ITGAX (integrin subunit alpha X) - Rat Genome Database

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Gene: ITGAX (integrin subunit alpha X) Homo sapiens
Analyze
Symbol: ITGAX
Name: integrin subunit alpha X
RGD ID: 1348968
HGNC Page HGNC
Description: Exhibits receptor tyrosine kinase binding activity. Involved in several processes, including heterotypic cell-cell adhesion; positive regulation of angiogenesis; and positive regulation of endothelial tube morphogenesis. Localizes to cell surface.
Type: protein-coding
RefSeq Status: REVIEWED
Also known as: CD11 antigen-like family member C; CD11C; complement component 3 receptor 4 subunit; integrin alpha X; integrin alpha-X; integrin, alpha X (antigen CD11C (p150), alpha polypeptide); integrin, alpha X (complement component 3 receptor 4 subunit); leu M5, alpha subunit; leukocyte adhesion glycoprotein p150,95 alpha chain; leukocyte adhesion receptor p150,95; leukocyte surface antigen p150,95, alpha subunit; myeloid membrane antigen, alpha subunit; p150 95 integrin alpha chain; SLEB6
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: LOC100422479  
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1631,355,134 - 31,382,999 (+)EnsemblGRCh38hg38GRCh38
GRCh38.p13 Ensembl1631,355,134 - 31,382,997 (+)EnsemblGRCh38hg38GRCh38
GRCh381631,355,167 - 31,382,999 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371631,366,497 - 31,394,320 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361631,274,010 - 31,301,819 (+)NCBINCBI36hg18NCBI36
Build 341631,274,009 - 31,301,819NCBI
Cytogenetic Map16p11.2NCBI
HuRef1628,926,765 - 28,954,574 (+)NCBIHuRef
CHM1_11632,684,563 - 32,713,005 (+)NCBICHM1_1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,1-dichloroethene  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (ISO)
17beta-estradiol 3-benzoate  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
5-aza-2'-deoxycytidine  (EXP)
9-cis-retinoic acid  (EXP)
aflatoxin B2  (EXP)
all-trans-retinoic acid  (EXP)
antirheumatic drug  (EXP)
arsenite(3-)  (ISO)
arsenous acid  (EXP)
atorvastatin calcium  (EXP)
benzo[a]pyrene  (EXP)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (ISO)
bryostatin 1  (EXP)
butanal  (EXP)
calciol  (EXP)
calcitriol  (EXP)
carbon nanotube  (ISO)
chlorpyrifos  (EXP)
choline  (ISO)
chrysene  (ISO)
cimetidine  (EXP)
cisplatin  (EXP)
cyproconazole  (ISO)
dexamethasone  (ISO)
diarsenic trioxide  (EXP)
dimethyl sulfoxide  (EXP)
endosulfan  (ISO)
epoxiconazole  (ISO)
estrone  (ISO)
ethanol  (ISO)
folic acid  (ISO)
fulvestrant  (ISO)
GW 4064  (ISO)
heparin  (EXP)
imiquimod  (ISO)
indirubin-3'-monoxime  (ISO)
indole-3-methanol  (ISO)
irinotecan  (EXP)
L-methionine  (ISO)
lead diacetate  (ISO)
lead(0)  (ISO)
lead(2+)  (ISO)
lipopolysaccharide  (ISO)
N-nitrosodiethylamine  (ISO)
nickel atom  (EXP)
O-methyleugenol  (EXP)
ozone  (ISO)
paracetamol  (ISO)
pentanal  (EXP)
phorbol 13-acetate 12-myristate  (EXP)
piperonyl butoxide  (ISO)
pirinixic acid  (ISO)
propanal  (EXP)
protein kinase inhibitor  (EXP)
quercetin  (ISO)
serpentine asbestos  (ISO)
silicon dioxide  (EXP)
sodium dichromate  (EXP)
sodium fluoride  (ISO)
succimer  (EXP,ISO)
sulforaphane  (EXP)
tamoxifen  (ISO)
testosterone  (ISO)
tetrachloromethane  (ISO)
titanium dioxide  (ISO)
trimellitic anhydride  (ISO)
triprolidine  (EXP)
triptonide  (ISO)
tris(2-butoxyethyl) phosphate  (EXP)
vanadium atom  (EXP)
vanadium(0)  (EXP)
vitamin D  (EXP)
zinc atom  (EXP)
zinc(0)  (EXP)

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:1967280   PMID:1976870   PMID:2303426   PMID:3284962   PMID:3327687   PMID:3549901   PMID:4062888   PMID:7512600   PMID:7621072   PMID:8020569   PMID:8045597   PMID:8573344  
PMID:8598231   PMID:8645576   PMID:9176697   PMID:9250811   PMID:9473377   PMID:9598326   PMID:9885225   PMID:11174197   PMID:11369639   PMID:11460493   PMID:11799095   PMID:11840270  
PMID:11845978   PMID:11937543   PMID:12083416   PMID:12100475   PMID:12208882   PMID:12351396   PMID:12477932   PMID:12576324   PMID:14702039   PMID:15489334   PMID:15665082   PMID:15730520  
PMID:15900581   PMID:16037628   PMID:16344560   PMID:16716806   PMID:17045822   PMID:17726152   PMID:17726260   PMID:18047418   PMID:18204098   PMID:18386786   PMID:18541300   PMID:18580071  
PMID:19129174   PMID:19234460   PMID:19237023   PMID:19257981   PMID:19800635   PMID:19910635   PMID:19946888   PMID:20032971   PMID:20033057   PMID:20382884   PMID:20479115   PMID:20563599  
PMID:20574620   PMID:20610651   PMID:20660331   PMID:20679211   PMID:20888334   PMID:20962850   PMID:21030716   PMID:21239711   PMID:21257965   PMID:21273385   PMID:21362770   PMID:21666055  
PMID:21874872   PMID:22017400   PMID:22244783   PMID:22393018   PMID:22539788   PMID:22808111   PMID:22844116   PMID:23118428   PMID:23246582   PMID:23874603   PMID:23981064   PMID:24124148  
