg19 2q24.2(chr2:160652699-161149794)x3 copy number gain See cases [RCV000240413] Chr2:160652699..161149794 [GRCh37]
Chr2:2q24.2		 uncertain significance
GRCh37/hg19 2q24.2(chr2:160626842-161174440)x3 copy number gain See cases [RCV000449400] Chr2:160626842..161174440 [GRCh37]
Chr2:2q24.2		 uncertain significance
GRCh37/hg19 2p25.3-q37.3(chr2:12771-242783384) copy number gain See cases [RCV000512056] Chr2:12771..242783384 [GRCh37]
Chr2:2p25.3-q37.3		 pathogenic
GRCh37/hg19 2p25.3-q37.3(chr2:12771-242783384)x3 copy number gain See cases [RCV000511212] Chr2:12771..242783384 [GRCh37]
Chr2:2p25.3-q37.3		 pathogenic
GRCh37/hg19 2q12.1-24.3(chr2:104172062-168223828)x1 copy number loss Poly (ADP-Ribose) polymerase inhibitor response [RCV000626436] Chr2:104172062..168223828 [GRCh37]
Chr2:2q12.1-24.3		 drug response
GRCh37/hg19 2q24.1-24.3(chr2:157970774-169270675)x1 copy number loss See cases [RCV000512264] Chr2:157970774..169270675 [GRCh37]
Chr2:2q24.1-24.3		 pathogenic
Single allele deletion Autistic behavior [RCV000627115] Chr2:160075929..164666149 [GRCh37]
Chr2:2q24.2-24.3		 likely pathogenic
GRCh37/hg19 2q24.2(chr2:160626842-161174930)x3 copy number gain not provided [RCV000682083] Chr2:160626842..161174930 [GRCh37]
Chr2:2q24.2		 likely benign|uncertain significance
GRCh37/hg19 2p25.3-q37.3(chr2:14238-243048760)x3 copy number gain not provided [RCV000752802] Chr2:14238..243048760 [GRCh37]
Chr2:2p25.3-q37.3		 pathogenic
GRCh37/hg19 2p25.3-q37.3(chr2:15672-243101834)x3 copy number gain not provided [RCV000752804] Chr2:15672..243101834 [GRCh37]
Chr2:2p25.3-q37.3		 pathogenic
GRCh37/hg19 2q23.3-31.2(chr2:152409978-179325736)x3 copy number gain not provided [RCV000740654] Chr2:152409978..179325736 [GRCh37]
Chr2:2q23.3-31.2		 pathogenic
GRCh37/hg19 2q24.2-24.3(chr2:160075929-164666149) copy number loss Autistic behavior [RCV001200909] Chr2:160075929..164666149 [GRCh37]
Chr2:2q24.2-24.3		 likely pathogenic
GRCh37/hg19 2q24.1-24.2(chr2:158925958-162489191)x1 copy number loss not provided [RCV001005346] Chr2:158925958..162489191 [GRCh37]
Chr2:2q24.1-24.2		 pathogenic
GRCh37/hg19 2p25.3-q37.3(chr2:1-243199373) copy number gain Mosaic trisomy 2 [RCV002280628] Chr2:1..243199373 [GRCh37]
Chr2:2p25.3-q37.3		 pathogenic
GRCh37/hg19 2q24.1-24.3(chr2:158950827-164456735) copy number loss not specified [RCV002053256] Chr2:158950827..164456735 [GRCh37]
Chr2:2q24.1-24.3		 pathogenic
GRCh37/hg19 2q24.2(chr2:159844069-161073462) copy number loss BAZ2B-related disorder [RCV003234630] Chr2:159844069..161073462 [GRCh37]
Chr2:2q24.2		 pathogenic
GRCh37/hg19 2q24.2-31.1(chr2:160347642-174075851)x1 copy number loss 2q24 microdeletion syndrome [RCV002271993] Chr2:160347642..174075851 [GRCh37]
Chr2:2q24.2-31.1		 pathogenic
