GNPDA1 (glucosamine-6-phosphate deaminase 1) - Rat Genome Database

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Gene: GNPDA1 (glucosamine-6-phosphate deaminase 1) Homo sapiens
Analyze
Symbol: GNPDA1
Name: glucosamine-6-phosphate deaminase 1
RGD ID: 1349274
HGNC Page HGNC:4417
Description: Enables glucosamine-6-phosphate deaminase activity. Involved in UDP-N-acetylglucosamine biosynthetic process; generation of precursor metabolites and energy; and glucosamine catabolic process. Located in extracellular exosome.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: glcN6P deaminase 1; glucosamine-6-phosphate isomerase 1; GNP1; GNPDA; GNPDA 1; GNPI; GPI; HLN; KIAA0060; oscillin
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385142,000,671 - 142,013,027 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5141,991,749 - 142,013,041 (-)EnsemblGRCh38hg38GRCh38
GRCh375141,380,236 - 141,392,592 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 365141,360,420 - 141,372,776 (-)NCBINCBI36Build 36hg18NCBI36
Build 345141,360,423 - 141,372,776NCBI
Celera5137,461,013 - 137,473,392 (-)NCBICelera
Cytogenetic Map5q31.3NCBI
HuRef5136,526,752 - 136,539,141 (-)NCBIHuRef
CHM1_15140,813,651 - 140,826,030 (-)NCBICHM1_1
T2T-CHM13v2.05142,530,868 - 142,543,257 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1,2-dichloroethane  (ISO)
1-naphthyl isothiocyanate  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (ISO)
3-chloropropane-1,2-diol  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (EXP)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (ISO)
acetamide  (ISO)
acrylamide  (ISO)
aflatoxin B1  (EXP,ISO)
antimycin A  (EXP)
arachidonic acid  (EXP)
aristolochic acid A  (EXP)
arsane  (EXP)
arsenic atom  (EXP)
arsenite(3-)  (EXP)
benzo[a]pyrene  (EXP)
beta-naphthoflavone  (ISO)
bis(2-chloroethyl) sulfide  (EXP)
bisphenol A  (EXP,ISO)
Bisphenol B  (EXP)
bisphenol F  (EXP)
cadmium atom  (EXP)
cadmium dichloride  (EXP)
captan  (ISO)
carbon nanotube  (ISO)
chloropicrin  (EXP)
chromium(6+)  (ISO)
cisplatin  (EXP)
clofibrate  (ISO)
crocidolite asbestos  (EXP)
cyclosporin A  (EXP)
deguelin  (EXP)
dexamethasone  (EXP)
dibutyl phthalate  (ISO)
diuron  (EXP)
endosulfan  (ISO)
ethanol  (ISO)
ethyl methanesulfonate  (EXP)
gentamycin  (ISO)
indometacin  (EXP)
inulin  (ISO)
ivermectin  (EXP)
methyl methanesulfonate  (EXP)
N-nitrosodimethylamine  (ISO)
nickel atom  (EXP)
paracetamol  (EXP)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (EXP)
phenobarbital  (ISO)
pirinixic acid  (ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
resveratrol  (EXP)
Salinomycin  (EXP)
silicon dioxide  (EXP)
sodium arsenate  (EXP,ISO)
sodium arsenite  (ISO)
sulforaphane  (EXP)
sunitinib  (EXP)
temozolomide  (EXP)
thioacetamide  (ISO)
triacsin C  (EXP)
trimellitic anhydride  (ISO)
urethane  (EXP)
valproic acid  (EXP)
vinclozolin  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IBA,IEA,ISS)
cytosol  (TAS)
extracellular exosome  (HDA)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
2. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
3. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Transcriptomic characteristics of bronchoalveolar lavage fluid and peripheral blood mononuclear cells in COVID-19 patients. Xiong Y, etal., Emerg Microbes Infect. 2020 Dec;9(1):761-770. doi: 10.1080/22221751.2020.1747363.