PMID:24129562   PMID:24270810   PMID:25155097   PMID:25231265   PMID:25278023   PMID:25361058   PMID:25411967   PMID:26153037   PMID:26255872   PMID:26306739   PMID:26309367   PMID:26852488  
PMID:26927560   PMID:26968188   PMID:27108704   PMID:27119555   PMID:27309860   PMID:28535664   PMID:28603911   PMID:28756897   PMID:28838763   PMID:30348717   PMID:30397336   PMID:30873824  
PMID:31227791   PMID:31541017   PMID:32824307   PMID:33032823   PMID:33055281  


Genomics

Comparative Map Data
ITGAX
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1631,355,134 - 31,382,999 (+)EnsemblGRCh38hg38GRCh38
GRCh38.p13 Ensembl1631,355,134 - 31,382,997 (+)EnsemblGRCh38hg38GRCh38
GRCh381631,355,167 - 31,382,999 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371631,366,497 - 31,394,320 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361631,274,010 - 31,301,819 (+)NCBINCBI36hg18NCBI36
Build 341631,274,009 - 31,301,819NCBI
Cytogenetic Map16p11.2NCBI
HuRef1628,926,765 - 28,954,574 (+)NCBIHuRef
CHM1_11632,684,563 - 32,713,005 (+)NCBICHM1_1
Itgax
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397127,728,697 - 127,749,829 (+)NCBIGRCm39mm39
GRCm39 Ensembl7127,728,719 - 127,749,829 (+)Ensembl
GRCm387128,129,526 - 128,150,657 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7128,129,547 - 128,150,657 (+)EnsemblGRCm38mm10GRCm38
MGSCv377135,273,082 - 135,294,171 (+)NCBIGRCm37mm9NCBIm37
MGSCv367127,920,716 - 127,941,805 (+)NCBImm8
Celera7127,963,226 - 127,984,316 (+)NCBICelera
Cytogenetic Map7F3NCBI
Itgax
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21182,709,653 - 182,740,709 (+)NCBI
Rnor_6.0 Ensembl1199,555,722 - 199,576,932 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01199,555,560 - 199,576,948 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01206,583,608 - 206,604,971 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41187,396,184 - 187,416,273 (+)NCBIRGSC3.4rn4RGSC3.4
Celera1180,365,552 - 180,386,832 (+)NCBICelera
Cytogenetic Map1q37NCBI
Itgax
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554938,196,593 - 8,220,296 (+)NCBIChiLan1.0ChiLan1.0
ITGAX
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11631,724,539 - 31,754,603 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1631,724,113 - 31,797,249 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01623,574,807 - 23,612,638 (-)NCBIMhudiblu_PPA_v0panPan3
ITGAX
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1616,898,143 - 16,927,270 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl616,808,971 - 16,996,286 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha618,487,797 - 18,499,807 (-)NCBI
Dog10K_Boxer_Tasha622,643,925 - 22,660,443 (+)NCBI
ROS_Cfam_1.0617,023,380 - 17,052,559 (-)NCBI
UMICH_Zoey_3.1616,826,486 - 16,855,639 (-)NCBI
UNSW_CanFamBas_1.0616,745,644 - 16,774,812 (-)NCBI
UU_Cfam_GSD_1.0617,057,566 - 17,086,388 (-)NCBI
Itgax
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344125,593,065 - 125,612,720 (+)NCBI
SpeTri2.0NW_0049365438,424,095 - 8,442,850 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ITGAX
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1528,058,172 - 28,087,253 (+)NCBI
ChlSab1.1 Ensembl528,058,456 - 28,086,838 (+)Ensembl
Itgax
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462478214,380,234 - 14,397,552 (+)NCBI

Position Markers
RH65242  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371631,393,988 - 31,394,149UniSTSGRCh37
Build 361631,301,489 - 31,301,650RGDNCBI36
Celera1628,914,130 - 28,914,291RGD
Cytogenetic Map16p11.2UniSTS
HuRef1628,954,244 - 28,954,405UniSTS
RH79906  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371631,393,221 - 31,393,455UniSTSGRCh37
Build 361631,300,722 - 31,300,956RGDNCBI36
Celera1628,914,824 - 28,915,058RGD
Cytogenetic Map16p11.2UniSTS
HuRef1628,953,477 - 28,953,711UniSTS
RH69186  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371631,393,392 - 31,393,532UniSTSGRCh37
Build 361631,300,893 - 31,301,033RGDNCBI36
Celera1628,914,747 - 28,914,887RGD
Cytogenetic Map16p11.2UniSTS
HuRef1628,953,648 - 28,953,788UniSTS
SHGC-35326  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371631,393,273 - 31,393,474UniSTSGRCh37
Build 361631,300,774 - 31,300,975RGDNCBI36
Celera1628,914,805 - 28,915,006RGD
Cytogenetic Map16p11.2UniSTS
HuRef1628,953,529 - 28,953,730UniSTS
TNG Radiation Hybrid Map1617479.0UniSTS
Stanford-G3 RH Map161637.0UniSTS
GeneMap99-G3 RH Map161597.0UniSTS
ITGAX_2523  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371631,393,731 - 31,394,465UniSTSGRCh37
Build 361631,301,232 - 31,301,966RGDNCBI36
Celera1628,913,814 - 28,914,548RGD
HuRef1628,953,987 - 28,954,721UniSTS
SHGC-64124  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371631,382,842 - 31,382,958UniSTSGRCh37
Build 361631,290,343 - 31,290,459RGDNCBI36
Celera1628,925,321 - 28,925,437RGD
