RNF167 (ring finger protein 167) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: RNF167 (ring finger protein 167) Homo sapiens
Analyze
Symbol: RNF167
Name: ring finger protein 167
RGD ID: 1348849
HGNC Page HGNC:24544
Description: Enables ubiquitin protein ligase activity. Involved in several processes, including cellular response to leucine starvation; protein polyubiquitination; and regulation of TORC1 signaling. Located in endosome. Is active in cytosol and endolysosome membrane.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 5730408C10Rik; DKFZp566H073; E3 ubiquitin-protein ligase RNF167; LP2254; RING-type E3 ubiquitin transferase RNF167; RING105
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38174,940,092 - 4,945,222 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl174,940,008 - 4,945,222 (+)EnsemblGRCh38hg38GRCh38
GRCh37174,843,387 - 4,848,517 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36174,784,375 - 4,789,262 (+)NCBINCBI36Build 36hg18NCBI36
Build 34174,784,374 - 4,789,260NCBI
Celera174,858,441 - 4,863,328 (+)NCBICelera
Cytogenetic Map17p13.2NCBI
HuRef174,731,220 - 4,736,107 (+)NCBIHuRef
CHM1_1174,852,968 - 4,857,851 (+)NCBICHM1_1
T2T-CHM13v2.0174,830,440 - 4,835,570 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References

References - curated
# Reference Title Reference Citation
1. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:7566098   PMID:8889548   PMID:14702039   PMID:15489334   PMID:15498874   PMID:16314844   PMID:16344560   PMID:16712791   PMID:17353931   PMID:19549727   PMID:19690564   PMID:21873635  
PMID:23129617   PMID:23353890   PMID:23414517   PMID:24387786   PMID:24816252   PMID:26186194   PMID:27808481   PMID:28514442   PMID:28986522   PMID:29643511   PMID:32409562   PMID:32687490  
PMID:32814053   PMID:33594058   PMID:33650289   PMID:33961781   PMID:35114100   PMID:35271311   PMID:35337019   PMID:35887194  


Genomics

Comparative Map Data
RNF167
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38174,940,092 - 4,945,222 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl174,940,008 - 4,945,222 (+)EnsemblGRCh38hg38GRCh38
GRCh37174,843,387 - 4,848,517 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36174,784,375 - 4,789,262 (+)NCBINCBI36Build 36hg18NCBI36
Build 34174,784,374 - 4,789,260NCBI
Celera174,858,441 - 4,863,328 (+)NCBICelera
Cytogenetic Map17p13.2NCBI
HuRef174,731,220 - 4,736,107 (+)NCBIHuRef
CHM1_1174,852,968 - 4,857,851 (+)NCBICHM1_1
T2T-CHM13v2.0174,830,440 - 4,835,570 (+)NCBIT2T-CHM13v2.0
Rnf167
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391170,538,056 - 70,542,247 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1170,538,061 - 70,542,247 (+)EnsemblGRCm39 Ensembl
GRCm381170,647,230 - 70,651,421 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1170,647,235 - 70,651,421 (+)EnsemblGRCm38mm10GRCm38
MGSCv371170,461,091 - 70,464,923 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361170,463,784 - 70,467,616 (+)NCBIMGSCv36mm8
Celera1178,198,564 - 78,202,365 (+)NCBICelera
Cytogenetic Map11B3NCBI
cM Map1143.21NCBI
Rnf167
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81055,859,254 - 55,863,546 (+)NCBIGRCr8
mRatBN7.21055,360,603 - 55,364,927 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1055,360,543 - 55,364,927 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1060,041,245 - 60,045,537 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01059,529,751 - 59,534,043 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01055,028,857 - 55,033,149 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01057,268,331 - 57,272,667 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1057,268,375 - 57,272,660 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01057,013,953 - 57,018,261 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41057,527,033 - 57,531,325 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11057,540,655 - 57,544,941 (+)NCBI
Celera1054,506,191 - 54,510,483 (+)NCBICelera
Cytogenetic Map10q24NCBI
Rnf167
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546710,353,291 - 10,357,021 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495546710,352,650 - 10,357,214 (+)NCBIChiLan1.0ChiLan1.0
RNF167
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21912,549,927 - 12,555,290 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11714,518,383 - 14,523,649 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0174,988,275 - 4,993,423 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1174,975,724 - 4,981,335 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl174,975,849 - 4,981,335 (+)Ensemblpanpan1.1panPan2
RNF167
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1531,673,540 - 31,676,705 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl531,674,284 - 31,676,441 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha531,810,460 - 31,815,311 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0531,775,873 - 31,780,727 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl531,775,873 - 31,780,678 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1531,742,411 - 31,747,298 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0531,702,117 - 31,706,971 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0531,878,493 - 31,883,347 (-)NCBIUU_Cfam_GSD_1.0