NM_014880.5(CD302):c.17T>G (p.Leu6Arg) single nucleotide variant Inborn genetic diseases [RCV002902032] Chr2:159798182 [GRCh38]
Chr2:160654693 [GRCh37]
Chr2:2q24.2		 uncertain significance
NM_014880.5(CD302):c.20C>G (p.Pro7Arg) single nucleotide variant Inborn genetic diseases [RCV002906325] Chr2:159798179 [GRCh38]
Chr2:160654690 [GRCh37]
Chr2:2q24.2		 uncertain significance
NM_014880.5(CD302):c.13G>A (p.Ala5Thr) single nucleotide variant Inborn genetic diseases [RCV003179196] Chr2:159798186 [GRCh38]
Chr2:160654697 [GRCh37]
Chr2:2q24.2		 uncertain significance
GRCh37/hg19 2q24.1-24.3(chr2:157718631-165360287)x1 copy number loss not specified [RCV003986232] Chr2:157718631..165360287 [GRCh37]
Chr2:2q24.1-24.3		 pathogenic
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1190
Count of miRNA genes:734
Interacting mature miRNAs:823
Transcripts:ENST00000259053, ENST00000429078, ENST00000480212
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
D2S156  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372160,648,913 - 160,649,000UniSTSGRCh37
GRCh372160,648,843 - 160,649,028UniSTSGRCh37
GRCh372160,648,903 - 160,649,069UniSTSGRCh37
Build 362160,357,149 - 160,357,315RGDNCBI36
Celera2154,260,748 - 154,260,835UniSTS
Celera2154,260,738 - 154,260,904RGD
Celera2154,260,678 - 154,260,863UniSTS
Cytogenetic Map2q24.2UniSTS
HuRef2152,532,740 - 152,532,927UniSTS
HuRef2152,532,810 - 152,532,899UniSTS
HuRef2152,532,800 - 152,532,968UniSTS
Marshfield Genetic Map2164.51UniSTS
Marshfield Genetic Map2164.51RGD
Genethon Genetic Map2170.5UniSTS
TNG Radiation Hybrid Map292225.0UniSTS
deCODE Assembly Map2168.06UniSTS
Stanford-G3 RH Map26562.0UniSTS
GeneMap99-GB4 RH Map2532.53UniSTS
Whitehead-RH Map2811.9UniSTS
Whitehead-YAC Contig Map2 UniSTS
GeneMap99-G3 RH Map27423.0UniSTS
SGC30020  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372160,627,348 - 160,627,497UniSTSGRCh37
Build 362160,335,594 - 160,335,743RGDNCBI36
Celera2154,239,196 - 154,239,345RGD
Cytogenetic Map2qUniSTS
Cytogenetic Map2q24.2UniSTS
HuRef2152,511,253 - 152,511,402UniSTS
GeneMap99-GB4 RH Map2538.39UniSTS
Whitehead-RH Map2809.5UniSTS
NCBI RH Map21124.7UniSTS
D2S2971  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372160,626,067 - 160,626,194UniSTSGRCh37
Build 362160,334,313 - 160,334,440RGDNCBI36
Celera2154,237,913 - 154,238,042RGD
Cytogenetic Map2qUniSTS
Cytogenetic Map2q24.2UniSTS
HuRef2152,509,970 - 152,510,099UniSTS
RH25260  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372160,625,593 - 160,625,793UniSTSGRCh37
Build 362160,333,839 - 160,334,039RGDNCBI36
Celera2154,237,439 - 154,237,639RGD
Cytogenetic Map2qUniSTS
Cytogenetic Map2q24.2UniSTS
HuRef2152,509,496 - 152,509,696UniSTS
GeneMap99-GB4 RH Map2529.49UniSTS
NCBI RH Map21124.7UniSTS
