SP100 (SP100 nuclear antigen) - Rat Genome Database
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Gene: SP100 (SP100 nuclear antigen) Homo sapiens
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Symbol: SP100
Name: SP100 nuclear antigen
RGD ID: 1348100
Description: Exhibits several functions, including DNA-binding transcription factor activity, RNA polymerase II-specific; chromo shadow domain binding activity; and protein homodimerization activity. Involved in several processes, including innate immune response; regulation of signal transduction; and regulation of transcription, DNA-templated. Localizes to cytoplasm and nuclear lumen. Colocalizes with Mre11 complex.
Type: protein-coding
RefSeq Status: REVIEWED
Also known as: DKFZp686E07254; FLJ00340; FLJ34579; lysp100b; nuclear autoantigen Sp-100; nuclear dot-associated Sp100 protein; SP100-HMG nuclear autoantigen; speckled 100 kDa
Orthologs:
Mus musculus (house mouse) : Sp100 (nuclear antigen Sp100)  MGI  Alliance
Rattus norvegicus (Norway rat) : Sp100 (SP100 nuclear antigen)  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Sp100 (SP100 nuclear antigen)
Pan paniscus (bonobo/pygmy chimpanzee) : SP100 (SP100 nuclear antigen)
Canis lupus familiaris (dog) : SP100 (SP100 nuclear antigen)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Sp100 (SP100 nuclear antigen)
Sus scrofa (pig) : LOC100517129 (nuclear body protein SP140-like protein)
Chlorocebus sabaeus (African green monkey) : SP100 (SP100 nuclear antigen)
Heterocephalus glaber (naked mole-rat) : Sp100 (SP100 nuclear antigen)
more info ...
Related Pseudogenes: HMGB1P37  
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl2230,415,942 - 230,545,606 (+)EnsemblGRCh38hg38GRCh38
GRCh382230,416,201 - 230,545,606 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh372231,280,871 - 231,410,317 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362230,989,115 - 231,118,561 (+)NCBINCBI36hg18NCBI36
Build 342231,106,485 - 231,206,745NCBI
Celera2225,057,025 - 225,186,692 (+)NCBI
Cytogenetic Map2q37.1NCBI
HuRef2223,121,005 - 223,250,289 (+)NCBIHuRef
CHM1_12231,286,764 - 231,416,096 (+)NCBICHM1_1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

References - curated
1. GOA_HUMAN data from the GO Consortium
2. RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:2258622   PMID:8695863   PMID:8810287   PMID:9230084   PMID:9412458   PMID:9636146   PMID:9636147   PMID:9973607   PMID:10212234   PMID:10766566   PMID:10921892   PMID:11112690  
PMID:11313457   PMID:11574059   PMID:11716541   PMID:11792325   PMID:11909962   PMID:12470659   PMID:12477932   PMID:14647468   PMID:14702039   PMID:15017387   PMID:15247905   PMID:15489334  
PMID:15592518   PMID:15608651   PMID:15767676   PMID:15882967   PMID:16177824   PMID:16189514   PMID:16344560   PMID:16415175   PMID:16524884   PMID:16873258   PMID:17000644   PMID:17081983  