Rnf167
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560253,129,789 - 53,134,251 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366772,766,907 - 2,770,225 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366772,766,724 - 2,771,111 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RNF167
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1251,966,032 - 51,970,898 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11251,966,028 - 51,970,811 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21254,034,738 - 54,039,447 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RNF167
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1164,421,744 - 4,426,433 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl164,421,744 - 4,428,576 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605917,207,418 - 17,212,510 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rnf167
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247868,798,696 - 8,802,427 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247868,797,907 - 8,802,623 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in RNF167
23 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 17p13.3-13.2(chr17:193307-5652222)x1 copy number loss See cases [RCV000053384] Chr17:193307..5652222 [GRCh38]
Chr17:45835..5555542 [GRCh37]
Chr17:43098..5496266 [NCBI36]
Chr17:17p13.3-13.2
pathogenic
GRCh38/hg38 17p13.2-13.1(chr17:3601515-7178024)x1 copy number loss See cases [RCV000053406] Chr17:3601515..7178024 [GRCh38]
Chr17:3504809..7081343 [GRCh37]
Chr17:3451558..7022067 [NCBI36]
Chr17:17p13.2-13.1
pathogenic
NM_001165417.1(SLC25A11):c.551A>G (p.Asn184Ser) single nucleotide variant Malignant melanoma [RCV000071571] Chr17:4938392 [GRCh38]
Chr17:4841687 [GRCh37]
Chr17:4782432 [NCBI36]
Chr17:17p13.2
not provided
GRCh38/hg38 17p13.3-13.2(chr17:2062380-5258340)x1 copy number loss See cases [RCV000133721] Chr17:2062380..5258340 [GRCh38]
Chr17:1965674..5161635 [GRCh37]
Chr17:1912424..5102359 [NCBI36]
Chr17:17p13.3-13.2
pathogenic
GRCh38/hg38 17p13.3-13.1(chr17:162088-6959050)x1 copy number loss See cases [RCV000134135] Chr17:162088..6959050 [GRCh38]
Chr17:45835..6862369 [GRCh37]
Chr17:11879..6803093 [NCBI36]
Chr17:17p13.3-13.1
pathogenic
GRCh38/hg38 17p13.3-13.1(chr17:198748-7491129)x3 copy number gain See cases [RCV000134970] Chr17:198748..7491129 [GRCh38]
Chr17:50690..7394448 [GRCh37]
Chr17:48539..7335172 [NCBI36]
Chr17:17p13.3-13.1
pathogenic
GRCh38/hg38 17p13.2(chr17:4044302-5943772)x1 copy number loss See cases [RCV000135548] Chr17:4044302..5943772 [GRCh38]
Chr17:3947596..5847092 [GRCh37]
Chr17:3894345..5787816 [NCBI36]
Chr17:17p13.2
likely pathogenic
GRCh38/hg38 17p13.3-13.1(chr17:162016-7697012)x1 copy number loss See cases [RCV000138214] Chr17:162016..7697012 [GRCh38]
Chr17:45835..7600330 [GRCh37]
Chr17:11807..7541055 [NCBI36]
Chr17:17p13.3-13.1
pathogenic
GRCh38/hg38 17p13.3-12(chr17:162016-12343901)x3 copy number gain See cases [RCV000138531] Chr17:162016..12343901 [GRCh38]
Chr17:45835..12247218 [GRCh37]
Chr17:11807..12187943 [NCBI36]
Chr17:17p13.3-12
pathogenic
GRCh38/hg38 17p13.2(chr17:4092608-5354473)x3 copy number gain See cases [RCV000139650] Chr17:4092608..5354473 [GRCh38]
Chr17:3995902..5257768 [GRCh37]
Chr17:3942651..5198492 [NCBI36]
Chr17:17p13.2
likely benign
GRCh38/hg38 17p13.2(chr17:4915519-5197126)x1 copy number loss See cases [RCV000141706] Chr17:4915519..5197126 [GRCh38]
Chr17:4818814..5100421 [GRCh37]
Chr17:4759591..5041145 [NCBI36]
Chr17:17p13.2
likely pathogenic|uncertain significance
GRCh38/hg38 17p13.3-13.2(chr17:150732-5935377)x1 copy number loss See cases [RCV000141658] Chr17:150732..5935377 [GRCh38]
Chr17:525..5838697 [GRCh37]
Chr17:525..5779421 [NCBI36]
Chr17:17p13.3-13.2
pathogenic
GRCh38/hg38 17p13.3-12(chr17:150732-14764202)x3 copy number gain See cases [RCV000142236] Chr17:150732..14764202 [GRCh38]
Chr17:525..14667519 [GRCh37]
Chr17:525..14608244 [NCBI36]
Chr17:17p13.3-12
pathogenic
GRCh37/hg19 17p13.2(chr17:4762588-4844009)x3 copy number gain See cases [RCV000446549] Chr17:4762588..4844009 [GRCh37]
Chr17:17p13.2
uncertain significance
GRCh37/hg19 17p13.3-13.2(chr17:1751557-5378509)x1 copy number loss See cases [RCV000445994] Chr17:1751557..5378509 [GRCh37]
Chr17:17p13.3-13.2
pathogenic
GRCh37/hg19 17p13.3-13.1(chr17:1113102-6742486) copy number gain See cases [RCV000445679] Chr17:1113102..6742486 [GRCh37]
Chr17:17p13.3-13.1
pathogenic
NM_015528.3(RNF167):c.833dup (p.Pro279fs) duplication Renal carnitine transport defect [RCV000417084] Chr17:4944792..4944793 [GRCh38]
Chr17:4848087..4848088 [GRCh37]
Chr17:17p13.2
benign
GRCh37/hg19 17p13.2(chr17:4633847-4856516)x1 copy number loss See cases [RCV000510443] Chr17:4633847..4856516 [GRCh37]
Chr17:17p13.2
uncertain significance
GRCh37/hg19 17p13.3-q25.3(chr17:526-81041938) copy number gain See cases [RCV000511439] Chr17:526..81041938 [GRCh37]
Chr17:17p13.3-q25.3
pathogenic
GRCh37/hg19 17p13.3-12(chr17:525-15027737)x3 copy number gain See cases [RCV000511786] Chr17:525..15027737 [GRCh37]