Cytogenetic Map16p11.2UniSTS
HuRef1628,943,098 - 28,943,214UniSTS
TNG Radiation Hybrid Map1617483.0UniSTS
D1S1423  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map10p12.1UniSTS
Cytogenetic Map10p12.1-p11.2UniSTS
Cytogenetic Map9q34.13UniSTS
Cytogenetic Map16q22.1UniSTS
Cytogenetic Map21q22.2UniSTS
Cytogenetic Map3p24.2UniSTS
Cytogenetic Map9q32UniSTS
Cytogenetic Map1q24UniSTS
Cytogenetic Map1q21UniSTS
Cytogenetic Map1p36.33UniSTS
Cytogenetic Map7p15.2UniSTS
Cytogenetic Map6p21UniSTS
Cytogenetic Map5q31UniSTS
Cytogenetic Map6p22.3-p21.32UniSTS
Cytogenetic Map6q22.33UniSTS
Cytogenetic Map3q29UniSTS
Cytogenetic Map17p11.2UniSTS
Cytogenetic Map19q13.3UniSTS
Cytogenetic Map1p36.13UniSTS
Cytogenetic Map5q33.3UniSTS
Cytogenetic Map22q11.22UniSTS
Cytogenetic Map11q13.2-q13.3UniSTS
Cytogenetic Map3q22-q24UniSTS
Cytogenetic Map8p21.3UniSTS
Cytogenetic Map7q32UniSTS
Cytogenetic Map1p32.3UniSTS
Cytogenetic Map19p13.12UniSTS
Cytogenetic Map4q21.1UniSTS
Cytogenetic Map12q13.13UniSTS
Cytogenetic Map7q11.2UniSTS
Cytogenetic Map1p22.1UniSTS
Cytogenetic Map2q32UniSTS
Cytogenetic MapXq13.1UniSTS
Cytogenetic Map9q12UniSTS
Cytogenetic Map3q26.2UniSTS
Cytogenetic Map22q11.21UniSTS
Cytogenetic Map10q23-q24UniSTS
Cytogenetic Map17q12UniSTS
Cytogenetic Map1p36.21UniSTS
Cytogenetic Map19p13.2UniSTS
Cytogenetic Map16q24.3UniSTS
Cytogenetic Map9q34.3UniSTS
Cytogenetic Map4p14UniSTS
Cytogenetic Map2p12UniSTS
Cytogenetic Map16p11.2UniSTS
Cytogenetic Map3q23UniSTS
Cytogenetic Map18q22.1UniSTS
Cytogenetic Map13q12UniSTS
Cytogenetic Map10p14-p13UniSTS
Cytogenetic Map12p13.31UniSTS
Cytogenetic Map14q24.3UniSTS
Cytogenetic Map22q13.2UniSTS
Cytogenetic Map19q13.11UniSTS
Cytogenetic Map11q23-q24UniSTS
Cytogenetic Map11q13.1UniSTS
Cytogenetic Map12q24.31UniSTS
Cytogenetic Map17q25UniSTS
Cytogenetic Map16q24.1UniSTS
Cytogenetic Map5q23.3UniSTS
Cytogenetic Map19q13.43UniSTS
Cytogenetic Map17q11.2UniSTS
Cytogenetic Map20q13.12UniSTS
Cytogenetic MapXp11.23UniSTS
Cytogenetic Map19q13.42UniSTS
Cytogenetic Map16q13UniSTS
Cytogenetic Map11q25UniSTS
Cytogenetic Map22cen-q12.3UniSTS
Cytogenetic Map10p13UniSTS
Cytogenetic Map2p11.2UniSTS
Cytogenetic Map15q11.2-q21.3UniSTS
Cytogenetic Map1p21.2UniSTS
Cytogenetic Map19p13UniSTS
Cytogenetic Map7q21.13UniSTS
Cytogenetic Map7q31.1UniSTS
Cytogenetic Map17p13.3UniSTS
Cytogenetic Map1p35.1UniSTS
Cytogenetic Map16q24UniSTS
Cytogenetic Map3q25UniSTS
Cytogenetic Map2q24.2UniSTS
Cytogenetic Map1p31.3UniSTS
Cytogenetic Map14q31.1UniSTS
Cytogenetic Map22q13.1UniSTS
Cytogenetic Map20q13.31UniSTS
Cytogenetic Map19p13.3UniSTS
Cytogenetic Map6p12.1UniSTS
Cytogenetic Map6q25.3UniSTS
Cytogenetic Map1q32.1UniSTS
Cytogenetic Map11q24.2UniSTS
Cytogenetic Map10p15.1UniSTS
Cytogenetic Map2p13.1UniSTS
Cytogenetic Map19q13.12UniSTS
Cytogenetic Map12p13.32UniSTS
Cytogenetic Map4q35.1UniSTS
Cytogenetic Map2p13.3UniSTS
Cytogenetic Map1p22UniSTS
Cytogenetic Map2q14UniSTS
Cytogenetic Map4q12UniSTS
Cytogenetic Map16p13.3UniSTS
Cytogenetic Map14q32.33UniSTS
Cytogenetic Map1p36.1UniSTS
Cytogenetic Map8p11.21UniSTS
Cytogenetic MapXq26.3UniSTS
Cytogenetic Map8q24.11UniSTS
Cytogenetic Map9q22.31UniSTS
Cytogenetic Map7q11.23UniSTS
Cytogenetic Map2p15UniSTS
Cytogenetic Map5q31.1UniSTS
Cytogenetic Map8q24.13UniSTS
Cytogenetic Map17p13UniSTS
Cytogenetic Map8p11.22UniSTS
Cytogenetic Map4q28UniSTS
Cytogenetic Map15q24.1UniSTS
Cytogenetic Map1q41-q42UniSTS
Cytogenetic Map10q22UniSTS
Cytogenetic Map5q35.3UniSTS
Cytogenetic Map20q11.21UniSTS
Cytogenetic Map8q24.3UniSTS
Cytogenetic Map12p13.1-p12.3UniSTS
Cytogenetic Map6p21.33UniSTS
Cytogenetic Map22q13.33UniSTS
Cytogenetic Map19p12UniSTS
Cytogenetic Map1p13.1UniSTS
Cytogenetic Map7q22.1UniSTS
Cytogenetic Map14q12UniSTS
Cytogenetic Map19q13.32UniSTS
Cytogenetic Map11q13.2UniSTS
Cytogenetic Map15q22.31UniSTS
Cytogenetic Map5q12.3UniSTS
Cytogenetic Map7q33UniSTS
Cytogenetic Map17q21.2UniSTS
Cytogenetic Map4q23UniSTS
Cytogenetic Map12q13.12UniSTS
Cytogenetic Map18p11.21UniSTS
Cytogenetic Map10q26.11UniSTS
Cytogenetic Map14q32.12UniSTS
Cytogenetic Map11q24.1UniSTS
Cytogenetic Map18q23UniSTS
Cytogenetic Map2q31.1UniSTS
Cytogenetic Map18p11.31UniSTS
Cytogenetic Map2q24.3UniSTS
Cytogenetic Map11q23UniSTS
Cytogenetic Map17q21.31UniSTS
Cytogenetic Map13q34UniSTS
Cytogenetic Map1p34.3UniSTS
Cytogenetic Map10p14UniSTS
Cytogenetic Map15q22.2UniSTS
Cytogenetic Map17q25.1UniSTS
Cytogenetic Map5q32UniSTS
Cytogenetic Map4p16.3UniSTS
Cytogenetic Map12q23.2UniSTS
Cytogenetic Map11q12.3UniSTS
Cytogenetic Map16q12.2UniSTS
Cytogenetic Map9q22.2UniSTS
Cytogenetic Map1q21.3UniSTS
Cytogenetic Map1p35.3UniSTS
Cytogenetic Map19q13.2UniSTS
Cytogenetic Map11p15.5UniSTS
Cytogenetic Map7q22UniSTS
Cytogenetic Map18p11.31-p11.21UniSTS
Cytogenetic Map3p25.3UniSTS
Cytogenetic Map3q13UniSTS
Cytogenetic Map21q22.3UniSTS
Cytogenetic Map1q43UniSTS