Additional References at PubMed
PMID:7577655   PMID:7584044   PMID:8747459   PMID:9438414   PMID:9714720   PMID:10964516   PMID:12477932   PMID:12616532   PMID:12965206   PMID:14702039   PMID:15372022   PMID:15489334  
PMID:16189514   PMID:16344560   PMID:17207965   PMID:18029348   PMID:19056867   PMID:19199708   PMID:21807125   PMID:21873635   PMID:22658674   PMID:22863883   PMID:23376485   PMID:25281560  
PMID:25416956   PMID:25640309   PMID:26186194   PMID:26344197   PMID:26887390   PMID:28514442   PMID:31046837   PMID:31091453   PMID:31932471   PMID:31950832   PMID:33660365   PMID:33762435  
PMID:33961781   PMID:35032548   PMID:35271311   PMID:35545034   PMID:35831314   PMID:35944360   PMID:36114006   PMID:36215168   PMID:36634849   PMID:37827155  


Genomics

Comparative Map Data
GNPDA1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385142,000,671 - 142,013,027 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5141,991,749 - 142,013,041 (-)EnsemblGRCh38hg38GRCh38
GRCh375141,380,236 - 141,392,592 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 365141,360,420 - 141,372,776 (-)NCBINCBI36Build 36hg18NCBI36
Build 345141,360,423 - 141,372,776NCBI
Celera5137,461,013 - 137,473,392 (-)NCBICelera
Cytogenetic Map5q31.3NCBI
HuRef5136,526,752 - 136,539,141 (-)NCBIHuRef
CHM1_15140,813,651 - 140,826,030 (-)NCBICHM1_1
T2T-CHM13v2.05142,530,868 - 142,543,257 (-)NCBIT2T-CHM13v2.0
Gnpda1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391838,460,588 - 38,472,052 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1838,460,588 - 38,472,056 (-)EnsemblGRCm39 Ensembl
GRCm381838,327,537 - 38,338,993 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1838,327,535 - 38,339,003 (-)EnsemblGRCm38mm10GRCm38
MGSCv371838,487,191 - 38,498,647 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361838,453,529 - 38,464,925 (-)NCBIMGSCv36mm8
Celera1839,671,431 - 39,682,887 (-)NCBICelera
Cytogenetic Map18B3NCBI
cM Map1820.23NCBI
Gnpda1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81830,416,599 - 30,428,630 (-)NCBIGRCr8
mRatBN7.21830,165,435 - 30,177,462 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1830,165,427 - 30,177,486 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1830,269,707 - 30,281,728 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01831,032,289 - 31,044,293 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01830,367,589 - 30,379,593 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01831,479,117 - 31,489,154 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1831,479,117 - 31,487,671 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01831,157,709 - 31,167,746 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1829,806,166 - 29,818,087 (-)NCBICelera
Cytogenetic Map18p11NCBI
Gnpda1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541511,770,063 - 11,784,188 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541511,770,111 - 11,783,430 (+)NCBIChiLan1.0ChiLan1.0
GNPDA1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24137,250,439 - 137,262,938 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15135,389,988 - 135,402,490 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05137,362,575 - 137,375,079 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15143,472,844 - 143,484,863 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5143,464,056 - 143,484,857 (-)Ensemblpanpan1.1panPan2
GNPDA1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1236,938,682 - 36,949,657 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl236,939,750 - 36,948,966 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha233,991,312 - 34,002,522 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0237,393,556 - 37,404,762 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl237,393,566 - 37,404,726 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1234,468,445 - 34,479,655 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0235,279,307 - 35,290,505 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0236,086,854 - 36,098,064 (-)NCBIUU_Cfam_GSD_1.0