Chr17:17p13.3-12
pathogenic
GRCh37/hg19 17p13.3-q25.3(chr17:526-81041938)x3 copy number gain See cases [RCV000512441] Chr17:526..81041938 [GRCh37]
Chr17:17p13.3-q25.3
pathogenic
GRCh37/hg19 17p13.3-12(chr17:525-11186432)x3 copy number gain not provided [RCV000683866] Chr17:525..11186432 [GRCh37]
Chr17:17p13.3-12
pathogenic
GRCh37/hg19 17p13.2(chr17:4475016-4884701)x3 copy number gain not provided [RCV000683882] Chr17:4475016..4884701 [GRCh37]
Chr17:17p13.2
uncertain significance
GRCh37/hg19 17p13.2(chr17:4633847-4926646)x3 copy number gain not provided [RCV000683883] Chr17:4633847..4926646 [GRCh37]
Chr17:17p13.2
uncertain significance
GRCh37/hg19 17p13.2(chr17:4036861-5174346)x3 copy number gain not provided [RCV000683881] Chr17:4036861..5174346 [GRCh37]
Chr17:17p13.2
uncertain significance
GRCh37/hg19 17p13.3-q25.3(chr17:12344-81057996)x3 copy number gain not provided [RCV000739325] Chr17:12344..81057996 [GRCh37]
Chr17:17p13.3-q25.3
pathogenic
GRCh37/hg19 17p13.3-q25.3(chr17:8547-81060040)x3 copy number gain not provided [RCV000739324] Chr17:8547..81060040 [GRCh37]
Chr17:17p13.3-q25.3
pathogenic
GRCh37/hg19 17p13.3-q25.3(chr17:7214-81058310)x3 copy number gain not provided [RCV000739320] Chr17:7214..81058310 [GRCh37]
Chr17:17p13.3-q25.3
pathogenic
GRCh37/hg19 17p13.2(chr17:3336162-4918458)x1 copy number loss not provided [RCV000739374] Chr17:3336162..4918458 [GRCh37]
Chr17:17p13.2
likely pathogenic
NC_000017.11:g.(?_4898726)_(4948404_?)del deletion Congenital myasthenic syndrome 4A [RCV001033817] Chr17:4802021..4851699 [GRCh37]
Chr17:17p13.2
pathogenic
GRCh37/hg19 17p13.3-13.2(chr17:47546-6287620) copy number gain Chromosome 17P13.3, telomeric, duplication syndrome [RCV000767586] Chr17:47546..6287620 [GRCh37]
Chr17:17p13.3-13.2
pathogenic
NC_000017.10:g.(?_4802011)_(4850135_?)dup duplication Congenital myasthenic syndrome 4A [RCV000795439] Chr17:4898716..4946840 [GRCh38]
Chr17:4802011..4850135 [GRCh37]
Chr17:17p13.2
uncertain significance
GRCh37/hg19 17p13.2(chr17:4845435-5097302)x3 copy number gain not provided [RCV000847650] Chr17:4845435..5097302 [GRCh37]
Chr17:17p13.2
uncertain significance
GRCh37/hg19 17p13.2(chr17:3759126-6128911)x1 copy number loss not provided [RCV000849625] Chr17:3759126..6128911 [GRCh37]
Chr17:17p13.2
uncertain significance
GRCh37/hg19 17p13.3-13.2(chr17:8547-5627408)x1 copy number loss See cases [RCV001007429] Chr17:8547..5627408 [GRCh37]
Chr17:17p13.3-13.2
pathogenic
NM_015528.3(RNF167):c.419T>C (p.Ile140Thr) single nucleotide variant Inborn genetic diseases [RCV003239346] Chr17:4942890 [GRCh38]
Chr17:4846185 [GRCh37]
Chr17:17p13.2
uncertain significance
NM_015528.3(RNF167):c.291+7G>A single nucleotide variant not provided [RCV001638597] Chr17:4942473 [GRCh38]
Chr17:4845768 [GRCh37]
Chr17:17p13.2
benign
NM_015528.3(RNF167):c.38C>T (p.Ala13Val) single nucleotide variant not provided [RCV000974370] Chr17:4940947 [GRCh38]
Chr17:4844242 [GRCh37]
Chr17:17p13.2
benign
NM_015528.3(RNF167):c.165+9C>T single nucleotide variant not provided [RCV000948445] Chr17:4941166 [GRCh38]
Chr17:4844461 [GRCh37]
Chr17:17p13.2
benign
NC_000017.11:g.(?_4898726)_(5024161_?)dup duplication Congenital myasthenic syndrome 4A [RCV003117706]|Spastic ataxia 2 [RCV001032478] Chr17:4802021..4927456 [GRCh37]
Chr17:17p13.2
uncertain significance
GRCh37/hg19 17p13.2(chr17:4113551-5023913) copy number loss not specified [RCV002052580] Chr17:4113551..5023913 [GRCh37]
Chr17:17p13.2
uncertain significance
Single allele duplication 7p22.1 microduplication syndrome [RCV002227783] Chr17:4772213..5119909 [GRCh38]
Chr17:17p13.2
uncertain significance
NM_015528.3(RNF167):c.614G>A (p.Arg205Gln) single nucleotide variant Inborn genetic diseases [RCV002687670] Chr17:4943463 [GRCh38]
Chr17:4846758 [GRCh37]
Chr17:17p13.2
uncertain significance
NM_015528.3(RNF167):c.4C>T (p.His2Tyr) single nucleotide variant Inborn genetic diseases [RCV002685277] Chr17:4940913 [GRCh38]
Chr17:4844208 [GRCh37]
Chr17:17p13.2
uncertain significance
GRCh37/hg19 17p13.2(chr17:4658216-5266343)x3 copy number gain not provided [RCV002475693] Chr17:4658216..5266343 [GRCh37]
Chr17:17p13.2
uncertain significance
NM_015528.3(RNF167):c.724A>G (p.Lys242Glu) single nucleotide variant Inborn genetic diseases [RCV002973116] Chr17:4944611 [GRCh38]
Chr17:4847906 [GRCh37]
Chr17:17p13.2
uncertain significance
NM_015528.3(RNF167):c.320G>A (p.Gly107Asp) single nucleotide variant Inborn genetic diseases [RCV002992414] Chr17:4942605 [GRCh38]
Chr17:4845900 [GRCh37]
Chr17:17p13.2
uncertain significance
NM_015528.3(RNF167):c.583C>T (p.Arg195Cys) single nucleotide variant Inborn genetic diseases [RCV002865068] Chr17:4943432 [GRCh38]
Chr17:4846727 [GRCh37]
Chr17:17p13.2
uncertain significance
NM_015528.3(RNF167):c.533C>T (p.Thr178Ile) single nucleotide variant Inborn genetic diseases [RCV002733640] Chr17:4943241 [GRCh38]
Chr17:4846536 [GRCh37]
Chr17:17p13.2
uncertain significance
NM_015528.3(RNF167):c.793C>T (p.Arg265Trp) single nucleotide variant Inborn genetic diseases [RCV002689551] Chr17:4944756 [GRCh38]
Chr17:4848051 [GRCh37]
Chr17:17p13.2