Cytogenetic Map19p13.11UniSTS
Cytogenetic Map19q13.41UniSTS
Cytogenetic Map7p21.2UniSTS
Cytogenetic Map12q21.1UniSTS
Cytogenetic Map15q15.1UniSTS
Cytogenetic Map15q13.1UniSTS
Cytogenetic Map1q42.1UniSTS
Cytogenetic Map5q31.2UniSTS
Cytogenetic Map1q21.2UniSTS
Cytogenetic Map17p13.1UniSTS
Cytogenetic Map1p34-p33UniSTS
Cytogenetic Map3q22.1UniSTS
Cytogenetic Map7p14UniSTS
Cytogenetic Map15q21UniSTS
Cytogenetic Map12q24.2UniSTS
Cytogenetic Map20q13UniSTS
Cytogenetic Map19q13.3-q13.4UniSTS
Cytogenetic Map17q21.32UniSTS
Cytogenetic Map15q11.2UniSTS
Cytogenetic Map8p23-p22UniSTS
Cytogenetic Map1p12UniSTS
Cytogenetic Map3q13.33UniSTS
Cytogenetic Map10p12.33UniSTS
Cytogenetic Map5q13.2UniSTS
Cytogenetic Map3q26UniSTS
Cytogenetic Map9p21.2UniSTS
Cytogenetic Map2p16.1UniSTS
Cytogenetic Map5q21.3UniSTS
Cytogenetic Map1p36.22UniSTS
Cytogenetic Map1p34.2UniSTS
Cytogenetic Map3q26.31UniSTS
Cytogenetic MapXp22.33UniSTS
Cytogenetic MapYp11.3UniSTS
Cytogenetic Map17q24.1UniSTS
Cytogenetic Map9q21.11UniSTS
Cytogenetic Map6q22.31UniSTS
Cytogenetic Map9q21.13UniSTS
Cytogenetic Map10q11.22UniSTS
Cytogenetic Map22q13.31UniSTS
Cytogenetic Map17p12UniSTS
Cytogenetic Map17q21.33UniSTS
Cytogenetic Map5p13.3UniSTS
Cytogenetic Map10q21.3UniSTS
Cytogenetic Map10q22.1UniSTS
Cytogenetic Map1p34UniSTS
Cytogenetic MapXp22UniSTS
Cytogenetic Map20p12.3-p11.21UniSTS
Cytogenetic Map2q37.1UniSTS
Cytogenetic Map6p25UniSTS
Cytogenetic MapXq27.2UniSTS
Cytogenetic Map4q31.1UniSTS
Cytogenetic Map4q31UniSTS
Cytogenetic Map22q13.1-q13.2UniSTS
Cytogenetic MapXq28UniSTS
Cytogenetic Map1p36.11UniSTS
Cytogenetic Map12q13.3UniSTS
Cytogenetic Map3q26.33UniSTS
Cytogenetic Map19q13.4UniSTS
Cytogenetic Map14q32UniSTS
Cytogenetic Map10q24.3UniSTS
Cytogenetic Map16q21UniSTS
Cytogenetic Map2p13UniSTS
Cytogenetic Map19q13.1UniSTS
Cytogenetic Map7q21-q22UniSTS
Cytogenetic Map2q11.2UniSTS
Cytogenetic Map17q25.3UniSTS
Cytogenetic Map4q22.1UniSTS
Cytogenetic Map11q22.1UniSTS
Cytogenetic Map12q14.2UniSTS
Cytogenetic Map20p13UniSTS
Cytogenetic Map7q36.3UniSTS
Cytogenetic Map20q11.21-q11.23UniSTS
Cytogenetic Map2q33.2UniSTS
Cytogenetic Map12q22UniSTS
Cytogenetic Map20q13.13UniSTS
Cytogenetic Map21p11.1UniSTS
Cytogenetic Map1p35-p34.3UniSTS
Cytogenetic Map7p11.2UniSTS
Cytogenetic Map13q14UniSTS
Cytogenetic Map7q36.1UniSTS
Cytogenetic Map12q24.31-q24.32UniSTS
Cytogenetic Map17q21.1UniSTS
Cytogenetic Map3q12.3UniSTS
Cytogenetic Map12qUniSTS
Cytogenetic Map11q13.5UniSTS
Cytogenetic Map2p14UniSTS
Cytogenetic Map2q14.3UniSTS
Cytogenetic Map7q34UniSTS
Cytogenetic Map14q32.1UniSTS
Cytogenetic Map21q22.11UniSTS
Cytogenetic Map3p14.1UniSTS
Cytogenetic Map16q23.2UniSTS
Cytogenetic Map7q32.1UniSTS
Cytogenetic Map17q22UniSTS
Cytogenetic Map4q31.23UniSTS
Cytogenetic Map11p15.3UniSTS
Cytogenetic Map3q27.1UniSTS
Cytogenetic Map2p22.3UniSTS
Cytogenetic Map22q13UniSTS
Cytogenetic Map1q32UniSTS
Cytogenetic Map11q14UniSTS
Cytogenetic MapXq13.2UniSTS
Cytogenetic Map16p13.12UniSTS
Cytogenetic MapXq22.3UniSTS
Cytogenetic Map9p12UniSTS
Cytogenetic Map4p16.1UniSTS
Cytogenetic Map11q23.1UniSTS
Cytogenetic Map3q27.3UniSTS
Cytogenetic Map16q23.1UniSTS
Cytogenetic Map15q15.2UniSTS
Cytogenetic Map2p21UniSTS
Cytogenetic Map13q33.3UniSTS
Cytogenetic Map15q22-q24UniSTS
Cytogenetic Map14q32.11UniSTS
Cytogenetic Map7p14.3UniSTS
Cytogenetic Map14q21.2UniSTS
Cytogenetic Map15q25.2UniSTS
Cytogenetic Map15q23UniSTS
Cytogenetic Map2p23.3UniSTS
Cytogenetic Map4p15.31UniSTS
Cytogenetic Map1q22UniSTS
Cytogenetic Map20q13.1UniSTS
Cytogenetic Map15q21.3UniSTS
Cytogenetic Map10q23.33UniSTS
Cytogenetic Map4q26UniSTS
Cytogenetic MapXq24UniSTS
Cytogenetic Map10q23.1UniSTS
Cytogenetic Map6p21.1UniSTS
Cytogenetic Map15q22.1-q22.31UniSTS
Cytogenetic Map1q31-q41UniSTS
Cytogenetic Map6q23.3UniSTS
Cytogenetic Map7q21.2UniSTS
Cytogenetic Map14q23UniSTS
Cytogenetic Map12q11-q12UniSTS
Cytogenetic Map17q23.3UniSTS
Cytogenetic Map4q24UniSTS
Cytogenetic Map1p32UniSTS
Cytogenetic Map3p21.1-p14.2UniSTS
Cytogenetic Map12q22-q23.1UniSTS
Cytogenetic Map6p22.1UniSTS
Cytogenetic Map6q24.2UniSTS
Cytogenetic Map9p13.3UniSTS
Cytogenetic Map6p24.1UniSTS
Cytogenetic Map19q13UniSTS
Cytogenetic Map20q11.22-q11.23UniSTS
Cytogenetic Map3p22.3UniSTS
Cytogenetic Map12q12UniSTS
Cytogenetic MapXq13-q21UniSTS
Cytogenetic Map9q34.11UniSTS
Cytogenetic Map16p13.13UniSTS
Cytogenetic Map10pter-q25.3UniSTS
Cytogenetic Map9p24.1UniSTS
Cytogenetic Map12p13.2UniSTS
Cytogenetic Map12q24UniSTS
Cytogenetic Map3q28-q29UniSTS
Cytogenetic Map10q26UniSTS
Cytogenetic Map6p22.2UniSTS
Cytogenetic Map2q13UniSTS
Cytogenetic Map12q24.2-q24.31UniSTS
Cytogenetic Map22q12.2UniSTS
Cytogenetic Map1q32.2-q41UniSTS
Cytogenetic Map11q22-q23UniSTS
Cytogenetic Map12p13.3UniSTS
Cytogenetic Map1p34.1UniSTS
Cytogenetic Map22q11UniSTS
Cytogenetic Map2q21.1UniSTS
Cytogenetic Map16p13.11UniSTS
Cytogenetic Map1q25.1UniSTS
