TRIM16 (tripartite motif containing 16) - Rat Genome Database

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Gene: TRIM16 (tripartite motif containing 16) Homo sapiens
Analyze
Symbol: TRIM16
Name: tripartite motif containing 16
RGD ID: 1348776
HGNC Page HGNC:17241
Description: Enables DNA binding activity; NACHT domain binding activity; and interleukin-1 binding activity. Involved in several processes, including positive regulation of keratinocyte differentiation; positive regulation of macromolecule biosynthetic process; and positive regulation of retinoic acid receptor signaling pathway. Located in PML body; cytosol; and plasma membrane.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: DKFZp434O1826; E3 ubiquitin-protein ligase TRIM16; EBBP; estrogen-responsive B box protein; tripartite motif-containing 16; tripartite motif-containing protein 16
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381715,627,966 - 15,684,311 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1715,627,960 - 15,684,311 (-)EnsemblGRCh38hg38GRCh38
GRCh371715,531,280 - 15,587,625 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361715,472,005 - 15,526,918 (-)NCBINCBI36Build 36hg18NCBI36
Build 341715,472,005 - 15,526,918NCBI
Cytogenetic Map17p12NCBI
HuRef1715,404,775 - 15,461,210 (-)NCBIHuRef
CHM1_11715,540,352 - 15,595,047 (-)NCBICHM1_1
T2T-CHM13v2.01715,534,188 - 15,590,551 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (EXP)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,6-tribromophenol  (EXP)
2,4,6-trinitrobenzenesulfonic acid  (EXP)
3,3',5,5'-tetrabromobisphenol A  (EXP)
3-phenylprop-2-enal  (EXP)
acrylamide  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (EXP,ISO)
ampicillin  (EXP)
antirheumatic drug  (EXP)
aristolochic acid A  (EXP)
Aroclor 1254  (EXP)
arsenous acid  (EXP)
benzo[a]pyrene  (EXP,ISO)
benzo[b]fluoranthene  (ISO)
benzylpenicillin  (EXP)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
C60 fullerene  (ISO)
cadmium atom  (EXP)
cadmium dichloride  (EXP,ISO)
calcitriol  (EXP)
carbon nanotube  (ISO)
choline  (ISO)
chromium(6+)  (EXP)
cobalt dichloride  (EXP,ISO)
copper atom  (EXP,ISO)
copper(0)  (EXP,ISO)
curcumin  (EXP)
decabromodiphenyl ether  (EXP,ISO)
diarsenic trioxide  (EXP)
dibenz[a,h]anthracene  (ISO)
dioxygen  (ISO)
diquat  (EXP)
ethanol  (ISO)
fenvalerate  (ISO)
folic acid  (ISO)
fulvestrant  (EXP)
furan  (ISO)
genistein  (EXP)
gentamycin  (ISO)
indometacin  (EXP)
isoeugenol  (EXP)
ivermectin  (EXP)
L-methionine  (ISO)
lead(0)  (EXP)
N,N-diethyl-m-toluamide  (ISO)
nickel atom  (EXP)
nickel sulfate  (EXP)
ozone  (ISO)
paracetamol  (ISO)
paraquat  (ISO)
permethrin  (ISO)
phenoxymethylpenicillin  (EXP)
progesterone  (EXP)
S-(1,2-dichlorovinyl)-L-cysteine  (EXP)
silicon dioxide  (EXP,ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenate  (EXP)
sodium arsenite  (EXP,ISO)
succimer  (ISO)
sulforaphane  (EXP)
testosterone enanthate  (EXP)
tetrachloromethane  (ISO)
thioacetamide  (ISO)
titanium dioxide  (ISO)
trans-isoeugenol  (EXP)
vanillin  (EXP)
zoledronic acid  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IDA,IEA)
cytosol  (IDA)
plasma membrane  (IDA)
PML body  (IDA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:9817599   PMID:11331580   PMID:11919186   PMID:12477932   PMID:14702039   PMID:15302935   PMID:15489334   PMID:16079077   PMID:16169070   PMID:16344560   PMID:16575408   PMID:16636064  
PMID:18029348   PMID:19147277   PMID:20729920   PMID:21044950   PMID:21832049   PMID:22629402   PMID:22658674   PMID:22863883   PMID:23404198   PMID:23422002   PMID:25127057   PMID:25333256  
PMID:25843803   PMID:25866896   PMID:26186194   PMID:26496610   PMID:26718507   PMID:26902425   PMID:27693506   PMID:27737724   PMID:27932448   PMID:28514442   PMID:29295721   PMID:30143514  
PMID:30488195   PMID:31521826   PMID:31812473   PMID:32694731   PMID:33046716   PMID:33111431   PMID:33391467   PMID:33845483   PMID:33961781   PMID:34135057   PMID:34265287   PMID:34452557  
PMID:34978663   PMID:35156780   PMID:35230201   PMID:35831314   PMID:35906200   PMID:36180926   PMID:36215168   PMID:36736316   PMID:36811957   PMID:37477507   PMID:38581570  


Genomics

Comparative Map Data
TRIM16
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381715,627,966 - 15,684,311 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1715,627,960 - 15,684,311 (-)EnsemblGRCh38hg38GRCh38
GRCh371715,531,280 - 15,587,625 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361715,472,005 - 15,526,918 (-)NCBINCBI36Build 36hg18NCBI36
Build 341715,472,005 - 15,526,918NCBI
Cytogenetic Map17p12NCBI
HuRef1715,404,775 - 15,461,210 (-)NCBIHuRef
CHM1_11715,540,352 - 15,595,047 (-)NCBICHM1_1
T2T-CHM13v2.01715,534,188 - 15,590,551 (-)NCBIT2T-CHM13v2.0
Trim16
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391162,711,034 - 62,733,774 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1162,711,057 - 62,741,634 (+)EnsemblGRCm39 Ensembl
GRCm381162,820,198 - 62,842,948 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1162,820,231 - 62,850,808 (+)EnsemblGRCm38mm10GRCm38
MGSCv371162,633,755 - 62,656,450 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361162,636,448 - 62,659,143 (+)NCBIMGSCv36mm8
Celera1169,742,229 - 69,768,302 (+)NCBICelera
Cytogenetic Map11B2NCBI
cM Map1138.75NCBI
Trim16
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81047,985,235 - 48,008,242 (+)NCBIGRCr8
mRatBN7.21047,485,982 - 47,509,010 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1047,486,297 - 47,551,907 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1052,189,625 - 52,212,030 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01051,680,165 - 51,702,570 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01047,183,586 - 47,205,991 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01049,231,660 - 49,254,653 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1049,231,730 - 49,254,621 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01049,011,305 - 49,033,997 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41048,987,004 - 49,009,696 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11049,000,664 - 49,021,215 (+)NCBI
Celera1046,731,462 - 46,754,204 (+)NCBICelera
Cytogenetic Map10q23NCBI
Trim16
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554672,059,777 - 2,085,206 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554672,059,793 - 2,084,221 (+)NCBIChiLan1.0ChiLan1.0
TRIM16
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21958,070,809 - 58,127,342 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11762,877,474 - 62,934,040 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01735,973,775 - 36,028,767 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
TRIM16
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1539,146,505 - 39,167,857 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl539,148,868 - 39,213,203 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha539,291,568 - 39,312,872 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0539,254,975 - 39,276,316 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl539,254,781 - 39,321,526 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1539,227,812 - 39,249,105 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0539,173,103 - 39,194,393 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0539,361,457 - 39,382,765 (-)NCBIUU_Cfam_GSD_1.0