uncertain significance
NM_015528.3(RNF167):c.762C>A (p.Ser254Arg) single nucleotide variant Inborn genetic diseases [RCV002659936] Chr17:4944725 [GRCh38]
Chr17:4848020 [GRCh37]
Chr17:17p13.2
uncertain significance
NM_015528.3(RNF167):c.286C>T (p.Leu96Phe) single nucleotide variant Inborn genetic diseases [RCV002950119] Chr17:4942461 [GRCh38]
Chr17:4845756 [GRCh37]
Chr17:17p13.2
uncertain significance
NM_015528.3(RNF167):c.562A>G (p.Met188Val) single nucleotide variant Inborn genetic diseases [RCV002987354] Chr17:4943270 [GRCh38]
Chr17:4846565 [GRCh37]
Chr17:17p13.2
uncertain significance
NM_015528.3(RNF167):c.497A>G (p.Asn166Ser) single nucleotide variant Inborn genetic diseases [RCV002892800] Chr17:4943205 [GRCh38]
Chr17:4846500 [GRCh37]
Chr17:17p13.2
uncertain significance
NM_015528.3(RNF167):c.451C>T (p.Leu151Phe) single nucleotide variant Inborn genetic diseases [RCV002896586] Chr17:4942922 [GRCh38]
Chr17:4846217 [GRCh37]
Chr17:17p13.2
uncertain significance
NM_015528.3(RNF167):c.793C>G (p.Arg265Gly) single nucleotide variant Inborn genetic diseases [RCV002896672] Chr17:4944756 [GRCh38]
Chr17:4848051 [GRCh37]
Chr17:17p13.2
uncertain significance
NM_015528.3(RNF167):c.64A>C (p.Thr22Pro) single nucleotide variant Inborn genetic diseases [RCV002898446] Chr17:4940973 [GRCh38]
Chr17:4844268 [GRCh37]
Chr17:17p13.2
uncertain significance
NM_015528.3(RNF167):c.745G>A (p.Ala249Thr) single nucleotide variant Inborn genetic diseases [RCV002879107] Chr17:4944632 [GRCh38]
Chr17:4847927 [GRCh37]
Chr17:17p13.2
uncertain significance
NM_015528.3(RNF167):c.254C>T (p.Ala85Val) single nucleotide variant Inborn genetic diseases [RCV002678132] Chr17:4942429 [GRCh38]
Chr17:4845724 [GRCh37]
Chr17:17p13.2
uncertain significance
NM_015528.3(RNF167):c.270C>G (p.Phe90Leu) single nucleotide variant Inborn genetic diseases [RCV003202275] Chr17:4942445 [GRCh38]
Chr17:4845740 [GRCh37]
Chr17:17p13.2
uncertain significance
NM_015528.3(RNF167):c.476G>A (p.Arg159Gln) single nucleotide variant Inborn genetic diseases [RCV003196393] Chr17:4943184 [GRCh38]
Chr17:4846479 [GRCh37]
Chr17:17p13.2
uncertain significance
NM_015528.3(RNF167):c.230C>T (p.Pro77Leu) single nucleotide variant Inborn genetic diseases [RCV003308905] Chr17:4942405 [GRCh38]
Chr17:4845700 [GRCh37]
Chr17:17p13.2
uncertain significance
GRCh38/hg38 17p13.3-12(chr17:165730-11404096)x3 copy number gain Chromosome 17p13.3 duplication syndrome [RCV003327726] Chr17:165730..11404096 [GRCh38]
Chr17:17p13.3-12
pathogenic
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:4365
Count of miRNA genes:891
Interacting mature miRNAs:1091
Transcripts:ENST00000262482, ENST00000570328, ENST00000570492, ENST00000571365, ENST00000571816, ENST00000572382, ENST00000572430, ENST00000572554, ENST00000573404, ENST00000574548, ENST00000575111, ENST00000575400, ENST00000575524, ENST00000576229, ENST00000576452, ENST00000576965
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
RH12586  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37174,848,219 - 4,848,388UniSTSGRCh37
Build 36174,788,964 - 4,789,133RGDNCBI36
Celera174,863,030 - 4,863,199RGD
Cytogenetic Map17p13.2UniSTS
HuRef174,735,809 - 4,735,978UniSTS
RNF167_9446  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37174,848,042 - 4,848,626UniSTSGRCh37
Build 36174,788,787 - 4,789,371RGDNCBI36
Celera174,862,853 - 4,863,437RGD
HuRef174,735,632 - 4,736,216UniSTS
MARC_14421-14422:1010075686:1  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37174,846,162 - 4,846,539UniSTSGRCh37
Build 36174,786,907 - 4,787,284RGDNCBI36
Celera174,860,973 - 4,861,350RGD
HuRef174,733,752 - 4,734,129UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High 1
Medium 2431 2967 1723 622 1946 464 4355 2178 3706 417 1447 1608 171 1204 2788 4
Low 8 24 3 2 5 1 2 19 26 2 12 5 4 1 2 2
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001320356 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001320357 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001320358 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001320359 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001320360 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001320361 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001320362 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001320363 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001320364 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001320365 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001370303 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001370304 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001370305 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001370306 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001370307 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001370308 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001370311 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001370313 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001375485 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_015528 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017024428 