PMID:17245429   PMID:17332504   PMID:17491593   PMID:18029348   PMID:18538659   PMID:18691969   PMID:19135898   PMID:19274049   PMID:19279115   PMID:20130140   PMID:20211142   PMID:20379614  
PMID:20512085   PMID:20805487   PMID:20936779   PMID:21044950   PMID:21172801   PMID:21274506   PMID:21383994   PMID:21471311   PMID:21516116   PMID:21734036   PMID:21779164   PMID:21873635  
PMID:21880768   PMID:21988832   PMID:22086178   PMID:22278248   PMID:22419217   PMID:22544055   PMID:22658674   PMID:22863883   PMID:22878415   PMID:22939629   PMID:23221561   PMID:23485562  
PMID:23830076   PMID:23867815   PMID:24089549   PMID:24194542   PMID:24623443   PMID:24637324   PMID:24740910   PMID:25027693   PMID:25416956   PMID:25693804   PMID:25910212   PMID:26057166  
PMID:26491169   PMID:26496610   PMID:27107012   PMID:27107014   PMID:27129259   PMID:27211601   PMID:28439026   PMID:28514442   PMID:28620180   PMID:28680062   PMID:28750047   PMID:28968443  
PMID:29180619   PMID:29509190   PMID:29852174   PMID:30021884   PMID:30060604   PMID:30260704   PMID:30854688   PMID:31180531   PMID:31515488   PMID:31753913   PMID:32296183  


Genomics

Comparative Map Data
SP100
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl2230,415,942 - 230,545,606 (+)EnsemblGRCh38hg38GRCh38
GRCh382230,416,201 - 230,545,606 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh372231,280,871 - 231,410,317 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362230,989,115 - 231,118,561 (+)NCBINCBI36hg18NCBI36
Build 342231,106,485 - 231,206,745NCBI
Celera2225,057,025 - 225,186,692 (+)NCBI
Cytogenetic Map2q37.1NCBI
HuRef2223,121,005 - 223,250,289 (+)NCBIHuRef
CHM1_12231,286,764 - 231,416,096 (+)NCBICHM1_1
Sp100
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39185,577,683 - 85,637,719 (+)NCBI
GRCm38185,649,948 - 85,709,998 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl185,649,988 - 85,709,998 (+)EnsemblGRCm38mm10GRCm38
MGSCv37187,546,625 - 87,606,023 (+)NCBIGRCm37mm9NCBIm37
MGSCv36187,481,185 - 87,532,732 (+)NCBImm8
Celera188,624,849 - 88,674,129 (+)NCBICelera
Cytogenetic Map1C5NCBI
cM Map143.6NCBI
Sp100
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0992,675,103 - 92,718,489 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl992,681,078 - 92,717,929 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0990,732,749 - 90,750,820 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.0992,405,689 - 92,449,075 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4984,374,288 - 84,409,976 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1984,557,706 - 84,593,391 (+)NCBI
Celera983,734,331 - 83,769,903 (+)NCBICelera
Cytogenetic Map9q35NCBI
Sp100
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554534,774,739 - 4,856,238 (-)NCBIChiLan1.0ChiLan1.0
SP100
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12B236,474,298 - 236,601,277 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B236,496,446 - 236,601,096 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02B117,673,152 - 117,799,911 (+)NCBIMhudiblu_PPA_v0panPan3