Gnpda1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213150,607,531 - 150,618,620 (+)NCBIHiC_Itri_2
SpeTri2.0NW_00493650412,181,544 - 12,192,596 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GNPDA1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2143,604,362 - 143,615,990 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12143,604,362 - 143,616,037 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22149,805,866 - 149,817,544 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GNPDA1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12344,634,451 - 44,646,939 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2344,632,663 - 44,646,777 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603433,203,729 - 33,216,261 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gnpda1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247741,222,458 - 1,235,842 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247741,222,451 - 1,235,897 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in GNPDA1
6 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 5q23.3-33.2(chr5:130860928-155321811)x3 copy number gain See cases [RCV000051193] Chr5:130860928..155321811 [GRCh38]
Chr5:130196621..154701371 [GRCh37]
Chr5:130224520..154681564 [NCBI36]
Chr5:5q23.3-33.2
pathogenic
GRCh38/hg38 5q31.2-32(chr5:138871137-145812309)x1 copy number loss See cases [RCV000052142] Chr5:138871137..145812309 [GRCh38]
Chr5:138206826..145191872 [GRCh37]
Chr5:138234725..145172065 [NCBI36]
Chr5:5q31.2-32
pathogenic
GRCh38/hg38 5q31.3(chr5:141757107-142141250)x1 copy number loss See cases [RCV000052143] Chr5:141757107..142141250 [GRCh38]
Chr5:141136674..141520815 [GRCh37]
Chr5:141116858..141500999 [NCBI36]
Chr5:5q31.3
pathogenic
GRCh38/hg38 5q21.3-33.2(chr5:106619588-156124387)x1 copy number loss See cases [RCV000053524] Chr5:106619588..156124387 [GRCh38]
Chr5:105955289..155551397 [GRCh37]
Chr5:105983188..155483975 [NCBI36]
Chr5:5q21.3-33.2
pathogenic
GRCh38/hg38 5q31.3(chr5:140963199-142322798)x1 copy number loss See cases [RCV000136949] Chr5:140963199..142322798 [GRCh38]
Chr5:140453735..141702363 [GRCh37]
Chr5:140322968..141682547 [NCBI36]
Chr5:5q31.3
uncertain significance
GRCh38/hg38 5q23.3-33.2(chr5:129847794-153353546)x3 copy number gain See cases [RCV000138808] Chr5:129847794..153353546 [GRCh38]
Chr5:129183487..152733106 [GRCh37]
Chr5:129211386..152713299 [NCBI36]
Chr5:5q23.3-33.2
pathogenic
GRCh38/hg38 5q31.3-32(chr5:141089988-149530678)x3 copy number gain See cases [RCV000139504] Chr5:141089988..149530678 [GRCh38]
Chr5:140469572..148910241 [GRCh37]
Chr5:140449756..148890434 [NCBI36]
Chr5:5q31.3-32
pathogenic
GRCh38/hg38 5q31.2-31.3(chr5:138942857-144605017)x3 copy number gain See cases [RCV000142806] Chr5:138942857..144605017 [GRCh38]
Chr5:138278546..143984580 [GRCh37]
Chr5:138306445..143964773 [NCBI36]
Chr5:5q31.2-31.3
uncertain significance
GRCh37/hg19 5q15-35.3(chr5:94844077-178830410)x3 copy number gain not provided [RCV000487658] Chr5:94844077..178830410 [GRCh37]
Chr5:5q15-35.3
likely benign
GRCh37/hg19 5q23.3-33.3(chr5:130125085-157574910)x3 copy number gain See cases [RCV000449349] Chr5:130125085..157574910 [GRCh37]
Chr5:5q23.3-33.3
pathogenic
GRCh37/hg19 5p15.33-q35.3(chr5:113577-180719789) copy number gain See cases [RCV000510723] Chr5:113577..180719789 [GRCh37]
Chr5:5p15.33-q35.3
pathogenic
GRCh37/hg19 5q21.3-35.3(chr5:106716357-180687338)x3 copy number gain See cases [RCV000448245] Chr5:106716357..180687338 [GRCh37]
Chr5:5q21.3-35.3
pathogenic
GRCh37/hg19 5q31.3-32(chr5:141113273-149154835)x1 copy number loss See cases [RCV000510497] Chr5:141113273..149154835 [GRCh37]
Chr5:5q31.3-32
pathogenic
GRCh37/hg19 5p15.1-q35.2(chr5:17628741-176575720)x1 copy number loss See cases [RCV000511978] Chr5:17628741..176575720 [GRCh37]