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047435730 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054315675 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054315676 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AA378194 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC004771 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC109333 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI350817 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK025329 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL050060 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL079315 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL521425 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL537131 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL834284 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY203930 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY960626 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC010139 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC013222 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BI825561 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BI830686 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BM711257 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB150714 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471108 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068261 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CR457340 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CX762549 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DB055876 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HY016013 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HY066967 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HY068018 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENST00000262482   ⟹   ENSP00000262482
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl174,940,268 - 4,945,222 (+)Ensembl
RefSeq Acc Id: ENST00000570328   ⟹   ENSP00000458905
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl174,940,299 - 4,942,605 (+)Ensembl
RefSeq Acc Id: ENST00000570492
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl174,940,658 - 4,944,601 (+)Ensembl
RefSeq Acc Id: ENST00000571365
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl174,940,046 - 4,940,836 (+)Ensembl
RefSeq Acc Id: ENST00000571816   ⟹   ENSP00000459324
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl174,940,008 - 4,945,191 (+)Ensembl
RefSeq Acc Id: ENST00000572382   ⟹   ENSP00000460024
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl174,942,619 - 4,945,209 (+)Ensembl
RefSeq Acc Id: ENST00000572430   ⟹   ENSP00000458794
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl174,940,120 - 4,945,170 (+)Ensembl
RefSeq Acc Id: ENST00000572554
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl174,940,976 - 4,943,038 (+)Ensembl
RefSeq Acc Id: ENST00000573404   ⟹   ENSP00000459581
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl174,940,083 - 4,942,652 (+)Ensembl
RefSeq Acc Id: ENST00000574548
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl174,944,380 - 4,944,895 (+)Ensembl
RefSeq Acc Id: ENST00000575111   ⟹   ENSP00000460190
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl174,940,381 - 4,945,191 (+)Ensembl
RefSeq Acc Id: ENST00000575400   ⟹   ENSP00000460991
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl174,940,659 - 4,944,851 (+)Ensembl
RefSeq Acc Id: ENST00000575524
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl174,943,068 - 4,944,800 (+)Ensembl
RefSeq Acc Id: ENST00000576229   ⟹   ENSP00000458189
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl174,940,487 - 4,945,172 (+)Ensembl
RefSeq Acc Id: ENST00000576452   ⟹   ENSP00000458375
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl174,940,100 - 4,942,466 (+)Ensembl
RefSeq Acc Id: ENST00000576965   ⟹   ENSP00000466753
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl174,942,851 - 4,945,222 (+)Ensembl
RefSeq Acc Id: NM_001320356   ⟹   NP_001307285
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38174,940,092 - 4,945,222 (+)NCBI
CHM1_1174,852,641 - 4,857,852 (+)NCBI
T2T-CHM13v2.0174,830,440 - 4,835,570 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001320357   ⟹   NP_001307286
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38174,940,268 - 4,945,222 (+)NCBI
CHM1_1174,852,641 - 4,857,852 (+)NCBI
T2T-CHM13v2.0174,830,616 - 4,835,570 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001320358   ⟹   NP_001307287
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38174,940,092 - 4,945,222 (+)NCBI
CHM1_1174,852,641 - 4,857,852 (+)NCBI
T2T-CHM13v2.0174,830,440 - 4,835,570 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001320359   ⟹   NP_001307288
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38174,940,092 - 4,945,222 (+)NCBI
CHM1_1174,852,641 - 4,857,852 (+)NCBI
T2T-CHM13v2.0174,830,440 - 4,835,570 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001320360   ⟹   NP_001307289
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38174,940,092 - 4,945,222 (+)NCBI
CHM1_1174,852,641 - 4,857,852 (+)NCBI