SP100
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl2542,538,571 - 42,635,649 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.12542,538,428 - 42,635,825 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Sp100
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365256,136,343 - 6,231,051 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LOC100517129
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.115131,299,923 - 131,381,253 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215145,104,815 - 145,137,478 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SP100
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1 Ensembl10116,459,050 - 116,590,215 (+)Ensembl
ChlSab1.110116,454,261 - 116,587,093 (+)NCBI
Sp100
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248433,982,920 - 4,058,081 (+)NCBI

Position Markers
RH70945  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372231,280,887 - 231,281,097UniSTSGRCh37
Build 362230,989,131 - 230,989,341RGDNCBI36
Celera2225,057,041 - 225,057,251RGD
Cytogenetic Map2q37.1UniSTS
HuRef2223,121,021 - 223,121,231UniSTS
GeneMap99-GB4 RH Map2711.41UniSTS
NCBI RH Map21877.6UniSTS
RH93607  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372231,334,197 - 231,334,323UniSTSGRCh37
Build 362231,042,441 - 231,042,567RGDNCBI36
Celera2225,110,369 - 225,110,495RGD
Cytogenetic Map2q37.1UniSTS
HuRef2223,173,924 - 223,174,050UniSTS
GeneMap99-GB4 RH Map2714.84UniSTS
SHGC-144697  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372231,310,791 - 231,311,139UniSTSGRCh37
Build 362231,019,035 - 231,019,383RGDNCBI36
Celera2225,086,960 - 225,087,308RGD
Cytogenetic Map2q37.1UniSTS
HuRef2223,150,857 - 223,151,205UniSTS
TNG Radiation Hybrid Map2128460.0UniSTS
D2S2641  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372231,334,835 - 231,334,958UniSTSGRCh37
Build 362231,043,079 - 231,043,202RGDNCBI36
Celera2225,111,007 - 225,111,130RGD
Cytogenetic Map2q37.1UniSTS
HuRef2223,174,562 - 223,174,685UniSTS
GeneMap99-GB4 RH Map2713.52UniSTS
Whitehead-RH Map21057.2UniSTS
Whitehead-YAC Contig Map2 UniSTS
NCBI RH Map21877.6UniSTS
WIAF-2192  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372231,330,508 - 231,330,607UniSTSGRCh37
Build 362231,038,752 - 231,038,851RGDNCBI36
Celera2225,106,673 - 225,106,772RGD
Cytogenetic Map2q37.1UniSTS
HuRef2223,170,227 - 223,170,326UniSTS
GeneMap99-GB4 RH Map2713.52UniSTS
PMC56901P1  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372231,379,275 - 231,379,888UniSTSGRCh37
Build 362231,087,519 - 231,088,132RGDNCBI36
Celera2225,155,648 - 225,156,261RGD
Cytogenetic Map2q35UniSTS
Cytogenetic Map2q37.1UniSTS
HuRef2223,219,240 - 223,219,853UniSTS
PMC56901P2  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372231,375,422 - 231,375,951UniSTSGRCh37