RH70502  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372160,625,222 - 160,625,377UniSTSGRCh37
Build 362160,333,468 - 160,333,623RGDNCBI36
Celera2154,237,068 - 154,237,223RGD
Cytogenetic Map2qUniSTS
Cytogenetic Map2q24.2UniSTS
HuRef2152,509,125 - 152,509,280UniSTS
GeneMap99-GB4 RH Map2529.49UniSTS
A007L02  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372160,625,397 - 160,625,561UniSTSGRCh37
Build 362160,333,643 - 160,333,807RGDNCBI36
Celera2154,237,243 - 154,237,407RGD
Cytogenetic Map2qUniSTS
Cytogenetic Map2q24.2UniSTS
HuRef2152,509,300 - 152,509,464UniSTS
GeneMap99-GB4 RH Map2527.62UniSTS
D8S2279  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map21q22.12UniSTS
Cytogenetic Map15q13UniSTS
Cytogenetic Map9q32UniSTS
Cytogenetic Map15q22.3UniSTS
Cytogenetic Map17p12UniSTS
Cytogenetic Map21q21.3UniSTS
Cytogenetic Map3p22-p21.3UniSTS
Cytogenetic Map1q21.1UniSTS
Cytogenetic Map2q24.2UniSTS
Cytogenetic Map17q24.2UniSTS
Cytogenetic Map1q32UniSTS
Cytogenetic Map3p25.3UniSTS
Cytogenetic Map20q13.3UniSTS
Cytogenetic Map2q31.1UniSTS
Cytogenetic Map1q21UniSTS
Cytogenetic Map3p14.1UniSTS
Cytogenetic Map2q37.3UniSTS
Cytogenetic Map7p14.1UniSTS
Cytogenetic Map2q22.3UniSTS
Cytogenetic Map15q13.2UniSTS
Cytogenetic Map12q24.1UniSTS
Cytogenetic Map7p15.2UniSTS
Cytogenetic Map5q31.2UniSTS
Cytogenetic Map2p25.2UniSTS
Cytogenetic Map3p24.3UniSTS
Cytogenetic Map17q25.3UniSTS
Cytogenetic Map15q22.31UniSTS
Cytogenetic Map5q14UniSTS
Cytogenetic Map5q31UniSTS
Cytogenetic Map1p36.32UniSTS
Cytogenetic Map1q42.12UniSTS
Cytogenetic Map7q21.11UniSTS
Cytogenetic Map9q34.2UniSTS
Cytogenetic Map19q13.3UniSTS
Cytogenetic Map22q13.33UniSTS
Cytogenetic Map8q22.3UniSTS
Cytogenetic Map6p21.1-p12UniSTS
Cytogenetic Map1p36.13UniSTS
Cytogenetic Map7q36.3UniSTS
Cytogenetic Map2p25.1UniSTS
Cytogenetic Map7p21.3UniSTS
Cytogenetic Map4q12UniSTS
Cytogenetic Map22q11.22UniSTS
Cytogenetic Map11p13UniSTS
Cytogenetic Map1q12UniSTS
Cytogenetic Map8p23UniSTS
Cytogenetic Map11q13.2-q13.3UniSTS
Cytogenetic Map13q14.1-q14.3UniSTS
Cytogenetic Map3q22-q24UniSTS
Cytogenetic Map3q13.1-q13.2UniSTS
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Cytogenetic Map7q31.3UniSTS
Cytogenetic Map20q13.2-q13.3UniSTS
Cytogenetic Map1p21.2UniSTS
Cytogenetic Map9q21.33UniSTS
Cytogenetic Map14q32.2UniSTS
Cytogenetic Map13q13.3UniSTS
Cytogenetic Map10p12.31UniSTS
Cytogenetic Map22q11.1UniSTS
Cytogenetic Map5q33.2UniSTS
Cytogenetic Map13q32.2UniSTS
Cytogenetic Map14q23.1UniSTS
Cytogenetic Map8q21.2UniSTS
Cytogenetic Map2q24.1UniSTS
Cytogenetic Map10q26.13UniSTS
Cytogenetic Map2q23.3UniSTS
Cytogenetic Map19p13.1UniSTS
Cytogenetic Map15q14-q15UniSTS
Cytogenetic Map1q42.13UniSTS
Cytogenetic Map14q31UniSTS
Cytogenetic Map7p21.1UniSTS