Trim16
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560258,132,028 - 58,170,647 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367242,088,370 - 2,122,170 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367242,101,942 - 2,122,747 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TRIM16
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1258,926,086 - 58,939,745 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11258,926,083 - 58,940,642 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
TRIM16
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11614,874,159 - 14,897,958 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1614,871,657 - 14,897,865 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660596,251,363 - 6,307,941 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Trim16
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248773,672,925 - 3,713,783 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248773,688,635 - 3,713,718 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in TRIM16
25 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 17p12-11.2(chr17:15259164-20925299)x3 copy number gain See cases [RCV000051852] Chr17:15259164..20925299 [GRCh38]
Chr17:15162481..20828612 [GRCh37]
Chr17:15103206..20769204 [NCBI36]
Chr17:17p12-11.2		 pathogenic
GRCh38/hg38 17p12(chr17:14126296-15659587)x3 copy number gain See cases [RCV000051843] Chr17:14126296..15659587 [GRCh38]
Chr17:14029613..15562901 [GRCh37]
Chr17:13970338..15503626 [NCBI36]
Chr17:17p12		 pathogenic
GRCh38/hg38 17p12-11.2(chr17:15234685-20620700)x3 copy number gain See cases [RCV000051849] Chr17:15234685..20620700 [GRCh38]
Chr17:15138002..20524013 [GRCh37]
Chr17:15078727..20464605 [NCBI36]
Chr17:17p12-11.2		 pathogenic
GRCh38/hg38 17p12-11.2(chr17:10892259-17964282)x3 copy number gain See cases [RCV000052476] Chr17:10892259..17964282 [GRCh38]
Chr17:10795576..17867596 [GRCh37]
Chr17:10736301..17808321 [NCBI36]
Chr17:17p12-11.2		 pathogenic
NM_006470.3(TRIM16):c.1516C>T (p.Leu506Phe) single nucleotide variant Malignant melanoma [RCV000071348] Chr17:15628794 [GRCh38]
Chr17:15532108 [GRCh37]
Chr17:15472833 [NCBI36]
Chr17:17p12		 not provided
GRCh38/hg38 17p12-11.2(chr17:15210400-18280816)x3 copy number gain See cases [RCV000137171] Chr17:15210400..18280816 [GRCh38]
Chr17:15113717..18184130 [GRCh37]
Chr17:15054442..18124855 [NCBI36]
Chr17:17p12-11.2		 pathogenic|likely pathogenic
GRCh38/hg38 17p12(chr17:14671118-15952996)x1 copy number loss See cases [RCV000137782] Chr17:14671118..15952996 [GRCh38]
Chr17:14574435..15856310 [GRCh37]
Chr17:14515160..15797035 [NCBI36]
Chr17:17p12		 pathogenic
GRCh38/hg38 17p12(chr17:15190283-15952996)x3 copy number gain See cases [RCV000139242] Chr17:15190283..15952996 [GRCh38]
Chr17:15093600..15856310 [GRCh37]
Chr17:15034325..15797035 [NCBI36]
Chr17:17p12		 pathogenic
GRCh38/hg38 17p12(chr17:14179737-15664355)x3 copy number gain See cases [RCV000142324] Chr17:14179737..15664355 [GRCh38]
Chr17:14083054..15567669 [GRCh37]
Chr17:14023779..15508394 [NCBI36]
Chr17:17p12		 pathogenic
GRCh38/hg38 17p12(chr17:15140036-15708439)x3 copy number gain See cases [RCV000142461] Chr17:15140036..15708439 [GRCh38]
Chr17:15043353..15611753 [GRCh37]
Chr17:14984078..15552478 [NCBI36]
Chr17:17p12		 uncertain significance
GRCh38/hg38 17p12-11.2(chr17:15552362-19014200)x3 copy number gain See cases [RCV000142169] Chr17:15552362..19014200 [GRCh38]
Chr17:15455676..18917513 [GRCh37]
Chr17:15396401..18858238 [NCBI36]
Chr17:17p12-11.2		 pathogenic
GRCh38/hg38 17p12-11.2(chr17:15066799-17472457)x1 copy number loss See cases [RCV000143046] Chr17:15066799..17472457 [GRCh38]
Chr17:14970116..17375771 [GRCh37]
Chr17:14910841..17316496 [NCBI36]
Chr17:17p12-11.2		 pathogenic
GRCh37/hg19 17p12(chr17:14139857-15707850)x3 copy number gain See cases [RCV000239776] Chr17:14139857..15707850 [GRCh37]
Chr17:17p12		 pathogenic
Single allele complex Breast ductal adenocarcinoma [RCV000207129] Chr17:9586165..16325968 [GRCh37]
Chr17:17p13.1-11.2		 uncertain significance
GRCh37/hg19 17p12(chr17:15339667-15592758)x3 copy number gain See cases [RCV000447335] Chr17:15339667..15592758 [GRCh37]
Chr17:17p12		 likely benign
GRCh37/hg19 17p12-11.2(chr17:10771948-21510992)x1 copy number loss See cases [RCV000447345] Chr17:10771948..21510992 [GRCh37]
Chr17:17p12-11.2		 pathogenic
GRCh37/hg19 17p13.3-q25.3(chr17:526-81041938) copy number gain See cases [RCV000511439] Chr17:526..81041938 [GRCh37]
Chr17:17p13.3-q25.3		 pathogenic
GRCh37/hg19 17p13.3-q25.3(chr17:526-81041938)x3 copy number gain See cases [RCV000512441] Chr17:526..81041938 [GRCh37]
Chr17:17p13.3-q25.3		 pathogenic
GRCh37/hg19 17p13.3-q25.3(chr17:7214-81058310)x3 copy number gain not provided [RCV000739320] Chr17:7214..81058310 [GRCh37]
Chr17:17p13.3-q25.3		 pathogenic
GRCh37/hg19 17p13.3-q25.3(chr17:12344-81057996)x3 copy number gain not provided [RCV000739325] Chr17:12344..81057996 [GRCh37]
Chr17:17p13.3-q25.3		 pathogenic
GRCh37/hg19 17p13.3-q25.3(chr17:8547-81060040)x3 copy number gain not provided [RCV000739324] Chr17:8547..81060040 [GRCh37]
Chr17:17p13.3-q25.3		 pathogenic
NM_001348119.1(TRIM16):c.1682G>T (p.Gly561Val) single nucleotide variant not provided [RCV000949595] Chr17:15628628 [GRCh38]
Chr17:15531942 [GRCh37]
Chr17:17p12		 benign
GRCh37/hg19 17p12(chr17:14105874-15611546) copy number gain Charcot-Marie-Tooth disease, type IA [RCV000767736] Chr17:14105874..15611546 [GRCh37]
Chr17:17p12		 pathogenic
GRCh37/hg19 17p12(chr17:14104012-15551814) copy number loss Hereditary liability to pressure palsies [RCV000767735] Chr17:14104012..15551814 [GRCh37]
Chr17:17p12		 pathogenic
NM_001348119.1(TRIM16):c.802G>A (p.Glu268Lys) single nucleotide variant Inborn genetic diseases [RCV003252885] Chr17:15636083 [GRCh38]
Chr17:15539397 [GRCh37]
Chr17:17p12		 uncertain significance
GRCh37/hg19 17p12(chr17:14195642-15545880)x3 copy number gain not provided [RCV001006872] Chr17:14195642..15545880 [GRCh37]
Chr17:17p12		 pathogenic
Single allele complex PMP22-RAI1 contiguous gene duplication syndrome [RCV002280690] Chr17:14876984..22124952 [GRCh37]
Chr17:17p12-11.2		 pathogenic
GRCh37/hg19 17p12-11.2(chr17:12524223-16047567)x1 copy number loss Hereditary liability to pressure palsies [RCV001825295] Chr17:12524223..16047567 [GRCh37]
Chr17:17p12-11.2		 not provided
Single allele duplication not specified [RCV002286369] Chr17:11915997..17892664 [GRCh38]
Chr17:17p12-11.2		 pathogenic
NM_001348119.1(TRIM16):c.1196C>A (p.Thr399Lys) single nucleotide variant Inborn genetic diseases [RCV002684216] Chr17:15629114 [GRCh38]
Chr17:15532428 [GRCh37]
Chr17:17p12		 uncertain significance
NM_001348119.1(TRIM16):c.133G>C (p.Val45Leu) single nucleotide variant Inborn genetic diseases [RCV002821649] Chr17:15651477 [GRCh38]
Chr17:15554791 [GRCh37]
Chr17:17p12		 uncertain significance
NM_001348119.1(TRIM16):c.569A>T (p.Asn190Ile) single nucleotide variant Inborn genetic diseases [RCV002708008] Chr17:15642767 [GRCh38]
Chr17:15546081 [GRCh37]
Chr17:17p12		 uncertain significance
NM_001348119.1(TRIM16):c.143C>T (p.Ser48Leu) single nucleotide variant Inborn genetic diseases [RCV003000531] Chr17:15651467 [GRCh38]
Chr17:15554781 [GRCh37]
Chr17:17p12		 likely benign
NM_001348119.1(TRIM16):c.797A>T (p.Lys266Met) single nucleotide variant Inborn genetic diseases [RCV002659731] Chr17:15636088 [GRCh38]
Chr17:15539402 [GRCh37]