Build 362231,083,666 - 231,084,195RGDNCBI36
Celera2225,151,796 - 225,152,325RGD
Cytogenetic Map2q37.1UniSTS
HuRef2223,215,390 - 223,215,919UniSTS
REN30944  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh376132,626,332 - 132,626,581UniSTSGRCh37
GRCh372231,355,974 - 231,356,220UniSTSGRCh37
Build 362231,064,218 - 231,064,464RGDNCBI36
Celera6133,373,214 - 133,373,463UniSTS
Celera2225,132,150 - 225,132,396RGD
Cytogenetic Map6q23.2UniSTS
Cytogenetic Map2q37.1UniSTS
HuRef6130,201,426 - 130,201,675UniSTS
HuRef5125,450,621 - 125,450,869UniSTS
D2S2624  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372231,326,089 - 231,326,196UniSTSGRCh37
Build 362231,034,333 - 231,034,440RGDNCBI36
Celera2225,102,254 - 225,102,361RGD
Cytogenetic Map2q37.1UniSTS
HuRef2223,165,808 - 223,165,915UniSTS
GeneMap99-GB4 RH Map2713.52UniSTS
Whitehead-RH Map21057.2UniSTS
Whitehead-YAC Contig Map2 UniSTS
NCBI RH Map21877.6UniSTS
SHGC-60177  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372231,334,119 - 231,334,220UniSTSGRCh37
Build 362231,042,363 - 231,042,464RGDNCBI36
Celera2225,110,291 - 225,110,392RGD
Cytogenetic Map2q37.1UniSTS
HuRef2223,173,846 - 223,173,947UniSTS
TNG Radiation Hybrid Map2128478.0UniSTS
RH68107  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372231,334,201 - 231,334,343UniSTSGRCh37
Build 362231,042,445 - 231,042,587RGDNCBI36
Celera2225,110,373 - 225,110,515RGD
Cytogenetic Map2q37.1UniSTS
HuRef2223,173,928 - 223,174,070UniSTS
GeneMap99-GB4 RH Map2713.73UniSTS
GDB:335751  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map1q42.12UniSTS
Cytogenetic Map9q34.13UniSTS
Cytogenetic Map9p13.3-p12UniSTS
Cytogenetic Map14q24.3UniSTS
Cytogenetic Map22q13.1UniSTS
Cytogenetic Map19q13.42UniSTS
Cytogenetic Map16p13.3UniSTS
Cytogenetic Map6q21UniSTS
Cytogenetic Map9q22.3UniSTS
Cytogenetic Map17q25.1UniSTS
Cytogenetic Map11q24.2UniSTS
Cytogenetic Map10q23.1UniSTS
Cytogenetic Map10q24.1UniSTS
Cytogenetic Map11q13.1UniSTS
Cytogenetic Map19p13.2UniSTS
Cytogenetic Map10q11.1UniSTS
Cytogenetic Map20q13.31UniSTS
Cytogenetic Map3q22.2UniSTS
Cytogenetic Map15q14UniSTS
Cytogenetic Map11q23.1UniSTS
Cytogenetic Map4p14UniSTS
Cytogenetic Map8q22UniSTS
Cytogenetic Map19p12UniSTS
Cytogenetic Map7p21.2UniSTS
Cytogenetic Map3p21-p12UniSTS
Cytogenetic Map3q26.2UniSTS
Cytogenetic Map9q21.32UniSTS
Cytogenetic Map12q13.3UniSTS
Cytogenetic Map2q37.1UniSTS
Cytogenetic Map10q26.3UniSTS
Cytogenetic Map18p11.31UniSTS
Cytogenetic Map17q24.1UniSTS
Cytogenetic Map10p13UniSTS
Cytogenetic Map13q11UniSTS
Cytogenetic Map10q11.22UniSTS
Cytogenetic Map17q11.2UniSTS
Cytogenetic Map19q13.4UniSTS
Cytogenetic Map6p21.1-p12.2UniSTS
Cytogenetic Map9p12UniSTS
Cytogenetic Map21q22.11UniSTS
Cytogenetic Map13q14.3UniSTS
Cytogenetic Map1q21.3UniSTS
Cytogenetic Map17q22UniSTS
Cytogenetic Map3q27.1UniSTS
Cytogenetic Map22q13UniSTS
Cytogenetic Map16q12.1UniSTS
Cytogenetic Map10q24.32UniSTS