Cytogenetic Map1p36.3UniSTS
Cytogenetic Map9p21UniSTS
Cytogenetic Map6p21.3UniSTS
Cytogenetic Map1q41UniSTS
Cytogenetic Map11q13.1-q13.3UniSTS
Cytogenetic Map16p13UniSTS
Cytogenetic Map15q26UniSTS
Cytogenetic Map18q21UniSTS
Cytogenetic Map4p15.1-p14UniSTS
Cytogenetic Map8q11.2UniSTS
Cytogenetic Map16q22UniSTS
Cytogenetic Map15q11-q13UniSTS
Cytogenetic Map7p12.3UniSTS
Cytogenetic Map7p13UniSTS
Cytogenetic Map15q26.1UniSTS
Cytogenetic Map14q22.1UniSTS
Cytogenetic Map2q12.3UniSTS
Cytogenetic MapXp22.12UniSTS
Cytogenetic Map20q11.23UniSTS
Cytogenetic Map1q21.1UniSTS
Cytogenetic Map1p36.31UniSTS
Cytogenetic Map16q11.2UniSTS
Cytogenetic Map14q32.2UniSTS
Cytogenetic Map11p15.4UniSTS
Cytogenetic Map22q11.1UniSTS
Cytogenetic Map5q33.2UniSTS
Cytogenetic Map14q23.1UniSTS
Cytogenetic Map7q32.3UniSTS
Cytogenetic Map20q13.3UniSTS
Cytogenetic Map10q26.13UniSTS
Cytogenetic Map1p31.1UniSTS
Cytogenetic Map11q13.4UniSTS
Cytogenetic Map11q23.3UniSTS
Cytogenetic Map15q25.1UniSTS
Cytogenetic Map9p13UniSTS
Cytogenetic Map2p24.2UniSTS
Cytogenetic Map9q33.3UniSTS
Cytogenetic Map19q13.31UniSTS
Cytogenetic Map11q12.2UniSTS
Cytogenetic Map7p15.3UniSTS
Cytogenetic Map6p25.2UniSTS
Cytogenetic Map6q25.1UniSTS
Cytogenetic Map3p21.31UniSTS
Cytogenetic Map17q23.2UniSTS
Cytogenetic MapXq25UniSTS
Cytogenetic Map2p25.1UniSTS
Cytogenetic Map1q25.3UniSTS
Cytogenetic Map6p24-p22.3UniSTS
Cytogenetic Map6q21UniSTS
Cytogenetic Map16p12.2UniSTS
Cytogenetic Map3q21-q24UniSTS
Cytogenetic Map4q13UniSTS
Cytogenetic Map11p13UniSTS
Cytogenetic Map9q34UniSTS
Cytogenetic Map8q13.1UniSTS
Cytogenetic Map5q21.2UniSTS
Cytogenetic Map4q34.3UniSTS
Cytogenetic Map3p22.1UniSTS
Cytogenetic Map2q37.3UniSTS
Cytogenetic Map8p23.1UniSTS
Cytogenetic Map1p13.3UniSTS
Cytogenetic Map15q14UniSTS
Cytogenetic Map13q13.3UniSTS
Cytogenetic Map12q13.2UniSTS
Cytogenetic Map1q31UniSTS
Cytogenetic Map7q11.21UniSTS
Cytogenetic Map10q26.3UniSTS
Cytogenetic Map15q15UniSTS
Cytogenetic MapXp11.4UniSTS
Cytogenetic Map8q24.12UniSTS
Cytogenetic Map15q22UniSTS
Cytogenetic Map1q25.2UniSTS
Cytogenetic Map13q11-q12UniSTS
Cytogenetic Map10q24.2UniSTS
Cytogenetic Map15q21.1UniSTS
Cytogenetic Map15q13.2UniSTS
Cytogenetic Map6q25.2UniSTS
Cytogenetic Map14q11.2UniSTS
Cytogenetic Map2q33.1UniSTS
Cytogenetic Map6q14.1UniSTS
Cytogenetic Map3q23-q24UniSTS
Cytogenetic Map2p25.1-p24.1UniSTS
Cytogenetic Map12q14.3UniSTS
Cytogenetic Map6q16.1UniSTS
Cytogenetic Map5p13.1UniSTS
Cytogenetic Map5q13UniSTS
Cytogenetic Map20pter-p12UniSTS
Cytogenetic MapXp22.11UniSTS
Cytogenetic Map16p13.2UniSTS
Cytogenetic Map16q22.3UniSTS
Cytogenetic Map7q31.3UniSTS
Cytogenetic Map21q22.13UniSTS
Cytogenetic Map1p21UniSTS
Cytogenetic Map8p11UniSTS
Cytogenetic Map7p14.2UniSTS
Cytogenetic Map8p11.23UniSTS
Cytogenetic Map18p11.22UniSTS
Cytogenetic Map18q21.33UniSTS
Cytogenetic Map9p24.3UniSTS
Cytogenetic Map11q22.3UniSTS
Cytogenetic Map14q22.2UniSTS
Cytogenetic Map20p11.22-p11.1UniSTS
Cytogenetic Map6p21.31UniSTS
Cytogenetic Map14q22.3UniSTS
Cytogenetic Map12q15UniSTS
Cytogenetic Map7q31UniSTS
Cytogenetic Map2q12.2UniSTS
Cytogenetic Map8p12UniSTS
Cytogenetic Map7p22.1UniSTS
Cytogenetic Map6p12.3UniSTS
Cytogenetic Map11q12-q13UniSTS
Cytogenetic Map18q21.1UniSTS
Cytogenetic Map10p11.21UniSTS
Cytogenetic Map6p22-p21UniSTS
Cytogenetic Map17q21.1-q21.3UniSTS
Cytogenetic Map12q24.33UniSTS
Cytogenetic Map4p15.32UniSTS
Cytogenetic Map1q42.13UniSTS
Cytogenetic Map19q12UniSTS
Cytogenetic Map3p14.3UniSTS
Cytogenetic Map12p13.2-p12.3UniSTS
Cytogenetic Map9q22.32UniSTS
Cytogenetic Map1p36.3-p36.2UniSTS
Cytogenetic Map5q22.2UniSTS
Cytogenetic Map4p15.2UniSTS
Cytogenetic Map4p15.3UniSTS
Cytogenetic Map4q28.1UniSTS
Cytogenetic Map12q13.1-q13.2UniSTS
Cytogenetic Map19q13.33UniSTS
Cytogenetic Map1p31UniSTS
Cytogenetic Map17p13.2UniSTS
Cytogenetic Map15q15.3UniSTS
Cytogenetic Map13q14.11UniSTS
Cytogenetic Map9p22.3UniSTS
Cytogenetic Map8q22.2UniSTS
Cytogenetic Map8q21.11UniSTS
Cytogenetic Map22q12.1UniSTS
Cytogenetic Map3q13.2UniSTS
Cytogenetic Map2q35UniSTS
Cytogenetic Map2q33.3UniSTS
Cytogenetic Map8p22UniSTS
Cytogenetic Map10q22.2UniSTS
Cytogenetic Map20p12.1UniSTS
Cytogenetic Map6q13UniSTS
Cytogenetic Map6q22.32UniSTS
Cytogenetic Map5q34UniSTS
Cytogenetic Map5p15.2UniSTS
Cytogenetic Map5q11.2UniSTS
Cytogenetic Map2q36.1UniSTS
Cytogenetic Map18q11.2UniSTS
Cytogenetic Map18q12.2UniSTS
Cytogenetic Map14q21.3UniSTS
Cytogenetic Map13q33.1UniSTS
Cytogenetic Map12p11.21UniSTS
Cytogenetic Map12q23.1UniSTS
Cytogenetic Map16p12.1UniSTS
Cytogenetic Map2q33UniSTS
Cytogenetic Map5q12.1UniSTS
Cytogenetic Map12q24.13UniSTS
Cytogenetic Map13q14.2UniSTS
Cytogenetic Map7q36UniSTS
Cytogenetic Map10q22.3-q23.2UniSTS
Cytogenetic Map7p15UniSTS
Cytogenetic Map14q32.31UniSTS
Cytogenetic Map11q21UniSTS
Cytogenetic Map4q21.3UniSTS
Cytogenetic Map7p13-p12UniSTS
Cytogenetic Map8p21.2UniSTS