Chr17:17p12		 uncertain significance
NM_001348119.1(TRIM16):c.1061A>G (p.Lys354Arg) single nucleotide variant Inborn genetic diseases [RCV002949771] Chr17:15631669 [GRCh38]
Chr17:15534983 [GRCh37]
Chr17:17p12		 uncertain significance
NM_001348119.1(TRIM16):c.1034C>T (p.Thr345Ile) single nucleotide variant Inborn genetic diseases [RCV002759996] Chr17:15631696 [GRCh38]
Chr17:15535010 [GRCh37]
Chr17:17p12		 uncertain significance
NM_001348119.1(TRIM16):c.255A>T (p.Arg85Ser) single nucleotide variant Inborn genetic diseases [RCV002702039] Chr17:15651355 [GRCh38]
Chr17:15554669 [GRCh37]
Chr17:17p12		 likely benign
NM_001348119.1(TRIM16):c.1183G>T (p.Val395Phe) single nucleotide variant Inborn genetic diseases [RCV002892722] Chr17:15629127 [GRCh38]
Chr17:15532441 [GRCh37]
Chr17:17p12		 uncertain significance
NM_001348119.1(TRIM16):c.959A>G (p.His320Arg) single nucleotide variant Inborn genetic diseases [RCV002666252] Chr17:15632565 [GRCh38]
Chr17:15535879 [GRCh37]
Chr17:17p12		 uncertain significance
NM_001348119.1(TRIM16):c.620C>T (p.Ser207Leu) single nucleotide variant Inborn genetic diseases [RCV002708473] Chr17:15636265 [GRCh38]
Chr17:15539579 [GRCh37]
Chr17:17p12		 uncertain significance
NM_001348119.1(TRIM16):c.721G>A (p.Glu241Lys) single nucleotide variant Inborn genetic diseases [RCV002874490] Chr17:15636164 [GRCh38]
Chr17:15539478 [GRCh37]
Chr17:17p12		 uncertain significance
NM_001348119.1(TRIM16):c.1322A>T (p.Tyr441Phe) single nucleotide variant Inborn genetic diseases [RCV002831989] Chr17:15628988 [GRCh38]
Chr17:15532302 [GRCh37]
Chr17:17p12		 uncertain significance
NM_001348119.1(TRIM16):c.947A>G (p.Glu316Gly) single nucleotide variant Inborn genetic diseases [RCV002940956] Chr17:15632577 [GRCh38]
Chr17:15535891 [GRCh37]
Chr17:17p12		 uncertain significance
NM_001348119.1(TRIM16):c.126A>T (p.Glu42Asp) single nucleotide variant Inborn genetic diseases [RCV002854723] Chr17:15651484 [GRCh38]
Chr17:15554798 [GRCh37]
Chr17:17p12		 uncertain significance
NM_001348119.1(TRIM16):c.761A>G (p.His254Arg) single nucleotide variant Inborn genetic diseases [RCV002832710] Chr17:15636124 [GRCh38]
Chr17:15539438 [GRCh37]
Chr17:17p12		 uncertain significance
NM_001348119.1(TRIM16):c.581T>C (p.Ile194Thr) single nucleotide variant Inborn genetic diseases [RCV002718003] Chr17:15642755 [GRCh38]
Chr17:15546069 [GRCh37]
Chr17:17p12		 uncertain significance
NM_001348119.1(TRIM16):c.1603T>C (p.Trp535Arg) single nucleotide variant Inborn genetic diseases [RCV003174138] Chr17:15628707 [GRCh38]
Chr17:15532021 [GRCh37]
Chr17:17p12		 uncertain significance
NM_001348119.1(TRIM16):c.133G>A (p.Val45Met) single nucleotide variant Inborn genetic diseases [RCV003344250] Chr17:15651477 [GRCh38]
Chr17:15554791 [GRCh37]
Chr17:17p12		 likely benign
NM_001348119.1(TRIM16):c.1478G>A (p.Arg493Gln) single nucleotide variant Inborn genetic diseases [RCV003373259] Chr17:15628832 [GRCh38]
Chr17:15532146 [GRCh37]
Chr17:17p12		 uncertain significance
NM_001348119.1(TRIM16):c.1246C>T (p.Arg416Trp) single nucleotide variant Inborn genetic diseases [RCV003368647] Chr17:15629064 [GRCh38]
Chr17:15532378 [GRCh37]
Chr17:17p12		 uncertain significance
NM_001348119.1(TRIM16):c.812G>C (p.Arg271Thr) single nucleotide variant not provided [RCV003428153] Chr17:15636073 [GRCh38]
Chr17:15539387 [GRCh37]
Chr17:17p12		 likely benign
GRCh37/hg19 17p13.3-11.2(chr17:525-21510992)x3 copy number gain not specified [RCV003987215] Chr17:525..21510992 [GRCh37]
Chr17:17p13.3-11.2		 pathogenic
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:4966
Count of miRNA genes:1173
Interacting mature miRNAs:1477
Transcripts:ENST00000336708, ENST00000416464, ENST00000460728, ENST00000473368, ENST00000473540, ENST00000473659, ENST00000494759, ENST00000577326, ENST00000577372, ENST00000577446, ENST00000577886, ENST00000578237, ENST00000578744, ENST00000579219, ENST00000579272, ENST00000579535, ENST00000579630, ENST00000579843, ENST00000580110, ENST00000580388, ENST00000581200, ENST00000581224, ENST00000582182, ENST00000582708, ENST00000584142
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
RH67196  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371718,639,140 - 18,639,292UniSTSGRCh37
GRCh371715,531,413 - 15,531,565UniSTSGRCh37
Build 361715,472,138 - 15,472,290RGDNCBI36
Cytogenetic Map17p11.2UniSTS
HuRef1715,404,908 - 15,405,060UniSTS
RH74977  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371718,602,168 - 18,602,408UniSTSGRCh37
GRCh371715,586,530 - 15,586,770UniSTSGRCh37
Build 361715,527,255 - 15,527,495RGDNCBI36
Cytogenetic Map17p11.2UniSTS
HuRef1715,461,547 - 15,461,787UniSTS
D8S2279  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map21q22.12UniSTS
Cytogenetic Map15q13UniSTS
Cytogenetic Map9q32UniSTS
Cytogenetic Map15q22.3UniSTS
Cytogenetic Map17p12UniSTS
Cytogenetic Map21q21.3UniSTS
Cytogenetic Map3p22-p21.3UniSTS
Cytogenetic Map1q21.1UniSTS
Cytogenetic Map2q24.2UniSTS
Cytogenetic Map17q24.2UniSTS
Cytogenetic Map1q32UniSTS
Cytogenetic Map3p25.3UniSTS
Cytogenetic Map20q13.3UniSTS
Cytogenetic Map2q31.1UniSTS
Cytogenetic Map1q21UniSTS
Cytogenetic Map3p14.1UniSTS
Cytogenetic Map2q37.3UniSTS
Cytogenetic Map7p14.1UniSTS
Cytogenetic Map2q22.3UniSTS
Cytogenetic Map15q13.2UniSTS
Cytogenetic Map12q24.1UniSTS
Cytogenetic Map7p15.2UniSTS
Cytogenetic Map5q31.2UniSTS
Cytogenetic Map2p25.2UniSTS
Cytogenetic Map3p24.3UniSTS
Cytogenetic Map17q25.3UniSTS
Cytogenetic Map15q22.31UniSTS
Cytogenetic Map5q14UniSTS
Cytogenetic Map5q31UniSTS
Cytogenetic Map1p36.32UniSTS
Cytogenetic Map1q42.12UniSTS
Cytogenetic Map7q21.11UniSTS
Cytogenetic Map9q34.2UniSTS
Cytogenetic Map19q13.3UniSTS
Cytogenetic Map22q13.33UniSTS
Cytogenetic Map8q22.3UniSTS
Cytogenetic Map6p21.1-p12UniSTS
Cytogenetic Map1p36.13UniSTS
Cytogenetic Map7q36.3UniSTS
Cytogenetic Map2p25.1UniSTS
Cytogenetic Map7p21.3UniSTS
Cytogenetic Map4q12UniSTS
Cytogenetic Map22q11.22UniSTS
Cytogenetic Map11p13UniSTS
Cytogenetic Map1q12UniSTS
Cytogenetic Map8p23UniSTS
Cytogenetic Map11q13.2-q13.3UniSTS
Cytogenetic Map13q14.1-q14.3UniSTS
Cytogenetic Map3q22-q24UniSTS
Cytogenetic Map3q13.1-q13.2UniSTS
Cytogenetic Map16q24UniSTS
Cytogenetic Map5q23.3-q31.1UniSTS
Cytogenetic Map8p21.3UniSTS
Cytogenetic Map14q32.3UniSTS
Cytogenetic Map7q11.23UniSTS
Cytogenetic Map7q32UniSTS
Cytogenetic Map14q32.33UniSTS
Cytogenetic Map19p13.2UniSTS
Cytogenetic Map9q34.3UniSTS
Cytogenetic Map1p32.3UniSTS
Cytogenetic Map17q11UniSTS
Cytogenetic Map17p13.1-p12UniSTS
Cytogenetic Map18q21.33UniSTS
Cytogenetic Map19p13.12UniSTS
Cytogenetic Map5q14.1UniSTS
Cytogenetic Map14q24.3UniSTS
Cytogenetic Map1q21-q23UniSTS
Cytogenetic MapXp11.23UniSTS
Cytogenetic Map4q21.1UniSTS
Cytogenetic Map12q13.13UniSTS
Cytogenetic Map14q23.3UniSTS
Cytogenetic Map17p12-p11.2UniSTS
Cytogenetic Map6p21.1UniSTS
Cytogenetic Map1q24UniSTS
Cytogenetic Map1q43UniSTS
Cytogenetic Map9q34.13UniSTS
Cytogenetic Map19q13.4UniSTS
Cytogenetic Map2q32UniSTS
Cytogenetic MapXp22.2UniSTS
Cytogenetic Map19p13.11UniSTS
Cytogenetic Map2q33UniSTS
Cytogenetic Map10p13UniSTS
Cytogenetic Map2q11.2UniSTS
Cytogenetic Map3q27UniSTS
Cytogenetic Map17q25.1UniSTS
Cytogenetic Map4p16.1UniSTS
Cytogenetic Map14q22.3UniSTS
Cytogenetic Map10q23-q24UniSTS
Cytogenetic Map2q37.1UniSTS
Cytogenetic Map17q12UniSTS
Cytogenetic Map14q31-q32UniSTS
Cytogenetic Map5p15.33UniSTS
Cytogenetic Map1q23.2UniSTS
Cytogenetic Map16q24.3UniSTS
Cytogenetic Map4p14UniSTS