Cytogenetic Map1p36.21UniSTS
Cytogenetic Map7q11.23UniSTS
Cytogenetic Map12q24UniSTS
Cytogenetic Map17p13.3UniSTS
Cytogenetic Map14q12UniSTS
Cytogenetic Map1p34.1UniSTS
Cytogenetic Map3q21UniSTS
Cytogenetic Map5q11.2UniSTS
Cytogenetic Map16p11.2UniSTS
Cytogenetic Map13q12.13UniSTS
Cytogenetic Map2p23.3UniSTS
Cytogenetic Map11q13.4UniSTS
Cytogenetic Map2q14.3UniSTS
Cytogenetic Map10q23.33UniSTS
Cytogenetic MapXq24UniSTS
Cytogenetic Map2q37.3UniSTS
Cytogenetic Map5q35.3UniSTS
Cytogenetic Map2q33.1UniSTS
Cytogenetic Map20q13.33UniSTS
Cytogenetic Map5p12UniSTS
Cytogenetic Map1p32.3UniSTS
Cytogenetic Map6q22.1UniSTS
Cytogenetic Map17p13UniSTS
Cytogenetic Map8p11UniSTS
Cytogenetic Map18q21.33UniSTS
Cytogenetic Map14q23.2UniSTS
Cytogenetic Map1q21.2UniSTS
Cytogenetic Map10q26UniSTS
Cytogenetic Map1p36.33UniSTS
Cytogenetic Map5q13.2UniSTS
Cytogenetic Map3q29UniSTS
Cytogenetic Map3p14.3UniSTS
Cytogenetic Map22q13.1-q13.2UniSTS
Cytogenetic Map14q32UniSTS
Cytogenetic Map9q31.3UniSTS
Cytogenetic Map19q13.2UniSTS
Cytogenetic Map7q11.21UniSTS
Cytogenetic Map4q24UniSTS
Cytogenetic Map19q13.11UniSTS
Cytogenetic Map10p11.21UniSTS
Cytogenetic Map6p12.3UniSTS
Cytogenetic Map3q12.1UniSTS
Cytogenetic Map6q13UniSTS
Cytogenetic Map1q32.3UniSTS
Cytogenetic Map1q21.1UniSTS
Cytogenetic Map19p13.3UniSTS
Cytogenetic Map5p13UniSTS
Cytogenetic Map15q11.2UniSTS
Cytogenetic Map10q24-q25UniSTS
Cytogenetic Map1p36.11UniSTS
Cytogenetic Map9q34.3UniSTS
Cytogenetic Map21q22.2UniSTS
Cytogenetic Map11q13.5UniSTS
Cytogenetic Map15q15.1UniSTS
Cytogenetic Map17q21.31UniSTS
Cytogenetic Map6p24.1UniSTS
Cytogenetic Map9q22.32UniSTS
D8S2279  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map21q22.12UniSTS
Cytogenetic Map15q13UniSTS
Cytogenetic Map9q32UniSTS
Cytogenetic Map15q22.3UniSTS
Cytogenetic Map17p12UniSTS
Cytogenetic Map21q21.3UniSTS
Cytogenetic Map3p22-p21.3UniSTS
Cytogenetic Map1q21.1UniSTS
Cytogenetic Map2q24.2UniSTS
Cytogenetic Map17q24.2UniSTS
Cytogenetic Map1q32UniSTS
Cytogenetic Map3p25.3UniSTS
Cytogenetic Map20q13.3UniSTS
Cytogenetic Map2q31.1UniSTS
Cytogenetic Map1q21UniSTS
Cytogenetic Map3p14.1UniSTS
Cytogenetic Map2q37.3UniSTS
Cytogenetic Map7p14.1UniSTS
Cytogenetic Map2q22.3UniSTS
Cytogenetic Map15q13.2UniSTS
Cytogenetic Map12q24.1UniSTS
Cytogenetic Map7p15.2UniSTS
Cytogenetic Map5q31.2UniSTS
Cytogenetic Map2p25.2UniSTS
Cytogenetic Map3p24.3UniSTS
Cytogenetic Map17q25.3UniSTS
Cytogenetic Map15q22.31UniSTS
Cytogenetic Map5q14UniSTS
Cytogenetic Map5q31UniSTS
Cytogenetic Map1p36.32UniSTS
Cytogenetic Map1q42.12UniSTS
Cytogenetic Map7q21.11UniSTS
Cytogenetic Map9q34.2UniSTS
Cytogenetic Map19q13.3UniSTS
Cytogenetic Map22q13.33UniSTS
Cytogenetic Map8q22.3UniSTS
Cytogenetic Map6p21.1-p12UniSTS
Cytogenetic Map1p36.13UniSTS
Cytogenetic Map7q36.3UniSTS
Cytogenetic Map2p25.1UniSTS
Cytogenetic Map7p21.3UniSTS
Cytogenetic Map4q12UniSTS
Cytogenetic Map22q11.22UniSTS
Cytogenetic Map11p13UniSTS