Chr5:5p15.1-q35.2
pathogenic
GRCh37/hg19 5p15.33-q35.3(chr5:113577-180719789)x3 copy number gain See cases [RCV000512039] Chr5:113577..180719789 [GRCh37]
Chr5:5p15.33-q35.3
pathogenic
NC_000005.9:g.(?_86400000)_(154000000_?)del deletion Familial adenomatous polyposis 1 [RCV002231249]|Hereditary cancer-predisposing syndrome [RCV000554476] Chr5:86400000..154000000 [GRCh37]
Chr5:5q14.3-33.2
pathogenic
GRCh37/hg19 5q31.2-31.3(chr5:139147238-141540491)x1 copy number loss not provided [RCV000682600] Chr5:139147238..141540491 [GRCh37]
Chr5:5q31.2-31.3
pathogenic
GRCh37/hg19 5p15.33-q35.3(chr5:25328-180693344)x3 copy number gain not provided [RCV000744323] Chr5:25328..180693344 [GRCh37]
Chr5:5p15.33-q35.3
pathogenic
GRCh37/hg19 5p15.33-q35.3(chr5:13648-180905029)x3 copy number gain not provided [RCV000744317] Chr5:13648..180905029 [GRCh37]
Chr5:5p15.33-q35.3
pathogenic
GRCh37/hg19 5q31.3(chr5:141345062-141446303)x3 copy number gain not provided [RCV000745229] Chr5:141345062..141446303 [GRCh37]
Chr5:5q31.3
benign
Single allele deletion Neurodevelopmental disorder [RCV000787436] Chr5:14685137..149511942 [GRCh37]
Chr5:5p15.2-q32
uncertain significance
GRCh37/hg19 5q31.3-32(chr5:140424333-148985999)x3 copy number gain not provided [RCV000848228] Chr5:140424333..148985999 [GRCh37]
Chr5:5q31.3-32
uncertain significance
GRCh37/hg19 5q23.3-33.3(chr5:130125085-157574910) copy number gain not specified [RCV002053526] Chr5:130125085..157574910 [GRCh37]
Chr5:5q23.3-33.3
pathogenic
NM_005471.5(GNPDA1):c.320T>C (p.Leu107Pro) single nucleotide variant Inborn genetic diseases [RCV002752953] Chr5:142006233 [GRCh38]
Chr5:141385798 [GRCh37]
Chr5:5q31.3
uncertain significance
NM_005471.5(GNPDA1):c.700C>T (p.Arg234Cys) single nucleotide variant Inborn genetic diseases [RCV002687378] Chr5:142003157 [GRCh38]
Chr5:141382722 [GRCh37]
Chr5:5q31.3
uncertain significance
NM_005471.5(GNPDA1):c.647T>C (p.Ile216Thr) single nucleotide variant Inborn genetic diseases [RCV002769139] Chr5:142003210 [GRCh38]
Chr5:141382775 [GRCh37]
Chr5:5q31.3
uncertain significance
NM_005471.5(GNPDA1):c.563T>C (p.Val188Ala) single nucleotide variant Inborn genetic diseases [RCV002831063] Chr5:142004963 [GRCh38]
Chr5:141384528 [GRCh37]
Chr5:5q31.3
uncertain significance
NM_005471.5(GNPDA1):c.311C>T (p.Thr104Ile) single nucleotide variant Inborn genetic diseases [RCV003217778] Chr5:142006242 [GRCh38]
Chr5:141385807 [GRCh37]
Chr5:5q31.3
uncertain significance
NM_005471.5(GNPDA1):c.289A>G (p.Ile97Val) single nucleotide variant Inborn genetic diseases [RCV003357800] Chr5:142006264 [GRCh38]
Chr5:141385829 [GRCh37]
Chr5:5q31.3
uncertain significance
NM_005471.5(GNPDA1):c.77A>G (p.Gln26Arg) single nucleotide variant Inborn genetic diseases [RCV003360014] Chr5:142011959 [GRCh38]
Chr5:141391524 [GRCh37]
Chr5:5q31.3
uncertain significance
NM_005471.5(GNPDA1):c.266T>C (p.Met89Thr) single nucleotide variant Inborn genetic diseases [RCV003350359] Chr5:142006287 [GRCh38]
Chr5:141385852 [GRCh37]
Chr5:5q31.3
uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:5199
Count of miRNA genes:1046
Interacting mature miRNAs:1285
Transcripts:ENST00000311337, ENST00000458112, ENST00000500692, ENST00000503229, ENST00000503794, ENST00000504139, ENST00000504424, ENST00000505689, ENST00000507107, ENST00000507559, ENST00000508177, ENST00000510194, ENST00000513454, ENST00000515747, ENST00000542860
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
D5S2437  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh375141,380,280 - 141,380,562UniSTSGRCh37
Build 365141,360,464 - 141,360,746RGDNCBI36
Celera5137,461,059 - 137,461,341RGD
Cytogenetic Map5q21UniSTS
HuRef5136,526,798 - 136,527,080UniSTS
Whitehead-YAC Contig Map5 UniSTS
D5S1636E  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh375141,380,380 - 141,380,515UniSTSGRCh37
Build 365141,360,564 - 141,360,699RGDNCBI36