Cytogenetic Map8p12-p11UniSTS
Cytogenetic Map18p11.2UniSTS
Cytogenetic Map7p11.1UniSTS
Cytogenetic Map1q31-q32UniSTS
Cytogenetic Map2q12UniSTS
Cytogenetic Map3p21.32UniSTS
Cytogenetic Map2p24.2UniSTS
Cytogenetic Map2q33-q34UniSTS
Cytogenetic Map6q24.1UniSTS
Cytogenetic Map4q22.1UniSTS
Cytogenetic Map15q13.3UniSTS
Cytogenetic Map10q26.11UniSTS
Cytogenetic Map7p15.3UniSTS
Cytogenetic Map10q23.33UniSTS
Cytogenetic Map12p12.1UniSTS
Cytogenetic Map7p13-p12UniSTS
Cytogenetic MapXq25UniSTS
Cytogenetic Map17q11-q21UniSTS
Cytogenetic Map12q23UniSTS
Cytogenetic Map6p24-p22.3UniSTS
Cytogenetic Map14q23.2UniSTS
Cytogenetic Map7q31.1-q31.2UniSTS
Cytogenetic Map8q22.2UniSTS
Cytogenetic Map15q21.2UniSTS
Cytogenetic Map3p26.1-p25.1UniSTS
Cytogenetic Map5q35UniSTS
Cytogenetic Map3q13.2UniSTS
Cytogenetic Map4p15.2UniSTS
Cytogenetic Map6q16.3UniSTS
Cytogenetic Map17q24-q25UniSTS
Cytogenetic MapXq12UniSTS
Cytogenetic MapXq27.1UniSTS
Cytogenetic Map8q12.3UniSTS
Cytogenetic Map5q21.2UniSTS
Cytogenetic Map5q15UniSTS
Cytogenetic Map5q35.1UniSTS
Cytogenetic Map4q13.3UniSTS
Cytogenetic Map4q35.2UniSTS
Cytogenetic Map3p26.1UniSTS
Cytogenetic Map3p11.1UniSTS
Cytogenetic Map17q21.2UniSTS
Cytogenetic Map2q21.2UniSTS
Cytogenetic Map19p13.13UniSTS
Cytogenetic Map18q12.3UniSTS
Cytogenetic Map18p11.3UniSTS
Cytogenetic Map17q11.1UniSTS
Cytogenetic Map15q25.1UniSTS
Cytogenetic Map13q12.3UniSTS
Cytogenetic Map12q23.2UniSTS
Cytogenetic Map12q12-q13UniSTS
Cytogenetic Map12q14UniSTS
Cytogenetic Map5q33.1UniSTS
Cytogenetic Map2q32-q34UniSTS
Cytogenetic Map16q22.3UniSTS
Cytogenetic Map2p15-p13UniSTS
Cytogenetic MapXp11.4UniSTS
Cytogenetic Map19q13.33-q13.41UniSTS
Cytogenetic Map20p11UniSTS
Cytogenetic Map6q23-q24UniSTS
Cytogenetic Map2p12UniSTS
Cytogenetic Map2p13UniSTS
Cytogenetic Map13q11-q12UniSTS
Cytogenetic Map6p12.3-p11.2UniSTS
Cytogenetic Map6q16.1-q16.3UniSTS
Cytogenetic Map22q11UniSTS
Cytogenetic Map7q31.2UniSTS
Cytogenetic Map10q21.3UniSTS
Cytogenetic Map3q25.2UniSTS
Cytogenetic Map3p21.1-p14.3UniSTS
Cytogenetic Map6p12.1UniSTS
Cytogenetic Map3q23-q24UniSTS
Cytogenetic Map3q12UniSTS
Cytogenetic Map7q11.1UniSTS
Cytogenetic Map3q22.3UniSTS
Cytogenetic Map7q21.3UniSTS
Cytogenetic Map4q31.1UniSTS
Cytogenetic Map22q12-q13UniSTS
Cytogenetic Map4q23UniSTS
Cytogenetic MapXp22.12UniSTS
Cytogenetic Map6q16.1UniSTS
Cytogenetic Map13q14.13UniSTS
Cytogenetic Map18q21.3UniSTS
Cytogenetic Map9q33.2UniSTS
Cytogenetic Map11q21UniSTS
Cytogenetic Map8q12UniSTS
Cytogenetic Map4q28-q32UniSTS
Cytogenetic Map17q24.3UniSTS
Cytogenetic Map6p23UniSTS
Cytogenetic Map8p11UniSTS
Cytogenetic Map5q34UniSTS
Cytogenetic Map1q24.3UniSTS
Cytogenetic Map9q33.1UniSTS
Cytogenetic Map1q23.3UniSTS
Cytogenetic Map2p16.2UniSTS
Cytogenetic Map9q22.31UniSTS
Cytogenetic Map9p24.3UniSTS