Cytogenetic Map2q32.3UniSTS
Cytogenetic Map15q21.1UniSTS
Cytogenetic Map4q32.2UniSTS
Cytogenetic Map10q23UniSTS
Cytogenetic Map5q14.2UniSTS
Cytogenetic Map4q32.1UniSTS
Cytogenetic Map1q25.1UniSTS
Cytogenetic Map11q14.1UniSTS
Cytogenetic Map4p16.3UniSTS
Cytogenetic Map1p34.2UniSTS
Cytogenetic Map11q23.1UniSTS
Cytogenetic Map3p21.1UniSTS
Cytogenetic Map16q22.2UniSTS
Cytogenetic Map14q32.31UniSTS
Cytogenetic Map16q11.2UniSTS
Cytogenetic Map6q22UniSTS
Cytogenetic Map10p15.3UniSTS
Cytogenetic Map11q23UniSTS
Cytogenetic Map22q13.2UniSTS
Cytogenetic Map12q12UniSTS
Cytogenetic Map19q13.42UniSTS
Cytogenetic Map19q13.11UniSTS
Cytogenetic Map12q24.31UniSTS
Cytogenetic Map15q15UniSTS
Cytogenetic Map2q33.1UniSTS
Cytogenetic Map22q12.3UniSTS
Cytogenetic Map20q11UniSTS
Cytogenetic Map22q11.23UniSTS
Cytogenetic Map17q25UniSTS
Cytogenetic Map1p13.3UniSTS
Cytogenetic Map3p22.1UniSTS
Cytogenetic Map8q22.1UniSTS
Cytogenetic Map16q22.1UniSTS
Cytogenetic Map18p11.31UniSTS
Cytogenetic Map19p12UniSTS
Cytogenetic Map11q13.1UniSTS
Cytogenetic Map19p13.3UniSTS
Cytogenetic Map2p22.1UniSTS
Cytogenetic Map16p13.3UniSTS
Cytogenetic Map1p35.2UniSTS
Cytogenetic MapYp11.2UniSTS
Cytogenetic Map13q13.1UniSTS
Cytogenetic Map20q11.22UniSTS
Cytogenetic Map19q13.2UniSTS
Cytogenetic Map18q12UniSTS
Cytogenetic Map17q21.33UniSTS
Cytogenetic Map15q15.1UniSTS
Cytogenetic Map3q27.2UniSTS
Cytogenetic Map3q21.3UniSTS
Cytogenetic Map5p15.2UniSTS
Cytogenetic Map20q13.12UniSTS
Cytogenetic Map17q21UniSTS
Cytogenetic Map1q42UniSTS
Cytogenetic Map14q32.11UniSTS
Cytogenetic Map17q21.2-q21.3UniSTS
Cytogenetic Map5q32-q34UniSTS
Cytogenetic Map15q14UniSTS
Cytogenetic Map16q13UniSTS
Cytogenetic Map3q21.2UniSTS
Cytogenetic Map3p21.3UniSTS
Cytogenetic Map14q24.2UniSTS
Cytogenetic Map12q24.13UniSTS
Cytogenetic Map13q14.11UniSTS
Cytogenetic Map3q27.3UniSTS
Cytogenetic Map1q32.3UniSTS
Cytogenetic Map6p22.1UniSTS
Cytogenetic Map9q34.11UniSTS
Cytogenetic Map6q21UniSTS
Cytogenetic Map6q25.3UniSTS
Cytogenetic Map2p11.2UniSTS
Cytogenetic Map13q14.3UniSTS
Cytogenetic Map17q11.2UniSTS
Cytogenetic Map10p12UniSTS
Cytogenetic Map2q33.3UniSTS
Cytogenetic Map14q21.3UniSTS
Cytogenetic Map8p22-p21UniSTS
Cytogenetic Map18q11.2UniSTS
Cytogenetic Map2p15UniSTS
Cytogenetic Map17q22UniSTS
Cytogenetic Map12q21.33UniSTS
Cytogenetic Map20q13.32UniSTS
Cytogenetic Map1p34.1UniSTS
Cytogenetic Map10q26UniSTS
Cytogenetic Map8p23.1UniSTS
Cytogenetic Map19p13UniSTS
Cytogenetic Map7q21.13UniSTS
Cytogenetic Map7q31.1UniSTS
Cytogenetic Map1p33UniSTS
Cytogenetic Map21q22.3UniSTS
Cytogenetic Map1p35.1UniSTS
Cytogenetic Map22q12.2UniSTS
Cytogenetic Map9q22.3UniSTS
Cytogenetic Map8q13.1UniSTS
Cytogenetic Map3q25UniSTS
Cytogenetic Map1p36.33UniSTS
Cytogenetic Map20q13.33UniSTS
Cytogenetic Map1p31.3UniSTS
Cytogenetic Map14q31.1UniSTS
Cytogenetic Map22q13.1UniSTS
Cytogenetic Map12q13.2UniSTS
Cytogenetic Map22q13.31-q13.33UniSTS
Cytogenetic Map20q13.31UniSTS
Cytogenetic Map11p11.2UniSTS
Cytogenetic Map1q41UniSTS
Cytogenetic Map1p36.11UniSTS
Cytogenetic Map15q25.2UniSTS
Cytogenetic Map14q11.2UniSTS
Cytogenetic Map17q23.2UniSTS
Cytogenetic Map7q32.2UniSTS
Cytogenetic Map19q13.12UniSTS
Cytogenetic Map1q32.1UniSTS
Cytogenetic Map6q25.1UniSTS
Cytogenetic Map19q13.43UniSTS
Cytogenetic Map9p13.3UniSTS
Cytogenetic Map16p11.2UniSTS
Cytogenetic Map2p13.1UniSTS
Cytogenetic Map22q11.21UniSTS
Cytogenetic Map3q29UniSTS
Cytogenetic Map7p13UniSTS
Cytogenetic Map11q23.3UniSTS
Cytogenetic Map14q31-q32.1UniSTS
Cytogenetic Map1q42.11UniSTS
Cytogenetic Map4q35.1UniSTS
Cytogenetic Map2p23.3UniSTS
Cytogenetic Map2p13.3UniSTS
Cytogenetic MapXp11.3UniSTS
Cytogenetic Map2q11.2-q12.1UniSTS
Cytogenetic Map20q13.13UniSTS
Cytogenetic Map1p22UniSTS
Cytogenetic Map6q16.2UniSTS
Cytogenetic Map18q23UniSTS
Cytogenetic Map2q14UniSTS
Cytogenetic Map20p11.23-p11.21UniSTS
Cytogenetic Map16p12.2UniSTS
Cytogenetic Map8p11.23UniSTS
Cytogenetic Map19q13.1UniSTS
Cytogenetic Map19q13UniSTS
Cytogenetic Map8p11.21UniSTS
Cytogenetic Map12q14.3UniSTS
Cytogenetic MapXq26.3UniSTS
Cytogenetic Map8q24.11UniSTS
Cytogenetic Map10q23.1UniSTS
Cytogenetic Map1q44UniSTS
Cytogenetic Map9q22.33UniSTS
Cytogenetic Map3p21.31UniSTS
Cytogenetic Map17p13.2UniSTS
Cytogenetic Map9q21.32UniSTS
Cytogenetic Map7q34UniSTS
Cytogenetic Map9q33.3UniSTS
Cytogenetic Map1p36.1UniSTS
Cytogenetic Map20q12UniSTS
Cytogenetic Map4q21.23UniSTS
Cytogenetic Map5q13.2UniSTS
Cytogenetic Map22q12.1UniSTS
Cytogenetic Map5q31.1UniSTS
Cytogenetic Map2q21.3UniSTS
Cytogenetic Map7q21.2UniSTS
Cytogenetic Map17q22.2UniSTS
Cytogenetic Map17p13UniSTS
Cytogenetic Map12q24.11UniSTS
Cytogenetic Map18q21UniSTS
Cytogenetic Map10q11.1UniSTS
Cytogenetic Map22q11.2UniSTS
Cytogenetic Map19q12UniSTS
Cytogenetic Map7q34-q35UniSTS
Cytogenetic Map15q24.1UniSTS
Cytogenetic Map18p11.21UniSTS
Cytogenetic Map1q23.1UniSTS
Cytogenetic Map19q13.41UniSTS
Cytogenetic Map6p25.1-p23UniSTS
Cytogenetic Map11p15.4UniSTS
Cytogenetic Map10q22UniSTS
Cytogenetic Map5q35.3UniSTS
Cytogenetic Map18q12.1-q21.1UniSTS
Cytogenetic Map12p13.1UniSTS
Cytogenetic Map13q12.1UniSTS
Cytogenetic Map12q15UniSTS
Cytogenetic Map6p21.32UniSTS
Cytogenetic Map8q24.3UniSTS
Cytogenetic Map10p14UniSTS
Cytogenetic Map12p13.1-p12.3UniSTS
Cytogenetic Map3p25.2UniSTS
Cytogenetic Map6p21.33UniSTS
Cytogenetic Map6p21.3UniSTS
Cytogenetic Map3p21.2UniSTS
Cytogenetic Map10q26.3UniSTS
Cytogenetic Map1q21.3UniSTS
Cytogenetic MapXp21.2UniSTS
Cytogenetic Map7q22.1UniSTS
Cytogenetic Map14q12UniSTS
Cytogenetic Map8p11.22UniSTS
Cytogenetic Map19q13.32UniSTS
Cytogenetic Map2q21.1UniSTS
Cytogenetic Map9q21.12UniSTS
Cytogenetic Map15q23UniSTS
Cytogenetic Map7p22.2UniSTS
Cytogenetic Map8p21.2UniSTS
Cytogenetic Map7q33UniSTS
Cytogenetic Map15q15.3UniSTS
Cytogenetic Map4q21.22UniSTS
Cytogenetic Map12q13.12UniSTS
Cytogenetic Map10q24.31UniSTS
Cytogenetic Map12p13.31UniSTS
Cytogenetic Map14q32.12UniSTS
Cytogenetic Map10q24.32UniSTS
Cytogenetic Map11q12.3UniSTS
Cytogenetic Map16p12.3UniSTS
Cytogenetic Map1p34.3UniSTS
Cytogenetic Map1p36.21UniSTS
Cytogenetic Map2q24.3UniSTS
Cytogenetic Map2q33.2UniSTS
Cytogenetic Map16q24.1UniSTS
Cytogenetic Map1p31.1UniSTS
Cytogenetic Map19q13.33UniSTS
Cytogenetic Map1p36.31UniSTS
Cytogenetic Map3q13.31UniSTS
Cytogenetic Map15q22.2UniSTS
Cytogenetic Map5q32UniSTS
Cytogenetic Map6q13UniSTS
Cytogenetic MapXq24UniSTS
Cytogenetic Map6q25UniSTS
Cytogenetic Map6p21UniSTS
Cytogenetic Map2q35UniSTS
Cytogenetic Map12p13-p12UniSTS
Cytogenetic Map9p13.2UniSTS
Cytogenetic Map6p22UniSTS
Cytogenetic Map2q12.1UniSTS
Cytogenetic Map17p13.3UniSTS
Cytogenetic Map9q22.2UniSTS
Cytogenetic Map1q22UniSTS
Cytogenetic Map1p22.1UniSTS
Cytogenetic Map1p36UniSTS
Cytogenetic Map9q13-q21UniSTS
Cytogenetic Map11p15.5UniSTS
Cytogenetic MapXp11.2UniSTS
Cytogenetic Map19pUniSTS
Cytogenetic Map19p13.1-p12UniSTS
Cytogenetic Map7q22UniSTS
Cytogenetic Map12q24.33UniSTS
Cytogenetic Map3q21UniSTS
Cytogenetic Map8q24UniSTS
Cytogenetic Map18p11.31-p11.21UniSTS
Cytogenetic Map11p15.3-p15.1UniSTS
Cytogenetic Map11q13UniSTS
Cytogenetic Map8q22UniSTS
Cytogenetic Map4p15.1UniSTS
Cytogenetic Map1q25.2UniSTS
Cytogenetic Map2p16.3UniSTS
Cytogenetic Map16p13.12UniSTS
Cytogenetic Map7p21.2UniSTS
Cytogenetic Map12q21.1UniSTS
Cytogenetic Map2p14UniSTS
Cytogenetic Map6q24.3UniSTS
Cytogenetic Map10q22.2UniSTS
Cytogenetic Map5q23.1UniSTS
Cytogenetic Map10q23.2UniSTS
Cytogenetic Map7p22.3UniSTS
Cytogenetic Map21q22.2UniSTS