Celera5137,461,159 - 137,461,294RGD
Cytogenetic Map5q21UniSTS
HuRef5136,526,898 - 136,527,033UniSTS
GeneMap99-GB4 RH Map5528.28UniSTS
NCBI RH Map5891.6UniSTS
D5S2481  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh375141,380,343 - 141,380,688UniSTSGRCh37
Build 365141,360,527 - 141,360,872RGDNCBI36
Celera5137,461,122 - 137,461,467RGD
Cytogenetic Map5q21UniSTS
HuRef5136,526,861 - 136,527,206UniSTS
Stanford-G3 RH Map53969.0UniSTS
Whitehead-YAC Contig Map5 UniSTS
GeneMap99-G3 RH Map53964.0UniSTS
RH25293  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh375141,381,029 - 141,381,267UniSTSGRCh37
Build 365141,361,213 - 141,361,451RGDNCBI36
Celera5137,461,809 - 137,462,036RGD
Cytogenetic Map5q21UniSTS
HuRef5136,527,548 - 136,527,775UniSTS
GeneMap99-GB4 RH Map5528.28UniSTS
NCBI RH Map5891.6UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High
Medium 2164 1795 1437 301 1362 182 4032 1579 3140 404 1457 1549 137 1 1144 2541 6
Low 275 1196 289 323 576 283 325 618 593 15 3 64 38 60 247 2
Below cutoff 9

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_005471 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005268348 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006714747 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011537537 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024454319 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047416582 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054351369 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054351370 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC005740 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF029914 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF048826 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AH005715 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ002231 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK022779 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK290686 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK296452 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC001717 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC012853 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC020769 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC022322 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC024664 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CA432951 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471062 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D31766 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA661926 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENST00000311337   ⟹   ENSP00000311876
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl5142,000,671 - 142,013,027 (-)Ensembl
RefSeq Acc Id: ENST00000500692   ⟹   ENSP00000424275
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl5142,000,674 - 142,013,030 (-)Ensembl
RefSeq Acc Id: ENST00000503229   ⟹   ENSP00000422173
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl5142,005,112 - 142,013,027 (-)Ensembl
RefSeq Acc Id: ENST00000503794   ⟹   ENSP00000423485
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl5142,000,678 - 142,012,973 (-)Ensembl
RefSeq Acc Id: ENST00000504139   ⟹   ENSP00000424625
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl5142,002,086 - 142,013,031 (-)Ensembl
RefSeq Acc Id: ENST00000504424   ⟹   ENSP00000426583
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl5142,011,949 - 142,012,996 (-)Ensembl
RefSeq Acc Id: ENST00000505689   ⟹   ENSP00000421524
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl5142,002,090 - 142,013,041 (-)Ensembl
RefSeq Acc Id: ENST00000507107
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl5142,006,036 - 142,013,027 (-)Ensembl
RefSeq Acc Id: ENST00000507559
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl5142,004,875 - 142,006,314 (-)Ensembl