Cytogenetic Map7q35UniSTS
Cytogenetic Map1p36.2UniSTS
Cytogenetic Map11q22.3UniSTS
Cytogenetic Map16p12UniSTS
Cytogenetic Map1q22-q23UniSTS
Cytogenetic Map13q22.1UniSTS
Cytogenetic Map2q12.2UniSTS
Cytogenetic Map8p12UniSTS
Cytogenetic Map4q21UniSTS
Cytogenetic Map13q12.2UniSTS
Cytogenetic Map9q31-q33UniSTS
Cytogenetic Map6p24.1UniSTS
Cytogenetic Map1q23UniSTS
Cytogenetic Map11q12-q13UniSTS
Cytogenetic Map11q13.3UniSTS
Cytogenetic Map11q24.2UniSTS
Cytogenetic Map11q12.1UniSTS
Cytogenetic Map3p26UniSTS
Cytogenetic Map5q13UniSTS
Cytogenetic Map8p21UniSTS
Cytogenetic Map19q13.1-q13.2UniSTS
Cytogenetic Map1p33-p32UniSTS
Cytogenetic Map7q36.2UniSTS
Cytogenetic Map4q32.3UniSTS
Cytogenetic Map16p13.2UniSTS
Cytogenetic Map14q32UniSTS
Cytogenetic Map10q11.23UniSTS
Cytogenetic Map10q26.1UniSTS
Cytogenetic Map9q32-q33.3UniSTS
Cytogenetic Map9q22.1-q22.2UniSTS
Cytogenetic Map3q26.1-q26.2UniSTS
Cytogenetic Map5q31-q34UniSTS
Cytogenetic Map9q33-q34UniSTS
Cytogenetic Map5q11.2-q13.2UniSTS
Cytogenetic Map13q32UniSTS
Cytogenetic Map9q22.32UniSTS
Cytogenetic Map1p36.3UniSTS
Cytogenetic Map1p36.3-p36.2UniSTS
Cytogenetic Map4q28.1UniSTS
Cytogenetic Map5q22UniSTS
Cytogenetic Map12p11.21UniSTS
Cytogenetic MapXq13.3UniSTS
Cytogenetic Map9q31.3UniSTS
Cytogenetic Map3p26.3UniSTS
Cytogenetic Map2q11.1UniSTS
Cytogenetic Map21q11.2UniSTS
Cytogenetic Map18q21.32UniSTS
Cytogenetic Map15q26.2UniSTS
Cytogenetic Map12q24.23UniSTS
Cytogenetic Map10q25.3UniSTS
Cytogenetic Map20q11.23UniSTS
Cytogenetic Map20p12.1UniSTS
Cytogenetic Map2q31.1-q31.2UniSTS
Cytogenetic MapXp22.31UniSTS
Cytogenetic MapXp21.3UniSTS
Cytogenetic Map5q33.3UniSTS
Cytogenetic Map4q28.2UniSTS
Cytogenetic Map3p14.2UniSTS
Cytogenetic Map3q24UniSTS
Cytogenetic Map2q13UniSTS
Cytogenetic Map20q13.2UniSTS
Cytogenetic Map14q11.2-q12UniSTS
Cytogenetic Map3p24UniSTS
Cytogenetic Map12q23.3UniSTS
Cytogenetic Map11q24.3UniSTS
Cytogenetic Map11q14.3UniSTS
Cytogenetic Map10q25.2UniSTS
Cytogenetic Map3q25.1UniSTS
Cytogenetic Map8q13UniSTS
Cytogenetic Map1p22.2UniSTS
Cytogenetic Map3p22.3UniSTS
Cytogenetic Map18q11.1UniSTS
Cytogenetic Map8q23.3UniSTS
Cytogenetic Map15q24UniSTS
Cytogenetic Map11cen-q12UniSTS
Cytogenetic Map11q25UniSTS
Cytogenetic Map3p22.2UniSTS
Cytogenetic MapXp21.1UniSTS
Cytogenetic Map7q36UniSTS
Cytogenetic Map7p14.3UniSTS
Cytogenetic Map12q21UniSTS
Cytogenetic Map7p15UniSTS
Cytogenetic Map7q22-q31UniSTS
Cytogenetic Map11q22UniSTS
Cytogenetic Map5p15.3UniSTS
Cytogenetic Map20q13.3-qterUniSTS
Cytogenetic Map1p35-p34UniSTS
Cytogenetic Map4p13-p12UniSTS
Cytogenetic Map10q21-q22UniSTS
Cytogenetic Map4q22UniSTS
Cytogenetic Map7p13-p11.1UniSTS
Cytogenetic Map9q31-q34UniSTS
Cytogenetic Map7q21.1-q22UniSTS
Cytogenetic Map15q26.1UniSTS
Cytogenetic Map3q13.13-q13.2UniSTS