Cytogenetic Map6q22.1UniSTS
Cytogenetic Map1q42.1UniSTS
Cytogenetic Map1q25UniSTS
Cytogenetic Map6p22.3UniSTS
Cytogenetic Map1q21.2UniSTS
Cytogenetic Map15q22.1UniSTS
Cytogenetic Map12p13.2UniSTS
Cytogenetic Map12q22UniSTS
Cytogenetic Map3p21-p12UniSTS
Cytogenetic Map4q35UniSTS
Cytogenetic Map1p34-p33UniSTS
Cytogenetic Map21q22.11UniSTS
Cytogenetic Map3p22-p21.33UniSTS
Cytogenetic Map3q23UniSTS
Cytogenetic Map3q22.1UniSTS
Cytogenetic Map8q21.11UniSTS
Cytogenetic MapXq22.3UniSTS
Cytogenetic Map7p14UniSTS
Cytogenetic Map17q21.1UniSTS
Cytogenetic Map15q21UniSTS
Cytogenetic Map1q42.3UniSTS
Cytogenetic Map9q22UniSTS
Cytogenetic Map2q12.3UniSTS
Cytogenetic Map20q11.2-q13.2UniSTS
Cytogenetic Map17q21.31UniSTS
Cytogenetic Map17q24UniSTS
Cytogenetic Map3q25.31UniSTS
Cytogenetic Map6p24.3UniSTS
Cytogenetic Map2q31.3UniSTS
Cytogenetic Map1q31UniSTS
Cytogenetic Map7q32-q33UniSTS
Cytogenetic Map7q21.1UniSTS
Cytogenetic Map14q23-q24.2UniSTS
Cytogenetic Map19q13.3-q13.4UniSTS
Cytogenetic Map2p24-p21UniSTS
Cytogenetic Map15q11.2UniSTS
Cytogenetic Map15q26.3UniSTS
Cytogenetic Map7p22UniSTS
Cytogenetic Map12p11UniSTS
Cytogenetic Map1p35.3UniSTS
Cytogenetic Map1p12UniSTS
Cytogenetic Map13q32.3UniSTS
Cytogenetic Map5q23.3UniSTS
Cytogenetic Map20q13UniSTS
Cytogenetic Map17q25.2UniSTS
Cytogenetic Map7q36.1UniSTS
Cytogenetic Map10p12.33UniSTS
Cytogenetic Map17q21.32UniSTS
Cytogenetic MapXp11.22UniSTS
Cytogenetic Map12p13.3UniSTS
Cytogenetic MapXq25-q26UniSTS
Cytogenetic Map2q36.1UniSTS
Cytogenetic Map5p13UniSTS
Cytogenetic Map15q25UniSTS
Cytogenetic Map5q12.1UniSTS
Cytogenetic Map5p12UniSTS
Cytogenetic Map1p36.22UniSTS
Cytogenetic Map3q26.31UniSTS
Cytogenetic Map17q22-q23UniSTS
Cytogenetic MapXp22.33UniSTS
Cytogenetic MapYp11.3UniSTS
Cytogenetic Map17p11.2UniSTS
Cytogenetic MapXq13.2UniSTS
Cytogenetic Map12q23.1UniSTS
Cytogenetic Map16q12.2UniSTS
Cytogenetic Map3q26.32UniSTS
Cytogenetic Map6q22.31UniSTS
Cytogenetic Map3q26.2-q27UniSTS
Cytogenetic Map1q25.1-q25.2UniSTS
Cytogenetic Map14q24UniSTS
Cytogenetic Map9q21.13UniSTS
Cytogenetic Map10q11.22UniSTS
Cytogenetic Map22q13.31UniSTS
Cytogenetic Map3p25.1UniSTS
Cytogenetic Map5q21.3UniSTS
Cytogenetic Map5p13.3UniSTS
Cytogenetic Map10q22.1UniSTS
Cytogenetic Map14q12-q13UniSTS
Cytogenetic MapXp22UniSTS
Cytogenetic MapXq23UniSTS
Cytogenetic Map20p12.3-p11.21UniSTS
Cytogenetic Map2p21UniSTS
Cytogenetic Map17q11.2-q12UniSTS
Cytogenetic Map4q32-q34UniSTS
Cytogenetic MapXq25-q26.1UniSTS
Cytogenetic Map2p25-p24UniSTS
Cytogenetic Map2p25UniSTS
Cytogenetic Map11q13.2UniSTS
Cytogenetic MapXp22.2-p22.1UniSTS
Cytogenetic MapXq22.1UniSTS
Cytogenetic Map4q25UniSTS
Cytogenetic Map3p24.2UniSTS
Cytogenetic Map22q13UniSTS
Cytogenetic Map20q11.22-q12UniSTS
Cytogenetic Map4q34.2UniSTS
Cytogenetic Map20p13UniSTS
Cytogenetic Map22q13.1-q13.2UniSTS
Cytogenetic MapXq28UniSTS
Cytogenetic Map12q13-q14UniSTS
Cytogenetic Map6q14.1UniSTS
Cytogenetic Map12q13.3UniSTS
Cytogenetic Map9q31.2UniSTS
Cytogenetic Map11q13.1-q13.2UniSTS
Cytogenetic Map12q13UniSTS
Cytogenetic Map1p32-p31UniSTS
Cytogenetic Map21q21.2UniSTS
Cytogenetic Map10q24.3UniSTS
Cytogenetic Map16q21UniSTS
Cytogenetic Map8q21.1UniSTS
Cytogenetic Map5p13.2UniSTS
Cytogenetic Map1p34UniSTS
Cytogenetic Map1q32.2UniSTS
Cytogenetic Map4q21.3UniSTS
Cytogenetic Map7q21-q22UniSTS
Cytogenetic Map3q26.2UniSTS
Cytogenetic Map2q36.3UniSTS
Cytogenetic Map8p22UniSTS
Cytogenetic Map11q22.1UniSTS
Cytogenetic Map3q25.33UniSTS
Cytogenetic Map10q23.31UniSTS
Cytogenetic Map4p15.32UniSTS
Cytogenetic Map18q12.2UniSTS
Cytogenetic Map15q15.2UniSTS
Cytogenetic Map5q12.3UniSTS
Cytogenetic Map14q24.1UniSTS
Cytogenetic Map12q14.1UniSTS
Cytogenetic Map6p22.3-p22.1UniSTS
Cytogenetic Map7p11.2UniSTS
Cytogenetic Map6q15UniSTS
Cytogenetic Map6q23.3UniSTS
Cytogenetic Map13q14UniSTS
Cytogenetic Map5q35.2UniSTS
Cytogenetic Map10q22.3UniSTS
Cytogenetic Map1p35UniSTS
Cytogenetic Map3q12.3UniSTS
Cytogenetic Map19q13.31UniSTS
Cytogenetic Map8q23.1UniSTS
Cytogenetic Map6q27UniSTS
Cytogenetic Map2q14.3UniSTS
Cytogenetic MapXp11UniSTS
Cytogenetic Map11p15.3UniSTS
Cytogenetic Map20p12UniSTS
Cytogenetic Map15q13.1UniSTS
Cytogenetic MapXp22.3UniSTS
Cytogenetic Map11q13.5UniSTS
Cytogenetic Map19p13.3-p13.2UniSTS
Cytogenetic Map1p36.11-p34.2UniSTS
Cytogenetic Map4q22.1-q23UniSTS
Cytogenetic Map7q22.3UniSTS
Cytogenetic Map9p22UniSTS
Cytogenetic Map17q23.3UniSTS
Cytogenetic Map16q23.2UniSTS
Cytogenetic Map2p16.1UniSTS
Cytogenetic Map3q27.1UniSTS
Cytogenetic Map2p22.3UniSTS
Cytogenetic MapXq26.1UniSTS
Cytogenetic Map4q21.21UniSTS
Cytogenetic Map22q13.3UniSTS
Cytogenetic Map2q32.1UniSTS
Cytogenetic MapYp11.32UniSTS
Cytogenetic Map11p14UniSTS
Cytogenetic Map1p32.1UniSTS
Cytogenetic Map2p25.3UniSTS
Cytogenetic Map4q34.3UniSTS
Cytogenetic Map9p12UniSTS
Cytogenetic Map3q13.13UniSTS
Cytogenetic Map13q34UniSTS
Cytogenetic Map3p21UniSTS
Cytogenetic Map11q23.2UniSTS
Cytogenetic Map20p11.23UniSTS
Cytogenetic Map3p13UniSTS
Cytogenetic Map4p13UniSTS
Cytogenetic Map16q23.1UniSTS
Cytogenetic Map10p11.23UniSTS
Cytogenetic Map8p21.1UniSTS
Cytogenetic Map15q22-q24UniSTS
Cytogenetic Map8q23UniSTS
Cytogenetic Map16q12.1UniSTS
Cytogenetic Map14q13.2UniSTS
Cytogenetic Map18q12.1UniSTS
Cytogenetic Map5q31.3UniSTS
Cytogenetic Map11q14UniSTS
Cytogenetic Map13q33.1UniSTS
Cytogenetic Map14q21.2UniSTS
Cytogenetic Map4q31.3UniSTS
Cytogenetic Map15q21-q22UniSTS
Cytogenetic Map3p14.3UniSTS
Cytogenetic Map17p13.1UniSTS
Cytogenetic Map13q12.11UniSTS
Cytogenetic Map6p21.2UniSTS
Cytogenetic Map15q21.3UniSTS
Cytogenetic Map3q21.1UniSTS
Cytogenetic Map6p21.31UniSTS
Cytogenetic Map10p15.1UniSTS
Cytogenetic Map1q24.2UniSTS
Cytogenetic Map12p12UniSTS
Cytogenetic Map7p22.1UniSTS
Cytogenetic Map11q24UniSTS
Cytogenetic Map21q22.13UniSTS
Cytogenetic Map15q22.1-q22.31UniSTS
Cytogenetic Map15q22UniSTS
Cytogenetic MapXq13UniSTS
Cytogenetic Map1q31-q41UniSTS
Cytogenetic Map6p25UniSTS
Cytogenetic Map14q32.1UniSTS
Cytogenetic Map16q12-q13UniSTS
Cytogenetic MapXq12-q13UniSTS
Cytogenetic Map14q23UniSTS
Cytogenetic Map12q11-q12UniSTS
Cytogenetic Map1q42.1-q43UniSTS
Cytogenetic Map3q13.33UniSTS
Cytogenetic Map7q31UniSTS
Cytogenetic Map12q24UniSTS
Cytogenetic MapXp22.11UniSTS
Cytogenetic Map11q13.4UniSTS
Cytogenetic Map2p25.1-p24.1UniSTS
Cytogenetic Map8q24.21UniSTS
Cytogenetic Map12q13.1UniSTS
Cytogenetic Map12q22-q23.1UniSTS
Cytogenetic Map11q12.2UniSTS
Cytogenetic Map1p13.2UniSTS
Cytogenetic Map5q31.2-q34UniSTS
Cytogenetic Map11p15.1UniSTS
Cytogenetic Map6q24.2UniSTS
Cytogenetic Map22qUniSTS
Cytogenetic Map12q13.11-q14.3UniSTS
Cytogenetic Map7p11UniSTS
Cytogenetic MapXp22.12-p22.11UniSTS
Cytogenetic Map7q11.21UniSTS
Cytogenetic Map20q11.22-q11.23UniSTS
Cytogenetic Map8q24.22UniSTS
Cytogenetic Map8p22-p21.3UniSTS
Cytogenetic Map10q24UniSTS
Cytogenetic Map1q21.2-q21.3UniSTS
Cytogenetic Map1p36.12UniSTS
Cytogenetic Map9p24.1UniSTS
Cytogenetic Map6q25.2-q27UniSTS
Cytogenetic Map9q34UniSTS
Cytogenetic Map5p13.1UniSTS
Cytogenetic Map8q11.2UniSTS
Cytogenetic Map3q28-q29UniSTS
Cytogenetic Map7p14-p13UniSTS
Cytogenetic Map12q24.2UniSTS
Cytogenetic Map6p22.2UniSTS
Cytogenetic Map7q22-qterUniSTS
Cytogenetic Map12q24.2-q24.31UniSTS
Cytogenetic MapXq13.1UniSTS
Cytogenetic Map6p25.2UniSTS
Cytogenetic Map1p21UniSTS
Cytogenetic Map1q32.2-q41UniSTS
Cytogenetic Map11q22-q23UniSTS
Cytogenetic Map3q26.33UniSTS
Cytogenetic Map12q23-q24.1UniSTS
Cytogenetic Map5p15.1-p14.3UniSTS
Cytogenetic Map16p13.11UniSTS