RefSeq Acc Id: ENST00000508177   ⟹   ENSP00000423674
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl5142,000,678 - 142,012,794 (-)Ensembl
RefSeq Acc Id: ENST00000510194   ⟹   ENSP00000424537
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl5142,005,044 - 142,012,996 (-)Ensembl
RefSeq Acc Id: ENST00000513454   ⟹   ENSP00000423494
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl5141,991,749 - 142,013,027 (-)Ensembl
RefSeq Acc Id: ENST00000515747
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl5142,003,218 - 142,005,441 (-)Ensembl
RefSeq Acc Id: NM_005471   ⟹   NP_005462
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh385142,000,671 - 142,013,027 (-)NCBI
GRCh375141,380,234 - 141,392,620 (-)ENTREZGENE
Build 365141,360,420 - 141,372,776 (-)NCBI Archive
HuRef5136,526,752 - 136,539,141 (-)ENTREZGENE
CHM1_15140,813,651 - 140,826,030 (-)NCBI
T2T-CHM13v2.05142,530,868 - 142,543,231 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005268348   ⟹   XP_005268405
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh385142,000,671 - 142,013,027 (-)NCBI
GRCh375141,380,234 - 141,392,620 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006714747   ⟹   XP_006714810
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh385142,000,671 - 142,013,027 (-)NCBI
Sequence:
RefSeq Acc Id: XM_047416582   ⟹   XP_047272538
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh385142,000,671 - 142,013,027 (-)NCBI
RefSeq Acc Id: XM_054351369   ⟹   XP_054207344
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.05142,530,868 - 142,543,257 (-)NCBI
RefSeq Acc Id: XM_054351370   ⟹   XP_054207345
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.05142,530,868 - 142,543,231 (-)NCBI
Protein Sequences
Protein RefSeqs NP_005462 (Get FASTA)   NCBI Sequence Viewer  
  XP_005268405 (Get FASTA)   NCBI Sequence Viewer  
  XP_006714810 (Get FASTA)   NCBI Sequence Viewer  
  XP_047272538 (Get FASTA)   NCBI Sequence Viewer  
  XP_054207344 (Get FASTA)   NCBI Sequence Viewer  
  XP_054207345 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAB84217 (Get FASTA)   NCBI Sequence Viewer  
  AAB88748 (Get FASTA)   NCBI Sequence Viewer  
  AAC05123 (Get FASTA)   NCBI Sequence Viewer  
  AAC62119 (Get FASTA)   NCBI Sequence Viewer  
  AAH12853 (Get FASTA)   NCBI Sequence Viewer  
  AAH20769 (Get FASTA)   NCBI Sequence Viewer  
  AAH22322 (Get FASTA)   NCBI Sequence Viewer  
  BAA06544 (Get FASTA)   NCBI Sequence Viewer  
  BAF83375 (Get FASTA)   NCBI Sequence Viewer  
  BAG51114 (Get FASTA)   NCBI Sequence Viewer  
  BAH12360 (Get FASTA)   NCBI Sequence Viewer  
  CAA05259 (Get FASTA)   NCBI Sequence Viewer  
  EAW61890 (Get FASTA)   NCBI Sequence Viewer  
  EAW61891 (Get FASTA)   NCBI Sequence Viewer  
  EAW61892 (Get FASTA)   NCBI Sequence Viewer  
  EAW61893 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSP00000311876
  ENSP00000311876.6
  ENSP00000421524.1
  ENSP00000422173.1
  ENSP00000423485
  ENSP00000423485.1
  ENSP00000423494.1
  ENSP00000423674.1
  ENSP00000424275
  ENSP00000424275.1
  ENSP00000424537.1
  ENSP00000424625.1
  ENSP00000426583.1
GenBank Protein P46926 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_005462   ⟸   NM_005471
- UniProtKB: B7Z3X4 (UniProtKB/Swiss-Prot),   D3DQE7 (UniProtKB/Swiss-Prot),   P46926 (UniProtKB/Swiss-Prot),   A8K3S1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005268405   ⟸   XM_005268348
- Peptide Label: isoform X1
- UniProtKB: A8K3S1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006714810   ⟸   XM_006714747
- Peptide Label: isoform X2
- UniProtKB: B7Z3X4 (UniProtKB/Swiss-Prot),   D3DQE7 (UniProtKB/Swiss-Prot),   P46926 (UniProtKB/Swiss-Prot),   A8K3S1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSP00000422173   ⟸   ENST00000503229
RefSeq Acc Id: ENSP00000423485   ⟸   ENST00000503794
RefSeq Acc Id: ENSP00000426583   ⟸   ENST00000504424
RefSeq Acc Id: ENSP00000424625   ⟸   ENST00000504139