Cytogenetic Map4q22UniSTS
Cytogenetic Map11q13UniSTS
Cytogenetic Map3q12.1UniSTS
Cytogenetic Map7q21.1-q22UniSTS
Cytogenetic Map17q21UniSTS
Cytogenetic Map3q13.13-q13.2UniSTS
Cytogenetic Map3p21.3UniSTS
Cytogenetic Map13q32.2UniSTS
Cytogenetic Map3q26.32UniSTS
Cytogenetic Map15qUniSTS
Cytogenetic Map2p13.2UniSTS
Cytogenetic Map3p12.3UniSTS
Cytogenetic Map10q11.23UniSTS
Cytogenetic Map3q11.2UniSTS
Cytogenetic Map12q13.11UniSTS
Cytogenetic Map13q14.13UniSTS
Cytogenetic Map10q23UniSTS
Cytogenetic Map11p11.2UniSTS
Cytogenetic Map6q16.2UniSTS
Cytogenetic Map3q21.1UniSTS
Cytogenetic Map10q11.21UniSTS
Cytogenetic Map1p13.2UniSTS
Cytogenetic Map6p24.2UniSTS
Cytogenetic Map20q13.33UniSTS

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2138
Count of miRNA genes:848
Interacting mature miRNAs:982
Transcripts:ENST00000268296, ENST00000562138, ENST00000562522, ENST00000562918, ENST00000564308, ENST00000567409, ENST00000571644
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High 13 13
Medium 228 1088 276 109 1324 71 511 68 652 84 173 778 39 505 239 1
Low 2104 1811 1420 500 489 378 3349 1809 2953 289 1175 677 128 1 699 2243 2 2
Below cutoff 90 78 27 13 105 14 488 312 114 43 101 133 7 306

Sequence

Nucleotide Sequences
RefSeq Transcripts NG_011451 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_000887 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001286375 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011545852 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011545854 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024450263 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_950797 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC093520 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AH002565 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK074047 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK293367 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK296666 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK309642 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AW014280 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC037577 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC038237 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BM149283 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CA308944 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471192 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA324567 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KC248101 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KC248102 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KC248103 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KC248104 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KC248105 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KC248106 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KC248107 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KC248108 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KC248109 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  L19440 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M81695 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENST00000268296   ⟹   ENSP00000268296
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1631,355,176 - 31,382,999 (+)Ensembl
RefSeq Acc Id: ENST00000562138
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1631,371,474 - 31,372,654 (+)Ensembl
RefSeq Acc Id: ENST00000562522   ⟹   ENSP00000454623
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1631,355,222 - 31,382,943 (+)Ensembl
RefSeq Acc Id: ENST00000562918   ⟹   ENSP00000483860
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1631,355,174 - 31,358,455 (+)Ensembl
RefSeq Acc Id: ENST00000564308
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1631,355,134 - 31,356,278 (+)Ensembl
RefSeq Acc Id: ENST00000567409
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1631,355,188 - 31,357,862 (+)Ensembl
RefSeq Acc Id: ENST00000571644
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1631,359,937 - 31,382,932 (+)Ensembl
RefSeq Acc Id: NM_000887   ⟹   NP_000878
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381631,355,176 - 31,382,999 (+)NCBI
GRCh371631,366,488 - 31,394,320 (+)NCBI
Build 361631,274,010 - 31,301,819 (+)NCBI Archive
HuRef1628,926,711 - 28,954,574 (+)NCBI
CHM1_11632,684,563 - 32,713,005 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001286375   ⟹   NP_001273304
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381631,355,176 - 31,382,999 (+)NCBI
HuRef1628,926,711 - 28,954,574 (+)NCBI
CHM1_11632,684,563 - 32,713,005 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011545852   ⟹   XP_011544154
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381631,355,167 - 31,376,913 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011545854   ⟹   XP_011544156