T2T-CHM13v2.0174,830,440 - 4,835,570 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001320361   ⟹   NP_001307290
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38174,940,268 - 4,945,222 (+)NCBI
CHM1_1174,852,641 - 4,857,852 (+)NCBI
T2T-CHM13v2.0174,830,616 - 4,835,570 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001320362   ⟹   NP_001307291
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38174,940,092 - 4,945,222 (+)NCBI
CHM1_1174,852,641 - 4,857,852 (+)NCBI
T2T-CHM13v2.0174,830,440 - 4,835,570 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001320363   ⟹   NP_001307292
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38174,940,268 - 4,945,222 (+)NCBI
CHM1_1174,852,641 - 4,857,852 (+)NCBI
T2T-CHM13v2.0174,830,616 - 4,835,570 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001320364   ⟹   NP_001307293
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38174,940,268 - 4,945,222 (+)NCBI
CHM1_1174,852,641 - 4,857,852 (+)NCBI
T2T-CHM13v2.0174,830,616 - 4,835,570 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001320365   ⟹   NP_001307294
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38174,940,268 - 4,945,222 (+)NCBI
CHM1_1174,852,641 - 4,857,852 (+)NCBI
T2T-CHM13v2.0174,830,616 - 4,835,570 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001370303   ⟹   NP_001357232
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38174,940,092 - 4,945,222 (+)NCBI
T2T-CHM13v2.0174,830,440 - 4,835,570 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001370304   ⟹   NP_001357233
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38174,940,268 - 4,945,222 (+)NCBI
T2T-CHM13v2.0174,830,616 - 4,835,570 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001370305   ⟹   NP_001357234
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38174,940,092 - 4,945,222 (+)NCBI
T2T-CHM13v2.0174,830,440 - 4,835,570 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001370306   ⟹   NP_001357235
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38174,940,092 - 4,945,222 (+)NCBI
T2T-CHM13v2.0174,830,440 - 4,835,570 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001370307   ⟹   NP_001357236
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38174,940,268 - 4,945,222 (+)NCBI
T2T-CHM13v2.0174,830,616 - 4,835,570 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001370308   ⟹   NP_001357237
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38174,940,268 - 4,945,222 (+)NCBI
T2T-CHM13v2.0174,830,616 - 4,835,570 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001370311   ⟹   NP_001357240
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38174,940,092 - 4,945,222 (+)NCBI
T2T-CHM13v2.0174,830,440 - 4,835,570 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001370313   ⟹   NP_001357242
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38174,940,268 - 4,945,222 (+)NCBI
T2T-CHM13v2.0174,830,616 - 4,835,570 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001375485   ⟹   NP_001362414
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38174,940,092 - 4,945,222 (+)NCBI
T2T-CHM13v2.0174,830,440 - 4,835,570 (+)NCBI
Sequence:
RefSeq Acc Id: NM_015528   ⟹   NP_056343
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38174,940,268 - 4,945,222 (+)NCBI
GRCh37174,843,328 - 4,848,517 (+)NCBI
Build 36174,784,375 - 4,789,262 (+)NCBI Archive
Celera174,858,441 - 4,863,328 (+)RGD
HuRef174,731,220 - 4,736,107 (+)RGD
CHM1_1174,852,641 - 4,857,852 (+)NCBI
T2T-CHM13v2.0174,830,616 - 4,835,570 (+)NCBI
Sequence:
RefSeq Acc Id: XM_047435730   ⟹   XP_047291686
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38174,940,268 - 4,945,222 (+)NCBI
RefSeq Acc Id: XM_054315675   ⟹   XP_054171650
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0174,830,696 - 4,835,570 (+)NCBI
RefSeq Acc Id: XM_054315676   ⟹   XP_054171651
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0174,830,616 - 4,835,570 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001307285 (Get FASTA)   NCBI Sequence Viewer  
  NP_001307286 (Get FASTA)   NCBI Sequence Viewer  
  NP_001307287 (Get FASTA)   NCBI Sequence Viewer  
  NP_001307288 (Get FASTA)   NCBI Sequence Viewer  
  NP_001307289 (Get FASTA)   NCBI Sequence Viewer  
  NP_001307290 (Get FASTA)   NCBI Sequence Viewer  
  NP_001307291 (Get FASTA)   NCBI Sequence Viewer  
  NP_001307292 (Get FASTA)   NCBI Sequence Viewer  
  NP_001307293 (Get FASTA)   NCBI Sequence Viewer  
  NP_001307294 (Get FASTA)   NCBI Sequence Viewer  
  NP_001357232 (Get FASTA)   NCBI Sequence Viewer  
  NP_001357233 (Get FASTA)   NCBI Sequence Viewer  
  NP_001357234 (Get FASTA)   NCBI Sequence Viewer  
  NP_001357235 (Get FASTA)   NCBI Sequence Viewer  
  NP_001357236 (Get FASTA)   NCBI Sequence Viewer  
  NP_001357237 (Get FASTA)   NCBI Sequence Viewer  
  NP_001357240 (Get FASTA)   NCBI Sequence Viewer  
  NP_001357242 (Get FASTA)   NCBI Sequence Viewer  
  NP_001362414 (Get FASTA)   NCBI Sequence Viewer  
  NP_056343 (Get FASTA)   NCBI Sequence Viewer  
  XP_047291686 (Get FASTA)   NCBI Sequence Viewer  
  XP_054171650 (Get FASTA)   NCBI Sequence Viewer  
  XP_054171651 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH10139 (Get FASTA)   NCBI Sequence Viewer  