Cytogenetic Map6q22-q23UniSTS
Cytogenetic Map9p21UniSTS
Cytogenetic Map6p12.3UniSTS
Cytogenetic Map3p12.1UniSTS
Cytogenetic Map9q21.11UniSTS
Cytogenetic Map17q24.1UniSTS
Cytogenetic Map10q11.21UniSTS
Cytogenetic Map14q21UniSTS
Cytogenetic Map11p15UniSTS
Cytogenetic Map16q22UniSTS
Cytogenetic Map15q11-q13UniSTS
Cytogenetic Map13q12-q14UniSTS
Cytogenetic Map18q21.1UniSTS
Cytogenetic Map2q24UniSTS
Cytogenetic Map12p13UniSTS
Cytogenetic Map3q28UniSTS
Cytogenetic Map7q32.1UniSTS
Cytogenetic MapXq22.2UniSTS
Cytogenetic Map7p12.3UniSTS
Cytogenetic Map7p15.1UniSTS
Cytogenetic Map2q37.2UniSTS
Cytogenetic Map18q22.3UniSTS
Cytogenetic Map14q32.13UniSTS
Cytogenetic Map14q22.1UniSTS
Cytogenetic Map16p13.1UniSTS
Cytogenetic Map7q31.3UniSTS
Cytogenetic Map20q13.2-q13.3UniSTS
Cytogenetic Map1p21.2UniSTS
Cytogenetic Map9q21.33UniSTS
Cytogenetic Map14q32.2UniSTS
Cytogenetic Map13q13.3UniSTS
Cytogenetic Map10p12.31UniSTS
Cytogenetic Map22q11.1UniSTS
Cytogenetic Map5q33.2UniSTS
Cytogenetic Map13q32.2UniSTS
Cytogenetic Map14q23.1UniSTS
Cytogenetic Map8q21.2UniSTS
Cytogenetic Map2q24.1UniSTS
Cytogenetic Map10q26.13UniSTS
Cytogenetic Map2q23.3UniSTS
Cytogenetic Map19p13.1UniSTS
Cytogenetic Map15q14-q15UniSTS
Cytogenetic Map1q42.13UniSTS
Cytogenetic Map14q31UniSTS
Cytogenetic Map7p21.1UniSTS
Cytogenetic Map8p12-p11UniSTS
Cytogenetic Map18p11.2UniSTS
Cytogenetic Map7p11.1UniSTS
Cytogenetic Map1q31-q32UniSTS
Cytogenetic Map2q12UniSTS
Cytogenetic Map3p21.32UniSTS
Cytogenetic Map2p24.2UniSTS
Cytogenetic Map2q33-q34UniSTS
Cytogenetic Map6q24.1UniSTS
Cytogenetic Map4q22.1UniSTS
Cytogenetic Map15q13.3UniSTS
Cytogenetic Map10q26.11UniSTS
Cytogenetic Map7p15.3UniSTS
Cytogenetic Map10q23.33UniSTS
Cytogenetic Map12p12.1UniSTS
Cytogenetic Map7p13-p12UniSTS
Cytogenetic MapXq25UniSTS
Cytogenetic Map17q11-q21UniSTS
Cytogenetic Map12q23UniSTS
Cytogenetic Map6p24-p22.3UniSTS
Cytogenetic Map14q23.2UniSTS
Cytogenetic Map7q31.1-q31.2UniSTS
Cytogenetic Map8q22.2UniSTS
Cytogenetic Map15q21.2UniSTS
Cytogenetic Map3p26.1-p25.1UniSTS
Cytogenetic Map5q35UniSTS
Cytogenetic Map3q13.2UniSTS
Cytogenetic Map4p15.2UniSTS
Cytogenetic Map6q16.3UniSTS
Cytogenetic Map17q24-q25UniSTS
Cytogenetic MapXq12UniSTS
Cytogenetic MapXq27.1UniSTS
Cytogenetic Map8q12.3UniSTS
Cytogenetic Map5q21.2UniSTS
Cytogenetic Map5q15UniSTS
Cytogenetic Map5q35.1UniSTS
Cytogenetic Map4q13.3UniSTS
Cytogenetic Map4q35.2UniSTS
Cytogenetic Map3p26.1UniSTS
Cytogenetic Map3p11.1UniSTS
Cytogenetic Map17q21.2UniSTS
Cytogenetic Map2q21.2UniSTS
Cytogenetic Map19p13.13UniSTS
Cytogenetic Map18q12.3UniSTS
Cytogenetic Map18p11.3UniSTS
Cytogenetic Map17q11.1UniSTS
Cytogenetic Map15q25.1UniSTS
Cytogenetic Map13q12.3UniSTS
Cytogenetic Map12q23.2UniSTS
Cytogenetic Map12q12-q13UniSTS
Cytogenetic Map12q14UniSTS
Cytogenetic Map5q33.1UniSTS
Cytogenetic Map2q32-q34UniSTS
Cytogenetic Map16q22.3UniSTS
Cytogenetic Map2p15-p13UniSTS
Cytogenetic MapXp11.4UniSTS
Cytogenetic Map19q13.33-q13.41UniSTS
Cytogenetic Map20p11UniSTS
Cytogenetic Map6q23-q24UniSTS
Cytogenetic Map2p12UniSTS
Cytogenetic Map2p13UniSTS
Cytogenetic Map13q11-q12UniSTS
Cytogenetic Map6p12.3-p11.2UniSTS
Cytogenetic Map6q16.1-q16.3UniSTS
Cytogenetic Map22q11UniSTS
Cytogenetic Map7q31.2UniSTS
Cytogenetic Map10q21.3UniSTS
Cytogenetic Map3q25.2UniSTS
Cytogenetic Map3p21.1-p14.3UniSTS
Cytogenetic Map6p12.1UniSTS
Cytogenetic Map3q23-q24UniSTS
Cytogenetic Map3q12UniSTS
Cytogenetic Map7q11.1UniSTS
Cytogenetic Map3q22.3UniSTS
Cytogenetic Map7q21.3UniSTS
Cytogenetic Map4q31.1UniSTS
Cytogenetic Map22q12-q13UniSTS
Cytogenetic Map4q23UniSTS
Cytogenetic MapXp22.12UniSTS
Cytogenetic Map6q16.1UniSTS
Cytogenetic Map13q14.13UniSTS
Cytogenetic Map18q21.3UniSTS
Cytogenetic Map9q33.2UniSTS
Cytogenetic Map11q21UniSTS
Cytogenetic Map8q12UniSTS
Cytogenetic Map4q28-q32UniSTS
Cytogenetic Map17q24.3UniSTS
Cytogenetic Map6p23UniSTS
Cytogenetic Map8p11UniSTS
Cytogenetic Map5q34UniSTS
Cytogenetic Map1q24.3UniSTS
Cytogenetic Map9q33.1UniSTS
Cytogenetic Map1q23.3UniSTS
Cytogenetic Map2p16.2UniSTS
Cytogenetic Map9q22.31UniSTS
Cytogenetic Map9p24.3UniSTS
Cytogenetic Map7q35UniSTS
Cytogenetic Map1p36.2UniSTS
Cytogenetic Map11q22.3UniSTS
Cytogenetic Map16p12UniSTS
Cytogenetic Map1q22-q23UniSTS
Cytogenetic Map13q22.1UniSTS
Cytogenetic Map2q12.2UniSTS
Cytogenetic Map8p12UniSTS
Cytogenetic Map4q21UniSTS
Cytogenetic Map13q12.2UniSTS
Cytogenetic Map9q31-q33UniSTS
Cytogenetic Map6p24.1UniSTS
Cytogenetic Map1q23UniSTS
Cytogenetic Map11q12-q13UniSTS
Cytogenetic Map11q13.3UniSTS
Cytogenetic Map11q24.2UniSTS
Cytogenetic Map11q12.1UniSTS
Cytogenetic Map3p26UniSTS
Cytogenetic Map5q13UniSTS
Cytogenetic Map8p21UniSTS
Cytogenetic Map19q13.1-q13.2UniSTS
Cytogenetic Map1p33-p32UniSTS
Cytogenetic Map7q36.2UniSTS
Cytogenetic Map4q32.3UniSTS
Cytogenetic Map16p13.2UniSTS
Cytogenetic Map14q32UniSTS
Cytogenetic Map10q11.23UniSTS
Cytogenetic Map10q26.1UniSTS
Cytogenetic Map9q32-q33.3UniSTS
Cytogenetic Map9q22.1-q22.2UniSTS
Cytogenetic Map3q26.1-q26.2UniSTS
Cytogenetic Map5q31-q34UniSTS
Cytogenetic Map9q33-q34UniSTS
Cytogenetic Map5q11.2-q13.2UniSTS
Cytogenetic Map13q32UniSTS
Cytogenetic Map9q22.32UniSTS
Cytogenetic Map1p36.3UniSTS
Cytogenetic Map1p36.3-p36.2UniSTS
Cytogenetic Map4q28.1UniSTS
Cytogenetic Map5q22UniSTS
Cytogenetic Map12p11.21UniSTS
Cytogenetic MapXq13.3UniSTS
Cytogenetic Map9q31.3UniSTS
Cytogenetic Map3p26.3UniSTS
Cytogenetic Map2q11.1UniSTS
Cytogenetic Map21q11.2UniSTS
Cytogenetic Map18q21.32UniSTS
Cytogenetic Map15q26.2UniSTS
Cytogenetic Map12q24.23UniSTS
Cytogenetic Map10q25.3UniSTS
Cytogenetic Map20q11.23UniSTS
Cytogenetic Map20p12.1UniSTS
Cytogenetic Map2q31.1-q31.2UniSTS
Cytogenetic MapXp22.31UniSTS
Cytogenetic MapXp21.3UniSTS
Cytogenetic Map5q33.3UniSTS
Cytogenetic Map4q28.2UniSTS
Cytogenetic Map3p14.2UniSTS
Cytogenetic Map3q24UniSTS
Cytogenetic Map2q13UniSTS
Cytogenetic Map20q13.2UniSTS
Cytogenetic Map14q11.2-q12UniSTS
Cytogenetic Map3p24UniSTS
Cytogenetic Map12q23.3UniSTS
Cytogenetic Map11q24.3UniSTS
Cytogenetic Map11q14.3UniSTS
Cytogenetic Map10q25.2UniSTS
Cytogenetic Map3q25.1UniSTS
Cytogenetic Map8q13UniSTS
Cytogenetic Map1p22.2UniSTS
Cytogenetic Map3p22.3UniSTS
Cytogenetic Map18q11.1UniSTS
Cytogenetic Map8q23.3UniSTS
Cytogenetic Map15q24UniSTS
Cytogenetic Map11cen-q12UniSTS
Cytogenetic Map11q25UniSTS
Cytogenetic Map3p22.2UniSTS
Cytogenetic MapXp21.1UniSTS
Cytogenetic Map7q36UniSTS
Cytogenetic Map7p14.3UniSTS
Cytogenetic Map12q21UniSTS
Cytogenetic Map7p15UniSTS
Cytogenetic Map7q22-q31UniSTS
Cytogenetic Map11q22UniSTS
Cytogenetic Map5p15.3UniSTS
Cytogenetic Map20q13.3-qterUniSTS
Cytogenetic Map1p35-p34UniSTS
Cytogenetic Map4p13-p12UniSTS
Cytogenetic Map10q21-q22UniSTS
Cytogenetic Map4q22UniSTS
Cytogenetic Map7p13-p11.1UniSTS
Cytogenetic Map9q31-q34UniSTS
Cytogenetic Map7q21.1-q22UniSTS
Cytogenetic Map15q26.1UniSTS
Cytogenetic Map3q13.13-q13.2UniSTS
Cytogenetic MapXp22.13UniSTS
Cytogenetic Map13q12.12UniSTS
Cytogenetic Map13q14.2UniSTS
Cytogenetic Map12qUniSTS
Cytogenetic Map1pUniSTS
Cytogenetic Map16pUniSTS
Cytogenetic Map15qUniSTS
Cytogenetic Map7qUniSTS
Cytogenetic Map2qUniSTS
Cytogenetic Map5q13.1UniSTS
Cytogenetic Map11p14.1UniSTS
Cytogenetic Map4q32UniSTS
Cytogenetic Map2p22UniSTS
Cytogenetic Map5q14.3UniSTS
Cytogenetic Map10p12.1UniSTS
Cytogenetic Map5q23.2UniSTS
Cytogenetic Map2p24.1UniSTS
Cytogenetic Map8q24.13UniSTS
Cytogenetic Map12p13.32UniSTS
Cytogenetic Map9p21.1UniSTS
