AKR1B1P4 (aldo-keto reductase family 1 member B1 pseudogene 4) - Rat Genome Database

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Gene: AKR1B1P4 (aldo-keto reductase family 1 member B1 pseudogene 4) Homo sapiens
Analyze
Symbol: AKR1B1P4
Name: aldo-keto reductase family 1 member B1 pseudogene 4
RGD ID: 1349917
HGNC Page HGNC:423
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: aldo-keto reductase family 1, member B1 pseudogene 4; ALDRL4
Related Functional Gene: AKR1B1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381345,687,183 - 45,688,510 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1345,687,548 - 45,688,469 (-)EnsemblGRCh38hg38GRCh38
GRCh371346,261,318 - 46,262,645 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361345,159,720 - 45,160,607 (-)NCBINCBI36Build 36hg18NCBI36
Celera1327,316,188 - 27,317,297 (-)NCBICelera
Cytogenetic Map13q14.13NCBI
HuRef1327,058,006 - 27,059,322 (-)NCBIHuRef
CHM1_11346,230,233 - 46,231,551 (-)NCBICHM1_1
T2T-CHM13v2.01344,908,486 - 44,909,813 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:8244370  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:139
Count of miRNA genes:134
Interacting mature miRNAs:139
Transcripts:ENST00000426552
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 1 94 6 2 2
Below cutoff 159 266 150 30 212 14 333 174 174 77 247 102 16 82 264

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000426552
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1345,687,548 - 45,688,469 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AKR1B1P4 COSMIC
Ensembl Genes ENSG00000237876 Ensembl
GTEx ENSG00000237876 GTEx
HGNC ID HGNC:423 ENTREZGENE
Human Proteome Map AKR1B1P4 Human Proteome Map
NCBI Gene 390402 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-06-07 AKR1B1P4  aldo-keto reductase family 1 member B1 pseudogene 4    aldo-keto reductase family 1, member B1 pseudogene 4  Symbol and/or name change 5135510 APPROVED