  AAP34453 (Get FASTA)   NCBI Sequence Viewer  
  BAB15113 (Get FASTA)   NCBI Sequence Viewer  
  CAB43253 (Get FASTA)   NCBI Sequence Viewer  
  CAB45281 (Get FASTA)   NCBI Sequence Viewer  
  CAD38958 (Get FASTA)   NCBI Sequence Viewer  
  CAG33621 (Get FASTA)   NCBI Sequence Viewer  
  EAW90385 (Get FASTA)   NCBI Sequence Viewer  
  EAW90386 (Get FASTA)   NCBI Sequence Viewer  
  EAW90387 (Get FASTA)   NCBI Sequence Viewer  
  EAW90388 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSP00000262482
  ENSP00000262482.6
  ENSP00000458189
  ENSP00000458189.1
  ENSP00000458375.1
  ENSP00000458794
  ENSP00000458794.1
  ENSP00000458905.1
  ENSP00000459324
  ENSP00000459324.1
  ENSP00000459581.1
  ENSP00000460024.1
  ENSP00000460190
  ENSP00000460190.1
  ENSP00000460991.1
  ENSP00000466753.1
GenBank Protein Q9H6Y7 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_056343   ⟸   NM_015528
- Peptide Label: isoform a precursor
- UniProtKB: Q8NDC1 (UniProtKB/Swiss-Prot),   Q6XYE0 (UniProtKB/Swiss-Prot),   I3L0L6 (UniProtKB/Swiss-Prot),   D3DTK8 (UniProtKB/Swiss-Prot),   Q9Y3V1 (UniProtKB/Swiss-Prot),   Q9H6Y7 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001307290   ⟸   NM_001320361
- Peptide Label: isoform a precursor
- UniProtKB: Q8NDC1 (UniProtKB/Swiss-Prot),   Q6XYE0 (UniProtKB/Swiss-Prot),   I3L0L6 (UniProtKB/Swiss-Prot),   D3DTK8 (UniProtKB/Swiss-Prot),   Q9Y3V1 (UniProtKB/Swiss-Prot),   Q9H6Y7 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001307294   ⟸   NM_001320365
- Peptide Label: isoform b
- UniProtKB: Q9H6Y7 (UniProtKB/Swiss-Prot),   I3L0L6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001307286   ⟸   NM_001320357
- Peptide Label: isoform a precursor
- UniProtKB: Q8NDC1 (UniProtKB/Swiss-Prot),   Q6XYE0 (UniProtKB/Swiss-Prot),   I3L0L6 (UniProtKB/Swiss-Prot),   D3DTK8 (UniProtKB/Swiss-Prot),   Q9Y3V1 (UniProtKB/Swiss-Prot),   Q9H6Y7 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001307292   ⟸   NM_001320363
- Peptide Label: isoform b
- UniProtKB: Q9H6Y7 (UniProtKB/Swiss-Prot),   I3L0L6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001307293   ⟸   NM_001320364
- Peptide Label: isoform b
- UniProtKB: Q9H6Y7 (UniProtKB/Swiss-Prot),   I3L0L6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001307289   ⟸   NM_001320360
- Peptide Label: isoform a precursor
- UniProtKB: Q8NDC1 (UniProtKB/Swiss-Prot),   Q6XYE0 (UniProtKB/Swiss-Prot),   I3L0L6 (UniProtKB/Swiss-Prot),   D3DTK8 (UniProtKB/Swiss-Prot),   Q9Y3V1 (UniProtKB/Swiss-Prot),   Q9H6Y7 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001307285   ⟸   NM_001320356
- Peptide Label: isoform a precursor
- UniProtKB: Q8NDC1 (UniProtKB/Swiss-Prot),   Q6XYE0 (UniProtKB/Swiss-Prot),   I3L0L6 (UniProtKB/Swiss-Prot),   D3DTK8 (UniProtKB/Swiss-Prot),   Q9Y3V1 (UniProtKB/Swiss-Prot),   Q9H6Y7 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001307288   ⟸   NM_001320359
- Peptide Label: isoform a precursor
- UniProtKB: Q8NDC1 (UniProtKB/Swiss-Prot),   Q6XYE0 (UniProtKB/Swiss-Prot),   I3L0L6 (UniProtKB/Swiss-Prot),   D3DTK8 (UniProtKB/Swiss-Prot),   Q9Y3V1 (UniProtKB/Swiss-Prot),   Q9H6Y7 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001307287   ⟸   NM_001320358
- Peptide Label: isoform a precursor
- UniProtKB: Q8NDC1 (UniProtKB/Swiss-Prot),   Q6XYE0 (UniProtKB/Swiss-Prot),   I3L0L6 (UniProtKB/Swiss-Prot),   D3DTK8 (UniProtKB/Swiss-Prot),   Q9Y3V1 (UniProtKB/Swiss-Prot),   Q9H6Y7 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001307291   ⟸   NM_001320362
- Peptide Label: isoform b
- UniProtKB: Q9H6Y7 (UniProtKB/Swiss-Prot),   I3L0L6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001357234   ⟸   NM_001370305
- Peptide Label: isoform a precursor
- UniProtKB: Q9H6Y7 (UniProtKB/Swiss-Prot),   Q8NDC1 (UniProtKB/Swiss-Prot),   Q6XYE0 (UniProtKB/Swiss-Prot),   I3L0L6 (UniProtKB/Swiss-Prot),   D3DTK8 (UniProtKB/Swiss-Prot),   Q9Y3V1 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001357232   ⟸   NM_001370303
- Peptide Label: isoform c precursor
RefSeq Acc Id: NP_001357235   ⟸   NM_001370306
- Peptide Label: isoform d precursor
RefSeq Acc Id: NP_001357240   ⟸   NM_001370311
- Peptide Label: isoform b
RefSeq Acc Id: NP_001357236   ⟸   NM_001370307
- Peptide Label: isoform d precursor
RefSeq Acc Id: NP_001357242   ⟸   NM_001370313
- Peptide Label: isoform f precursor
RefSeq Acc Id: NP_001357233   ⟸   NM_001370304
- Peptide Label: isoform c precursor
RefSeq Acc Id: NP_001357237   ⟸   NM_001370308
- Peptide Label: isoform e
RefSeq Acc Id: NP_001362414   ⟸   NM_001375485
- Peptide Label: isoform a precursor
- UniProtKB: Q9H6Y7 (UniProtKB/Swiss-Prot),   Q8NDC1 (UniProtKB/Swiss-Prot),   Q6XYE0 (UniProtKB/Swiss-Prot),   I3L0L6 (UniProtKB/Swiss-Prot),   D3DTK8 (UniProtKB/Swiss-Prot),   Q9Y3V1 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: ENSP00000458905   ⟸   ENST00000570328
RefSeq Acc Id: ENSP00000459324   ⟸   ENST00000571816
RefSeq Acc Id: ENSP00000458794   ⟸   ENST00000572430
RefSeq Acc Id: ENSP00000460024   ⟸   ENST00000572382
RefSeq Acc Id: ENSP00000459581   ⟸   ENST00000573404