Cytogenetic Map9q34.2-q34.3UniSTS
G32507  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371718,639,140 - 18,639,292UniSTSGRCh37
GRCh371715,531,413 - 15,531,565UniSTSGRCh37
Cytogenetic Map17p11.2UniSTS
HuRef1715,404,908 - 15,405,060UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High
Medium 989 237 707 160 74 44 1925 606 176 88 620 974 129 765 838 1
Low 1450 2627 1003 448 1744 405 2431 1589 3557 328 839 639 46 1 439 1950 3 2
Below cutoff 127 16 16 133 16 1 2 1 3 1 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001348119 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001348120 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001348121 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001348122 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001348124 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001348125 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001348126 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_006470 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC005324 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF096870 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK002035 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK056026 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK314557 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC001564 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC015674 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC053514 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC067096 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH878675 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068261 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CR457136 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA709639 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GN344137 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENST00000336708   ⟹   ENSP00000338989
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1715,627,967 - 15,682,879 (-)Ensembl
RefSeq Acc Id: ENST00000416464   ⟹   ENSP00000399918
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1715,627,960 - 15,684,299 (-)Ensembl
RefSeq Acc Id: ENST00000460728
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1715,636,222 - 15,684,283 (-)Ensembl
RefSeq Acc Id: ENST00000473368
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1715,631,659 - 15,632,923 (-)Ensembl
RefSeq Acc Id: ENST00000473540
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1715,632,632 - 15,684,273 (-)Ensembl
RefSeq Acc Id: ENST00000473659
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1715,654,262 - 15,684,275 (-)Ensembl
RefSeq Acc Id: ENST00000494759   ⟹   ENSP00000465169
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1715,654,390 - 15,680,918 (-)Ensembl
RefSeq Acc Id: ENST00000577326
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1715,628,696 - 15,632,035 (-)Ensembl
RefSeq Acc Id: ENST00000577372   ⟹   ENSP00000463293
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1715,632,531 - 15,643,275 (-)Ensembl
RefSeq Acc Id: ENST00000577446   ⟹   ENSP00000467031
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1715,627,966 - 15,636,143 (-)Ensembl
RefSeq Acc Id: ENST00000577886   ⟹   ENSP00000462903
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1715,627,960 - 15,642,964 (-)Ensembl
RefSeq Acc Id: ENST00000578237   ⟹   ENSP00000463188
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1715,627,960 - 15,684,300 (-)Ensembl
RefSeq Acc Id: ENST00000578744   ⟹   ENSP00000465907
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1715,632,594 - 15,680,930 (-)Ensembl
RefSeq Acc Id: ENST00000579219   ⟹   ENSP00000463639
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1715,628,648 - 15,642,934 (-)Ensembl
RefSeq Acc Id: ENST00000579272
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1715,642,734 - 15,684,297 (-)Ensembl
RefSeq Acc Id: ENST00000579535
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1715,677,175 - 15,684,301 (-)Ensembl
RefSeq Acc Id: ENST00000579630
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1715,682,854 - 15,684,311 (-)Ensembl
RefSeq Acc Id: ENST00000579843
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1715,681,088 - 15,684,299 (-)Ensembl
RefSeq Acc Id: ENST00000580110   ⟹   ENSP00000464072
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1715,629,161 - 15,642,932 (-)Ensembl
RefSeq Acc Id: ENST00000580388
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1715,677,631 - 15,684,298 (-)Ensembl
RefSeq Acc Id: ENST00000581200   ⟹   ENSP00000463360
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1715,636,206 - 15,684,310 (-)Ensembl
RefSeq Acc Id: ENST00000581224
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1715,636,204 - 15,684,297 (-)Ensembl
RefSeq Acc Id: ENST00000582182
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1715,677,274 - 15,683,376 (-)Ensembl
RefSeq Acc Id: ENST00000582708
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1715,677,575 - 15,684,299 (-)Ensembl
RefSeq Acc Id: ENST00000584142
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1715,651,837 - 15,684,266 (-)Ensembl
RefSeq Acc Id: ENST00000649191   ⟹   ENSP00000497185
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1715,627,966 - 15,684,311 (-)Ensembl
RefSeq Acc Id: NM_001348119   ⟹   NP_001335048
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381715,627,966 - 15,684,311 (-)NCBI
T2T-CHM13v2.01715,534,188 - 15,590,551 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001348120   ⟹   NP_001335049
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381715,627,966 - 15,684,311 (-)NCBI
T2T-CHM13v2.01715,534,188 - 15,590,551 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001348121   ⟹   NP_001335050
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381715,627,966 - 15,684,311 (-)NCBI
T2T-CHM13v2.01715,534,188 - 15,590,551 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001348122   ⟹   NP_001335051
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381715,627,966 - 15,684,311 (-)NCBI
T2T-CHM13v2.01715,534,188 - 15,590,551 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001348124   ⟹   NP_001335053
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381715,627,966 - 15,684,311 (-)NCBI
T2T-CHM13v2.01715,534,188 - 15,590,551 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001348125   ⟹   NP_001335054
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381715,627,966 - 15,684,311 (-)NCBI
T2T-CHM13v2.01715,534,188 - 15,590,551 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001348126   ⟹   NP_001335055
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381715,627,966 - 15,684,311 (-)NCBI
T2T-CHM13v2.01715,534,188 - 15,590,551 (-)NCBI
Sequence:
RefSeq Acc Id: NM_006470   ⟹   NP_006461
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381715,627,966 - 15,682,951 (-)NCBI
GRCh371715,531,277 - 15,587,625 (-)NCBI
Build 361715,472,005 - 15,526,918 (-)NCBI Archive
HuRef1715,404,775 - 15,461,210 (-)NCBI
CHM1_11715,540,352 - 15,595,047 (-)NCBI
T2T-CHM13v2.01715,534,188 - 15,589,191 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_006461   ⟸   NM_006470
- Peptide Label: isoform a
- UniProtKB: Q96BE8 (UniProtKB/Swiss-Prot),   Q7Z6I2 (UniProtKB/Swiss-Prot),   Q6IAL8 (UniProtKB/Swiss-Prot),   Q96J43 (UniProtKB/Swiss-Prot),   O95361 (UniProtKB/Swiss-Prot),   B2RB95 (UniProtKB/TrEMBL),   B3KMJ2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001335050   ⟸   NM_001348121