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381631,355,167 - 31,371,715 (+)NCBI
Sequence:
RefSeq Acc Id: XM_024450263   ⟹   XP_024306031
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381631,360,641 - 31,382,943 (+)NCBI
Sequence:
RefSeq Acc Id: XR_950797
RefSeq Status:
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381631,355,167 - 31,382,178 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_000878   ⟸   NM_000887
- Peptide Label: isoform 2 precursor
- UniProtKB: P20702 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001273304   ⟸   NM_001286375
- Peptide Label: isoform 1 precursor
- UniProtKB: P20702 (UniProtKB/Swiss-Prot),   H3BN02 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011544154   ⟸   XM_011545852
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_011544156   ⟸   XM_011545854
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_024306031   ⟸   XM_024450263
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSP00000268296   ⟸   ENST00000268296
RefSeq Acc Id: ENSP00000483860   ⟸   ENST00000562918
RefSeq Acc Id: ENSP00000454623   ⟸   ENST00000562522
Protein Domains
VWFA

Promoters
RGD ID:6793020
Promoter ID:HG_KWN:23625
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:K562,   Lymphoblastoid,   NB4
Transcripts:ENST00000394880,   NM_000887,   UC002EBT.2,   UC010CAO.1
Position:
Human AssemblyChrPosition (strand)Source
Build 361631,273,356 - 31,274,032 (+)MPROMDB
RGD ID:7232093
Promoter ID:EPDNEW_H21792
Type:initiation region
Name:ITGAX_1
Description:integrin subunit alpha X
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381631,355,189 - 31,355,249EPDNEW

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
NM_000887.4(ITGAX):c.155G>A (p.Gly52Glu) single nucleotide variant Malignant melanoma [RCV000071099] Chr16:31356636 [GRCh38]
Chr16:31367957 [GRCh37]
Chr16:31275458 [NCBI36]
Chr16:16p11.2
not provided
NM_000887.4(ITGAX):c.329C>T (p.Pro110Leu) single nucleotide variant Malignant melanoma [RCV000071100] Chr16:31357263 [GRCh38]
Chr16:31368584 [GRCh37]
Chr16:31276085 [NCBI36]
Chr16:16p11.2
not provided
NM_000887.4(ITGAX):c.2080G>A (p.Glu694Lys) single nucleotide variant Malignant melanoma [RCV000071101] Chr16:31371704 [GRCh38]
Chr16:31383025 [GRCh37]
Chr16:31290526 [NCBI36]
Chr16:16p11.2
not provided
NM_000887.4(ITGAX):c.2458A>C (p.Thr820Pro) single nucleotide variant Malignant melanoma [RCV000071102] Chr16:31373340 [GRCh38]
Chr16:31384661 [GRCh37]
Chr16:31292162 [NCBI36]
Chr16:16p11.2
not provided
GRCh38/hg38 16p11.2-11.1(chr16:30691912-36160463)x3 copy number gain See cases [RCV000133811] Chr16:30691912..36160463 [GRCh38]
Chr16:30703233..35147508 [GRCh37]
Chr16:30610734..35005009 [NCBI36]
Chr16:16p11.2-11.1
pathogenic
GRCh38/hg38 16p11.2(chr16:29909613-31438697)x3 copy number gain See cases [RCV000135339] Chr16:29909613..31438697 [GRCh38]
Chr16:29920934..31450018 [GRCh37]
Chr16:29828435..31357519 [NCBI36]
Chr16:16p11.2
pathogenic
GRCh38/hg38 16p12.2-11.2(chr16:23752047-31943755)x3 copy number gain See cases [RCV000141141] Chr16:23752047..31943755 [GRCh38]
Chr16:23763368..31955076 [GRCh37]
Chr16:23670869..31862577 [NCBI36]
Chr16:16p12.2-11.2
pathogenic
GRCh37/hg19 16p11.2(chr16:31154186-31926800)x3 copy number gain Ductal breast carcinoma [RCV000207245] Chr16:31154186..31926800 [GRCh37]
Chr16:16p11.2
uncertain significance
GRCh37/hg19 16p13.3-11.2(chr16:1279324-31926800)x3 copy number gain Ductal breast carcinoma [RCV000207053] Chr16:1279324..31926800 [GRCh37]
Chr16:16p13.3-11.2
uncertain significance
Single allele deletion Branched-chain keto acid dehydrogenase kinase deficiency [RCV000735205] Chr16:30554158..31536880 [GRCh37]
Chr16:16p11.2
uncertain significance
GRCh37/hg19 16p13.3-q24.3(chr16:69193-90274381)x3 copy number gain See cases [RCV000446684] Chr16:69193..90274381 [GRCh37]
Chr16:16p13.3-q24.3
pathogenic
GRCh37/hg19 16p11.2(chr16:31343812-31405543)x3 copy number gain See cases [RCV000445926] Chr16:31343812..31405543 [GRCh37]
Chr16:16p11.2
uncertain significance
GRCh37/hg19 16p11.2(chr16:30830287-31827011)x4 copy number gain See cases [RCV000447708] Chr16:30830287..31827011 [GRCh37]
Chr16:16p11.2
uncertain significance
GRCh37/hg19 16p11.2(chr16:28826162-29043901)x1 copy number loss See cases [RCV000448084] Chr16:28826162..29043901 [GRCh37]
Chr16:16p11.2
likely pathogenic
GRCh37/hg19 16p13.2-q24.3(chr16:9273328-89548493)x3 copy number gain See cases [RCV000511622] Chr16:9273328..89548493 [GRCh37]
Chr16:16p13.2-q24.3
uncertain significance
maternal UPD(16p) complex Hemimegalencephaly [RCV000494707] Chr16:1280042..33710558 [GRCh37]
Chr16:16p13.3-11.2
pathogenic
GRCh37/hg19 16p13.3-q24.3(chr16:85881-90155062)x3 copy number gain See cases [RCV000512138] Chr16:85881..90155062 [GRCh37]
Chr16:16p13.3-q24.3
pathogenic