RefSeq Acc Id: ENSP00000460190   ⟸   ENST00000575111
RefSeq Acc Id: ENSP00000460991   ⟸   ENST00000575400
RefSeq Acc Id: ENSP00000458375   ⟸   ENST00000576452
RefSeq Acc Id: ENSP00000458189   ⟸   ENST00000576229
RefSeq Acc Id: ENSP00000466753   ⟸   ENST00000576965
RefSeq Acc Id: ENSP00000262482   ⟸   ENST00000262482
RefSeq Acc Id: XP_047291686   ⟸   XM_047435730
- Peptide Label: isoform X1
RefSeq Acc Id: XP_054171651   ⟸   XM_054315676
- Peptide Label: isoform X1
RefSeq Acc Id: XP_054171650   ⟸   XM_054315675
- Peptide Label: isoform X2
- UniProtKB: Q9H6Y7 (UniProtKB/Swiss-Prot),   Q8NDC1 (UniProtKB/Swiss-Prot),   Q6XYE0 (UniProtKB/Swiss-Prot),   I3L0L6 (UniProtKB/Swiss-Prot),   D3DTK8 (UniProtKB/Swiss-Prot),   Q9Y3V1 (UniProtKB/Swiss-Prot)
Protein Domains
PA   RING-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9H6Y7-F1-model_v2 AlphaFold Q9H6Y7 1-350 view protein structure

Promoters
RGD ID:6794493
Promoter ID:HG_KWN:24760
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   HeLa_S3,   Jurkat,   K562,   Lymphoblastoid,   NB4
Transcripts:OTTHUMT00000216854,   UC002FZQ.1,   UC002FZR.1,   UC002FZT.1,   UC002FZU.1,   UC002FZV.1,   UC002FZW.1
Position:
Human AssemblyChrPosition (strand)Source
Build 36174,784,336 - 4,784,977 (+)MPROMDB
RGD ID:6793945
Promoter ID:HG_KWN:24761
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   K562,   Lymphoblastoid
Transcripts:UC002FZY.2
Position:
Human AssemblyChrPosition (strand)Source
Build 36174,786,501 - 4,787,562 (+)MPROMDB
RGD ID:7233481
Promoter ID:EPDNEW_H22486
Type:initiation region
Name:RNF167_3
Description:ring finger protein 167
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H22488  EPDNEW_H22489  EPDNEW_H22487  
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38174,940,092 - 4,940,152EPDNEW
RGD ID:7233489
Promoter ID:EPDNEW_H22487
Type:initiation region
Name:RNF167_1
Description:ring finger protein 167
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H22486  EPDNEW_H22488  EPDNEW_H22489  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38174,940,332 - 4,940,392EPDNEW
RGD ID:7233483
Promoter ID:EPDNEW_H22488
Type:initiation region
Name:RNF167_2
Description:ring finger protein 167
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H22486  EPDNEW_H22489  EPDNEW_H22487  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38174,940,597 - 4,940,657EPDNEW
RGD ID:7233485
Promoter ID:EPDNEW_H22489
Type:initiation region
Name:RNF167_4
Description:ring finger protein 167
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H22486  EPDNEW_H22488  EPDNEW_H22487  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38174,941,069 - 4,941,129EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:24544 AgrOrtholog
COSMIC RNF167 COSMIC
Ensembl Genes ENSG00000108523 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000262482 ENTREZGENE
  ENST00000262482.11 UniProtKB/Swiss-Prot
  ENST00000570328.5 UniProtKB/TrEMBL
  ENST00000571816 ENTREZGENE
  ENST00000571816.5 UniProtKB/Swiss-Prot
  ENST00000572382.5 UniProtKB/TrEMBL
  ENST00000572430 ENTREZGENE
  ENST00000572430.5 UniProtKB/Swiss-Prot
  ENST00000573404.5 UniProtKB/TrEMBL
  ENST00000575111 ENTREZGENE
  ENST00000575111.5 UniProtKB/Swiss-Prot
  ENST00000575400.5 UniProtKB/TrEMBL
  ENST00000576229 ENTREZGENE
  ENST00000576229.5 UniProtKB/Swiss-Prot
  ENST00000576452.5 UniProtKB/TrEMBL
  ENST00000576965.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.50.30.30 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000108523 GTEx
HGNC ID HGNC:24544 ENTREZGENE
Human Proteome Map RNF167 Human Proteome Map
InterPro PA_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PA_domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_RING UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_RING-CH UniProtKB/Swiss-Prot
  Znf_RING/FYVE/PHD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZNRF4/RNF13/RNF167_PA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:26001 UniProtKB/Swiss-Prot
NCBI Gene 26001 ENTREZGENE
OMIM 610431 OMIM
PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF6 UniProtKB/Swiss-Prot
  RING-TYPE DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
  SI:CH211-59O9.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam PF02225 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  zf-RING_11 UniProtKB/TrEMBL
  zf-RING_2 UniProtKB/Swiss-Prot
PharmGKB PA134953711 PharmGKB
PROSITE ZF_RING_2 UniProtKB/Swiss-Prot
SMART RING UniProtKB/Swiss-Prot
  RINGv UniProtKB/Swiss-Prot
Superfamily-SCOP PA domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RING/U-box UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt D3DTK8 ENTREZGENE
  I3L0L6 ENTREZGENE
  I3L0V7_HUMAN UniProtKB/TrEMBL
  I3L1K4_HUMAN UniProtKB/TrEMBL
  I3L2D4_HUMAN UniProtKB/TrEMBL
  I3L2Y3_HUMAN UniProtKB/TrEMBL
  I3L462_HUMAN UniProtKB/TrEMBL
  K7EN24_HUMAN UniProtKB/TrEMBL
  Q6XYE0 ENTREZGENE
  Q8NDC1 ENTREZGENE
  Q9H6Y7 ENTREZGENE
  Q9Y3V1 ENTREZGENE
  RN167_HUMAN UniProtKB/Swiss-Prot
UniProt Secondary D3DTK8 UniProtKB/Swiss-Prot
  I3L0L6 UniProtKB/Swiss-Prot
  Q6XYE0 UniProtKB/Swiss-Prot
  Q8NDC1 UniProtKB/Swiss-Prot
  Q9Y3V1 UniProtKB/Swiss-Prot