IGHV3OR15-7 (immunoglobulin heavy variable 3/OR15-7 (pseudogene)) - Rat Genome Database

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Gene: IGHV3OR15-7 (immunoglobulin heavy variable 3/OR15-7 (pseudogene)) Homo sapiens
Analyze
No known orthologs.
Symbol: IGHV3OR15-7
Name: immunoglobulin heavy variable 3/OR15-7 (pseudogene)
RGD ID: 1350117
HGNC Page HGNC:5633
Description: Predicted to enable antigen binding activity. Predicted to be involved in immunoglobulin mediated immune response. Predicted to be located in extracellular region and plasma membrane. Predicted to be part of immunoglobulin complex.
Type: pseudo (Ensembl: IG_V_gene)
Previously known as: IGHV3/OR15-7; IGHV3OR157
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
NCBI Annotation Information: Genome Annotation Status: not in current annotation release
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl1519,987,656 - 19,988,117 (-)EnsemblGRCh38hg38GRCh38
GRCh371520,192,722 - 20,193,418 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map15q11.1NCBI
HuRef15207,310 - 210,014 (-)NCBIHuRef
CHM1_11520,193,099 - 20,193,808 (-)NCBICHM1_1


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function
antigen binding  (IBA,IEA)

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:7951227   PMID:21145461  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:421
Count of miRNA genes:378
Interacting mature miRNAs:414
Transcripts:ENST00000558565
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium 3 15 1 3
Low 320 47 50 107 378 9 5 1 11 51 133 98 8 3
Below cutoff 374 334 171 94 361 57 169 57 99 36 275 325 38 107 86

Sequence

Nucleotide Sequences
GenBank Nucleotide Z29597 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENST00000558565   ⟹   ENSP00000474509
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1519,987,656 - 19,988,117 (-)Ensembl
Protein Sequences
GenBank Protein CAA82714 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSP00000474509.1
RefSeq Acc Id: ENSP00000474509   ⟸   ENST00000558565
Protein Domains
Ig-like

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A075B7D8-F1-model_v2 AlphaFold A0A075B7D8 1-119 view protein structure


Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:5633 AgrOrtholog
COSMIC IGHV3OR15-7 COSMIC
Ensembl Genes ENSG00000259490 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENST00000558565.2 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
GTEx ENSG00000259490 GTEx
HGNC ID HGNC:5633 ENTREZGENE
Human Proteome Map IGHV3OR15-7 Human Proteome Map
InterPro Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_V-set UniProtKB/TrEMBL
NCBI Gene 28318 ENTREZGENE
PANTHER IG-LIKE DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
  IMMUNOGLOBULIN HEAVY CHAIN UniProtKB/TrEMBL
Pfam V-set UniProtKB/TrEMBL
PharmGKB PA35230 PharmGKB
PROSITE IG_LIKE UniProtKB/TrEMBL
SMART IGv UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
UniProt A0A075B7D8_HUMAN UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-27 IGHV3OR15-7  immunoglobulin heavy variable 3/OR15-7 (pseudogene)  IGHV3OR15-7  immunoglobulin heavy variable 3/OR15-7 pseudogene  Symbol and/or name change 5135510 APPROVED