GRCh37/hg19 16p13.3-q24.3(chr16:85881-90155062) copy number gain See cases [RCV000511296] Chr16:85881..90155062 [GRCh37]
Chr16:16p13.3-q24.3
pathogenic
GRCh37/hg19 16p11.2(chr16:31198100-31407832)x3 copy number gain See cases [RCV000512181] Chr16:31198100..31407832 [GRCh37]
Chr16:16p11.2
uncertain significance
GRCh37/hg19 16p13.3-q24.3(chr16:88165-90274695)x3 copy number gain not provided [RCV000738918] Chr16:88165..90274695 [GRCh37]
Chr16:16p13.3-q24.3
pathogenic
GRCh37/hg19 16p13.3-q24.3(chr16:61451-90294632)x3 copy number gain not provided [RCV000738915] Chr16:61451..90294632 [GRCh37]
Chr16:16p13.3-q24.3
pathogenic
GRCh37/hg19 16p13.3-q24.3(chr16:88165-90163275)x3 copy number gain not provided [RCV000738917] Chr16:88165..90163275 [GRCh37]
Chr16:16p13.3-q24.3
pathogenic
GRCh37/hg19 16p11.2(chr16:30738551-34194635)x3 copy number gain not provided [RCV000739123] Chr16:30738551..34194635 [GRCh37]
Chr16:16p11.2
benign
NM_000887.5(ITGAX):c.1434C>T (p.Ile478=) single nucleotide variant not provided [RCV000880229] Chr16:31363009 [GRCh38]
Chr16:31374330 [GRCh37]
Chr16:16p11.2
benign
NM_000887.5(ITGAX):c.2660A>G (p.Lys887Arg) single nucleotide variant not provided [RCV000950811] Chr16:31377034 [GRCh38]
Chr16:31388355 [GRCh37]
Chr16:16p11.2
benign
NM_000887.5(ITGAX):c.1463G>A (p.Arg488Gln) single nucleotide variant not provided [RCV000903801] Chr16:31363038 [GRCh38]
Chr16:31374359 [GRCh37]
Chr16:16p11.2
likely benign
NM_000887.5(ITGAX):c.1392C>T (p.Ser464=) single nucleotide variant not provided [RCV000899794] Chr16:31362967 [GRCh38]
Chr16:31374288 [GRCh37]
Chr16:16p11.2
benign
NM_000887.5(ITGAX):c.1239C>T (p.Leu413=) single nucleotide variant not provided [RCV000891161] Chr16:31362633 [GRCh38]
Chr16:31373954 [GRCh37]
Chr16:16p11.2
likely benign
NM_000887.5(ITGAX):c.3099C>T (p.Asp1033=) single nucleotide variant not provided [RCV000911321] Chr16:31380304 [GRCh38]
Chr16:31391625 [GRCh37]
Chr16:16p11.2
likely benign
GRCh37/hg19 16p13.3-11.2(chr16:5805001-34230001) copy number gain Microcephaly [RCV001252948] Chr16:5805001..34230001 [GRCh37]
Chr16:16p13.3-11.2
pathogenic
GRCh37/hg19 16p11.2(chr16:30350747-31905898)x3 copy number gain not provided [RCV001258619] Chr16:30350747..31905898 [GRCh37]
Chr16:16p11.2
uncertain significance

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:6152 AgrOrtholog
COSMIC ITGAX COSMIC
Ensembl Genes ENSG00000140678 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSP00000268296 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSP00000454623 ENTREZGENE, UniProtKB/TrEMBL
  ENSP00000483860 UniProtKB/TrEMBL
Ensembl Transcript ENST00000268296 ENTREZGENE, UniProtKB/Swiss-Prot
  ENST00000562522 ENTREZGENE, UniProtKB/TrEMBL
  ENST00000562918 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.130 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.40.50.410 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000140678 GTEx
HGNC ID HGNC:6152 ENTREZGENE
Human Proteome Map ITGAX Human Proteome Map
InterPro FG-GAP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Int_alpha_beta-p UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Integrin_alpha UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Integrin_alpha-2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Integrin_alpha_C_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Integrin_alpha_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Integrin_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VWF_A UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  vWFA_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:3687 UniProtKB/Swiss-Prot
NCBI Gene 3687 ENTREZGENE
OMIM 151510 OMIM
Pfam FG-GAP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Integrin_alpha UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Integrin_alpha2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VWA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA29952 PharmGKB
PRINTS INTEGRINA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE FG_GAP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  INTEGRIN_ALPHA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VWFA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART Int_alpha UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VWA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF53300 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF69179 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A087X131_HUMAN UniProtKB/TrEMBL
  H3BN02 ENTREZGENE, UniProtKB/TrEMBL
  ITAX_HUMAN UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary Q8IVA6 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-12-22 ITGAX  integrin subunit alpha X  ITGAX  integrin alpha X  Symbol and/or name change 5135510 APPROVED
2015-12-08 ITGAX  integrin alpha X  ITGAX  integrin, alpha X (complement component 3 receptor 4 subunit)  Symbol and/or name change 5135510 APPROVED