Cytogenetic Map1q12UniSTS
Cytogenetic Map8p23UniSTS
Cytogenetic Map11q13.2-q13.3UniSTS
Cytogenetic Map13q14.1-q14.3UniSTS
Cytogenetic Map3q22-q24UniSTS
Cytogenetic Map3q13.1-q13.2UniSTS
Cytogenetic Map16q24UniSTS
Cytogenetic Map5q23.3-q31.1UniSTS
Cytogenetic Map8p21.3UniSTS
Cytogenetic Map14q32.3UniSTS
Cytogenetic Map7q11.23UniSTS
Cytogenetic Map7q32UniSTS
Cytogenetic Map14q32.33UniSTS
Cytogenetic Map19p13.2UniSTS
Cytogenetic Map9q34.3UniSTS
Cytogenetic Map1p32.3UniSTS
Cytogenetic Map17q11UniSTS
Cytogenetic Map17p13.1-p12UniSTS
Cytogenetic Map18q21.33UniSTS
Cytogenetic Map19p13.12UniSTS
Cytogenetic Map5q14.1UniSTS
Cytogenetic Map14q24.3UniSTS
Cytogenetic Map1q21-q23UniSTS
Cytogenetic MapXp11.23UniSTS
Cytogenetic Map4q21.1UniSTS
Cytogenetic Map12q13.13UniSTS
Cytogenetic Map14q23.3UniSTS
Cytogenetic Map17p12-p11.2UniSTS
Cytogenetic Map6p21.1UniSTS
Cytogenetic Map1q24UniSTS
Cytogenetic Map1q43UniSTS
Cytogenetic Map9q34.13UniSTS
Cytogenetic Map19q13.4UniSTS
Cytogenetic Map2q32UniSTS
Cytogenetic MapXp22.2UniSTS
Cytogenetic Map19p13.11UniSTS
Cytogenetic Map2q33UniSTS
Cytogenetic Map10p13UniSTS
Cytogenetic Map2q11.2UniSTS
Cytogenetic Map3q27UniSTS
Cytogenetic Map17q25.1UniSTS
Cytogenetic Map4p16.1UniSTS
Cytogenetic Map14q22.3UniSTS
Cytogenetic Map10q23-q24UniSTS
Cytogenetic Map2q37.1UniSTS
Cytogenetic Map17q12UniSTS
Cytogenetic Map14q31-q32UniSTS
Cytogenetic Map5p15.33UniSTS
Cytogenetic Map1q23.2UniSTS
Cytogenetic Map16q24.3UniSTS
Cytogenetic Map4p14UniSTS
Cytogenetic Map2q32.3UniSTS
Cytogenetic Map15q21.1UniSTS
Cytogenetic Map4q32.2UniSTS
Cytogenetic Map10q23UniSTS
Cytogenetic Map5q14.2UniSTS
Cytogenetic Map4q32.1UniSTS
Cytogenetic Map1q25.1UniSTS
Cytogenetic Map11q14.1UniSTS
Cytogenetic Map4p16.3UniSTS
Cytogenetic Map1p34.2UniSTS
Cytogenetic Map11q23.1UniSTS
Cytogenetic Map3p21.1UniSTS
Cytogenetic Map16q22.2UniSTS
Cytogenetic Map14q32.31UniSTS
Cytogenetic Map16q11.2UniSTS
Cytogenetic Map6q22UniSTS
Cytogenetic Map10p15.3UniSTS
Cytogenetic Map11q23UniSTS
Cytogenetic Map22q13.2UniSTS
Cytogenetic Map12q12UniSTS
Cytogenetic Map19q13.42UniSTS
Cytogenetic Map19q13.11UniSTS
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Cytogenetic Map17q11.1UniSTS
Cytogenetic Map15q25.1UniSTS
Cytogenetic Map13q12.3UniSTS
Cytogenetic Map12q23.2UniSTS
Cytogenetic Map12q12-q13UniSTS
Cytogenetic Map12q14UniSTS
Cytogenetic Map5q33.1UniSTS
Cytogenetic Map2q32-q34UniSTS
Cytogenetic Map16q22.3UniSTS
Cytogenetic Map2p15-p13UniSTS
Cytogenetic MapXp11.4UniSTS
Cytogenetic Map19q13.33-q13.41UniSTS
Cytogenetic Map20p11UniSTS
Cytogenetic Map6q23-q24UniSTS
Cytogenetic Map2p12UniSTS
Cytogenetic Map2p13UniSTS
Cytogenetic Map13q11-q12UniSTS
Cytogenetic Map6p12.3-p11.2UniSTS
Cytogenetic Map6q16.1-q16.3UniSTS
Cytogenetic Map22q11UniSTS
Cytogenetic Map7q31.2UniSTS
Cytogenetic Map10q21.3UniSTS
Cytogenetic Map3q25.2UniSTS
Cytogenetic Map3p21.1-p14.3UniSTS
Cytogenetic Map6p12.1UniSTS
Cytogenetic Map3q23-q24UniSTS