Cytogenetic MapXp22.13UniSTS
Cytogenetic Map13q12.12UniSTS
Cytogenetic Map13q14.2UniSTS
Cytogenetic Map12qUniSTS
Cytogenetic Map1pUniSTS
Cytogenetic Map16pUniSTS
Cytogenetic Map15qUniSTS
Cytogenetic Map7qUniSTS
Cytogenetic Map2qUniSTS
Cytogenetic Map5q13.1UniSTS
Cytogenetic Map11p14.1UniSTS
Cytogenetic Map4q32UniSTS
Cytogenetic Map2p22UniSTS
Cytogenetic Map5q14.3UniSTS
Cytogenetic Map10p12.1UniSTS
Cytogenetic Map5q23.2UniSTS
Cytogenetic Map2p24.1UniSTS
Cytogenetic Map8q24.13UniSTS
Cytogenetic Map12p13.32UniSTS
Cytogenetic Map9p21.1UniSTS
Cytogenetic Map9q34.2-q34.3UniSTS
D2S156  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map2q24.2UniSTS
D2S156  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map2q24.2UniSTS
TNG Radiation Hybrid Map292225.0UniSTS
Stanford-G3 RH Map26562.0UniSTS
GeneMap99-GB4 RH Map2532.53UniSTS
GeneMap99-G3 RH Map27423.0UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High
Medium 1803 2155 1291 510 1002 379 2553 818 787 80 1102 1315 134 1 1203 1675 1 1
Low 599 831 433 114 883 84 1769 1366 2934 300 321 250 37 1 1112 4 1
Below cutoff 26 5 56 2 32 12 13 34 35 38 3 1 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000259053   ⟹   ENSP00000259053
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2159,768,628 - 159,798,208 (-)Ensembl
RefSeq Acc Id: ENST00000429078   ⟹   ENSP00000394301
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2159,768,630 - 159,798,255 (-)Ensembl
RefSeq Acc Id: ENST00000480212
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2159,768,853 - 159,798,242 (-)Ensembl
RefSeq Acc Id: ENST00000553424   ⟹   ENSP00000451446
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2159,768,630 - 159,798,255 (-)Ensembl
RefSeq Acc Id: NM_001198763   ⟹   NP_001185692
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382159,768,628 - 159,798,208 (-)NCBI
GRCh372160,625,139 - 160,655,115 (-)NCBI
HuRef2152,509,042 - 152,537,708 (-)RGD
CHM1_12160,631,512 - 160,661,120 (-)NCBI
T2T-CHM13v2.02160,225,996 - 160,255,550 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001198764   ⟹   NP_001185693
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382159,768,628 - 159,798,208 (-)NCBI
GRCh372160,625,139 - 160,655,115 (-)NCBI
HuRef2152,509,042 - 152,537,708 (-)RGD
CHM1_12160,631,512 - 160,661,120 (-)NCBI
T2T-CHM13v2.02160,225,996 - 160,255,550 (-)NCBI
Sequence:
RefSeq Acc Id: NM_014880   ⟹   NP_055695
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382159,768,628 - 159,798,208 (-)NCBI
GRCh372160,625,139 - 160,655,115 (-)NCBI
Build 362160,333,610 - 160,362,999 (-)NCBI Archive
Celera2154,236,985 - 154,266,601 (-)RGD
HuRef2152,509,042 - 152,537,708 (-)RGD
CHM1_12160,631,512 - 160,661,120 (-)NCBI