RefSeq Acc Id: ENSP00000421524   ⟸   ENST00000505689
RefSeq Acc Id: ENSP00000423674   ⟸   ENST00000508177
RefSeq Acc Id: ENSP00000311876   ⟸   ENST00000311337
RefSeq Acc Id: ENSP00000424537   ⟸   ENST00000510194
RefSeq Acc Id: ENSP00000423494   ⟸   ENST00000513454
RefSeq Acc Id: ENSP00000424275   ⟸   ENST00000500692
RefSeq Acc Id: XP_047272538   ⟸   XM_047416582
- Peptide Label: isoform X2
- UniProtKB: P46926 (UniProtKB/Swiss-Prot),   B7Z3X4 (UniProtKB/Swiss-Prot),   D3DQE7 (UniProtKB/Swiss-Prot),   A8K3S1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054207344   ⟸   XM_054351369
- Peptide Label: isoform X1
- UniProtKB: A8K3S1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054207345   ⟸   XM_054351370
- Peptide Label: isoform X2
- UniProtKB: P46926 (UniProtKB/Swiss-Prot),   B7Z3X4 (UniProtKB/Swiss-Prot),   D3DQE7 (UniProtKB/Swiss-Prot),   A8K3S1 (UniProtKB/TrEMBL)
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P46926-F1-model_v2 AlphaFold P46926 1-289 view protein structure

Promoters
RGD ID:6803227
Promoter ID:HG_KWN:51390
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   HeLa_S3,   Jurkat,   K562,   Lymphoblastoid,   NB4
Transcripts:NM_005471,   UC003LMF.2,   UC003LMG.2,   UC003LMH.2
Position:
Human AssemblyChrPosition (strand)Source
Build 365141,371,866 - 141,372,852 (-)MPROMDB
RGD ID:6850594
Promoter ID:EP73088
Type:single initiation site
Name:HS_GNPI
Description:Glucosamine-6-phosphate isomerase.
SO ACC ID:SO:0000170
Source:EPD (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:NEDO full length human cDNA sequencing project.; Oligo-capping
Position:
Human AssemblyChrPosition (strand)Source
Build 365141,372,776 - 141,372,836EPD
RGD ID:6871064
Promoter ID:EPDNEW_H8696
Type:initiation region
Name:GNPDA1_1
Description:glucosamine-6-phosphate deaminase 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh385142,013,027 - 142,013,087EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:4417 AgrOrtholog
COSMIC GNPDA1 COSMIC
Ensembl Genes ENSG00000113552 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000311337 ENTREZGENE
  ENST00000311337.11 UniProtKB/Swiss-Prot
  ENST00000500692 ENTREZGENE
  ENST00000500692.6 UniProtKB/Swiss-Prot
  ENST00000503229.5 UniProtKB/TrEMBL
  ENST00000503794 ENTREZGENE
  ENST00000503794.5 UniProtKB/Swiss-Prot
  ENST00000504139.5 UniProtKB/TrEMBL
  ENST00000504424.1 UniProtKB/TrEMBL
  ENST00000505689.5 UniProtKB/TrEMBL
  ENST00000508177.5 UniProtKB/Swiss-Prot
  ENST00000510194.5 UniProtKB/TrEMBL
  ENST00000513454.5 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.1360 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000113552 GTEx
HGNC ID HGNC:4417 ENTREZGENE
Human Proteome Map GNPDA1 Human Proteome Map
InterPro Glc/Gal-6P_isomerase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Glucosamine6P_isomerase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Glucosamine6P_isomerase_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NagB/RpiA_transferase-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:10007 UniProtKB/Swiss-Prot
NCBI Gene 10007 ENTREZGENE
OMIM 601798 OMIM
PANTHER GLUCOSAMINE-6-PHOSPHATE ISOMERASE 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR11280 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Glucosamine_iso UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA28796 PharmGKB
PROSITE GLC_GALNAC_ISOMERASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF100950 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A8K3S1 ENTREZGENE, UniProtKB/TrEMBL
  B7Z3X4 ENTREZGENE
  D3DQE7 ENTREZGENE
  D6R917_HUMAN UniProtKB/TrEMBL
  D6R9P4_HUMAN UniProtKB/TrEMBL
  D6RAY7_HUMAN UniProtKB/TrEMBL
  D6RB13_HUMAN UniProtKB/TrEMBL
  D6RFF8_HUMAN UniProtKB/TrEMBL
  D6RFK5_HUMAN UniProtKB/TrEMBL
  GNPI1_HUMAN UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary B7Z3X4 UniProtKB/Swiss-Prot
  D3DQE7 UniProtKB/Swiss-Prot