- Peptide Label: isoform b
- UniProtKB: B3KP96 (UniProtKB/TrEMBL),   B4DE22 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001335051   ⟸   NM_001348122
- Peptide Label: isoform b
- UniProtKB: B3KP96 (UniProtKB/TrEMBL),   B4DE22 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001335049   ⟸   NM_001348120
- Peptide Label: isoform a
- UniProtKB: Q96BE8 (UniProtKB/Swiss-Prot),   Q7Z6I2 (UniProtKB/Swiss-Prot),   Q6IAL8 (UniProtKB/Swiss-Prot),   Q96J43 (UniProtKB/Swiss-Prot),   O95361 (UniProtKB/Swiss-Prot),   B2RB95 (UniProtKB/TrEMBL),   B3KMJ2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001335055   ⟸   NM_001348126
- Peptide Label: isoform d
- UniProtKB: B4DE22 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001335053   ⟸   NM_001348124
- Peptide Label: isoform c
- UniProtKB: Q309B1 (UniProtKB/Swiss-Prot),   B4DWQ8 (UniProtKB/Swiss-Prot),   B4DQK2 (UniProtKB/Swiss-Prot),   B2RUW6 (UniProtKB/Swiss-Prot),   A0PK10 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001335048   ⟸   NM_001348119
- Peptide Label: isoform a
- UniProtKB: Q96BE8 (UniProtKB/Swiss-Prot),   Q7Z6I2 (UniProtKB/Swiss-Prot),   Q6IAL8 (UniProtKB/Swiss-Prot),   Q96J43 (UniProtKB/Swiss-Prot),   O95361 (UniProtKB/Swiss-Prot),   B2RB95 (UniProtKB/TrEMBL),   B3KMJ2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001335054   ⟸   NM_001348125
- Peptide Label: isoform c
- UniProtKB: Q309B1 (UniProtKB/Swiss-Prot),   B4DWQ8 (UniProtKB/Swiss-Prot),   B4DQK2 (UniProtKB/Swiss-Prot),   B2RUW6 (UniProtKB/Swiss-Prot),   A0PK10 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSP00000464072   ⟸   ENST00000580110
RefSeq Acc Id: ENSP00000497185   ⟸   ENST00000649191
RefSeq Acc Id: ENSP00000463360   ⟸   ENST00000581200
RefSeq Acc Id: ENSP00000338989   ⟸   ENST00000336708
RefSeq Acc Id: ENSP00000465169   ⟸   ENST00000494759
RefSeq Acc Id: ENSP00000399918   ⟸   ENST00000416464
RefSeq Acc Id: ENSP00000463293   ⟸   ENST00000577372
RefSeq Acc Id: ENSP00000467031   ⟸   ENST00000577446
RefSeq Acc Id: ENSP00000462903   ⟸   ENST00000577886
RefSeq Acc Id: ENSP00000465907   ⟸   ENST00000578744
RefSeq Acc Id: ENSP00000463188   ⟸   ENST00000578237
RefSeq Acc Id: ENSP00000463639   ⟸   ENST00000579219
Protein Domains
B box-type   B30.2/SPRY

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-O95361-F1-model_v2 AlphaFold O95361 1-564 view protein structure

Promoters
RGD ID:6793980
Promoter ID:HG_KWN:25092
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:HeLa_S3,   K562,   NB4
Transcripts:UC002GOR.1
Position:
Human AssemblyChrPosition (strand)Source
Build 361715,495,516 - 15,496,016 (-)MPROMDB
RGD ID:6794646
Promoter ID:HG_KWN:25094
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:HeLa_S3,   Lymphoblastoid,   NB4
Transcripts:ENST00000336708,   ENST00000395902,   OTTHUMT00000131016,   OTTHUMT00000131017,   OTTHUMT00000131018
Position:
Human AssemblyChrPosition (strand)Source
Build 361715,528,049 - 15,528,549 (-)MPROMDB
RGD ID:7234087
Promoter ID:EPDNEW_H22789
Type:initiation region
Name:TRIM16_2
Description:tripartite motif containing 16
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H22790  EPDNEW_H22791  
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381715,642,932 - 15,642,992EPDNEW
RGD ID:7234089
Promoter ID:EPDNEW_H22790
Type:initiation region
Name:TRIM16_1
Description:tripartite motif containing 16
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H22789  EPDNEW_H22791  
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381715,651,645 - 15,651,705EPDNEW
RGD ID:7234091
Promoter ID:EPDNEW_H22791
Type:initiation region
Name:TRIM16_3
Description:tripartite motif containing 16
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H22789  EPDNEW_H22790  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381715,651,861 - 15,651,921EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:17241 AgrOrtholog
COSMIC TRIM16 COSMIC
Ensembl Genes ENSG00000221926 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000336708 ENTREZGENE
  ENST00000336708.11 UniProtKB/Swiss-Prot
  ENST00000416464 ENTREZGENE
  ENST00000416464.6 UniProtKB/TrEMBL
  ENST00000494759.1 UniProtKB/TrEMBL
  ENST00000577372.5 UniProtKB/TrEMBL
  ENST00000577446.5 UniProtKB/TrEMBL
  ENST00000577886 ENTREZGENE
  ENST00000577886.5 UniProtKB/Swiss-Prot
  ENST00000578237.5 UniProtKB/Swiss-Prot
  ENST00000578744.5 UniProtKB/TrEMBL
  ENST00000579219.5 UniProtKB/TrEMBL
  ENST00000580110.5 UniProtKB/TrEMBL
  ENST00000581200.1 UniProtKB/TrEMBL
  ENST00000649191 ENTREZGENE
  ENST00000649191.2 UniProtKB/Swiss-Prot
Gene3D-CATH 2.60.120.920 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  4.10.830.40 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000221926 GTEx
HGNC ID HGNC:17241 ENTREZGENE
Human Proteome Map TRIM16 Human Proteome Map
InterPro B30.2/SPRY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  B30.2/SPRY_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Butyrophylin_SPRY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ConA-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  KRAB_dom_sf UniProtKB/TrEMBL
  PRY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SPRY_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_B-box UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:10626 UniProtKB/Swiss-Prot
NCBI Gene 10626 ENTREZGENE
OMIM 609505 OMIM
PANTHER B-BOX DOMAIN CONTAINING UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  F-BOX AND WD REPEAT DOMAIN CONTAINING PROTEIN 10B-RELATED UniProtKB/TrEMBL
  TRIPARTITE MOTIF-CONTAINING PROTEIN 16-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  UBIQUITIN LIGASE SPECIFICITY FACTOR/HREP PROTEIN UniProtKB/TrEMBL
Pfam PRY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SPRY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  zf-B_box UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA38215 PharmGKB
PRINTS BUTYPHLNCDUF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE B302_SPRY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZF_BBOX UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART BBOX UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PRY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SPRY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP B-box zinc-binding domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF109640 UniProtKB/TrEMBL
  SSF49899 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0PK10 ENTREZGENE
  B2RB95 ENTREZGENE, UniProtKB/TrEMBL
  B2RUW6 ENTREZGENE
  B3KMJ2 ENTREZGENE, UniProtKB/TrEMBL
  B3KP96 ENTREZGENE, UniProtKB/TrEMBL
  B4DE22 ENTREZGENE, UniProtKB/TrEMBL
  B4DQK2 ENTREZGENE
  B4DWQ8 ENTREZGENE
  J3QKY5_HUMAN UniProtKB/TrEMBL
  J3QL38_HUMAN UniProtKB/TrEMBL
  J3QLP0_HUMAN UniProtKB/TrEMBL
  J3QR69_HUMAN UniProtKB/TrEMBL
  K7EJH2_HUMAN UniProtKB/TrEMBL
  K7EL43_HUMAN UniProtKB/TrEMBL
  K7ENN8_HUMAN UniProtKB/TrEMBL
  O95361 ENTREZGENE
  Q309B1 ENTREZGENE
  Q6IAL8 ENTREZGENE
  Q7Z6I2 ENTREZGENE
  Q96BE8 ENTREZGENE
  Q96J43 ENTREZGENE
  TRI16_HUMAN UniProtKB/Swiss-Prot
UniProt Secondary Q6IAL8 UniProtKB/Swiss-Prot
  Q7Z6I2 UniProtKB/Swiss-Prot
  Q96BE8 UniProtKB/Swiss-Prot
  Q96J43 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-27 TRIM16  tripartite motif containing 16  TRIM16  tripartite motif-containing 16  Symbol and/or name change 5135510 APPROVED