T2T-CHM13v2.02160,225,996 - 160,255,550 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_055695   ⟸   NM_014880
- Peptide Label: isoform 1 precursor
- UniProtKB: B4E2T9 (UniProtKB/Swiss-Prot),   A8K5G4 (UniProtKB/Swiss-Prot),   Q15009 (UniProtKB/Swiss-Prot),   Q8IX05 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001185693   ⟸   NM_001198764
- Peptide Label: isoform 3 precursor
- UniProtKB: A0A087WT00 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001185692   ⟸   NM_001198763
- Peptide Label: isoform 2 precursor
- UniProtKB: Q8IX05 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSP00000394301   ⟸   ENST00000429078
RefSeq Acc Id: ENSP00000259053   ⟸   ENST00000259053
RefSeq Acc Id: ENSP00000451446   ⟸   ENST00000553424
Protein Domains
C-type lectin

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8IX05-F1-model_v2 AlphaFold Q8IX05 1-232 view protein structure

Promoters
RGD ID:6861838
Promoter ID:EPDNEW_H4083
Type:initiation region
Name:CD302_1
Description:CD302 molecule
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh382159,798,208 - 159,798,268EPDNEW
RGD ID:6796963
Promoter ID:HG_KWN:35584
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   K562,   Lymphoblastoid,   NB4
Transcripts:NM_014880,   OTTHUMT00000333761
Position:
Human AssemblyChrPosition (strand)Source
Build 362160,362,666 - 160,363,217 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:30843 AgrOrtholog
COSMIC CD302 COSMIC
Ensembl Genes ENSG00000241399 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000259053 ENTREZGENE
  ENST00000259053.6 UniProtKB/Swiss-Prot
  ENST00000429078 ENTREZGENE
  ENST00000429078.6 UniProtKB/Swiss-Prot
  ENST00000553424 ENTREZGENE
  ENST00000553424.5 UniProtKB/TrEMBL
Gene3D-CATH 3.10.100.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000241399 GTEx
HGNC ID HGNC:30843 ENTREZGENE
Human Proteome Map CD302 Human Proteome Map
InterPro C-type_lectin-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  C-type_lectin-like/link_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CTDL_fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:9936 UniProtKB/Swiss-Prot
NCBI Gene 9936 ENTREZGENE
OMIM 612246 OMIM
PANTHER CD302 ANTIGEN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Lectin_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA142672141 PharmGKB
PROSITE C_TYPE_LECTIN_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART CLECT UniProtKB/Swiss-Prot
Superfamily-SCOP SSF56436 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A087WT00 ENTREZGENE, UniProtKB/TrEMBL
  A8K5G4 ENTREZGENE
  B4E2T9 ENTREZGENE
  CD302_HUMAN UniProtKB/Swiss-Prot
  Q15009 ENTREZGENE
  Q8IX05 ENTREZGENE
UniProt Secondary A8K5G4 UniProtKB/Swiss-Prot
  B4E2T9 UniProtKB/Swiss-Prot
  Q15009 UniProtKB/Swiss-Prot