Cytogenetic Map3q12UniSTS
Cytogenetic Map7q11.1UniSTS
Cytogenetic Map3q22.3UniSTS
Cytogenetic Map7q21.3UniSTS
Cytogenetic Map4q31.1UniSTS
Cytogenetic Map22q12-q13UniSTS
Cytogenetic Map4q23UniSTS
Cytogenetic MapXp22.12UniSTS
Cytogenetic Map6q16.1UniSTS
Cytogenetic Map13q14.13UniSTS
Cytogenetic Map18q21.3UniSTS
Cytogenetic Map9q33.2UniSTS
Cytogenetic Map11q21UniSTS
Cytogenetic Map8q12UniSTS
Cytogenetic Map4q28-q32UniSTS
Cytogenetic Map17q24.3UniSTS
Cytogenetic Map6p23UniSTS
Cytogenetic Map8p11UniSTS
Cytogenetic Map5q34UniSTS
Cytogenetic Map1q24.3UniSTS
Cytogenetic Map9q33.1UniSTS
Cytogenetic Map1q23.3UniSTS
Cytogenetic Map2p16.2UniSTS
Cytogenetic Map9q22.31UniSTS
Cytogenetic Map9p24.3UniSTS
Cytogenetic Map7q35UniSTS
Cytogenetic Map1p36.2UniSTS
Cytogenetic Map11q22.3UniSTS
Cytogenetic Map16p12UniSTS
Cytogenetic Map1q22-q23UniSTS
Cytogenetic Map13q22.1UniSTS
Cytogenetic Map2q12.2UniSTS
Cytogenetic Map8p12UniSTS
Cytogenetic Map4q21UniSTS
Cytogenetic Map13q12.2UniSTS
Cytogenetic Map9q31-q33UniSTS
Cytogenetic Map6p24.1UniSTS
Cytogenetic Map1q23UniSTS
Cytogenetic Map11q12-q13UniSTS
Cytogenetic Map11q13.3UniSTS
Cytogenetic Map11q24.2UniSTS
Cytogenetic Map11q12.1UniSTS
Cytogenetic Map3p26UniSTS
Cytogenetic Map5q13UniSTS
Cytogenetic Map8p21UniSTS
Cytogenetic Map19q13.1-q13.2UniSTS
Cytogenetic Map1p33-p32UniSTS
Cytogenetic Map7q36.2UniSTS
Cytogenetic Map4q32.3UniSTS
Cytogenetic Map16p13.2UniSTS
Cytogenetic Map14q32UniSTS
Cytogenetic Map10q11.23UniSTS
Cytogenetic Map10q26.1UniSTS
Cytogenetic Map9q32-q33.3UniSTS
Cytogenetic Map9q22.1-q22.2UniSTS
Cytogenetic Map3q26.1-q26.2UniSTS
Cytogenetic Map5q31-q34UniSTS
Cytogenetic Map9q33-q34UniSTS
Cytogenetic Map5q11.2-q13.2UniSTS
Cytogenetic Map13q32UniSTS
Cytogenetic Map9q22.32UniSTS
Cytogenetic Map1p36.3UniSTS
Cytogenetic Map1p36.3-p36.2UniSTS
Cytogenetic Map4q28.1UniSTS
Cytogenetic Map5q22UniSTS
Cytogenetic Map12p11.21UniSTS
Cytogenetic MapXq13.3UniSTS
Cytogenetic Map9q31.3UniSTS
Cytogenetic Map3p26.3UniSTS
Cytogenetic Map2q11.1UniSTS
Cytogenetic Map21q11.2UniSTS
Cytogenetic Map18q21.32UniSTS
Cytogenetic Map15q26.2UniSTS
Cytogenetic Map12q24.23UniSTS
Cytogenetic Map10q25.3UniSTS
Cytogenetic Map20q11.23UniSTS
Cytogenetic Map20p12.1UniSTS
Cytogenetic Map2q31.1-q31.2UniSTS
Cytogenetic MapXp22.31UniSTS
Cytogenetic MapXp21.3UniSTS
Cytogenetic Map5q33.3UniSTS
Cytogenetic Map4q28.2UniSTS
Cytogenetic Map3p14.2UniSTS
Cytogenetic Map3q24UniSTS
Cytogenetic Map2q13UniSTS
Cytogenetic Map20q13.2UniSTS
Cytogenetic Map14q11.2-q12UniSTS
Cytogenetic Map3p24UniSTS
Cytogenetic Map12q23.3UniSTS
Cytogenetic Map11q24.3UniSTS
Cytogenetic Map11q14.3UniSTS
Cytogenetic Map10q25.2UniSTS
Cytogenetic Map3q25.1UniSTS
Cytogenetic Map8q13UniSTS
Cytogenetic Map1p22.2UniSTS
Cytogenetic Map3p22.3UniSTS
Cytogenetic Map18q11.1UniSTS
Cytogenetic Map8q23.3UniSTS
Cytogenetic Map15q24UniSTS
Cytogenetic Map11cen-q12UniSTS
Cytogenetic Map11q25UniSTS
Cytogenetic Map3p22.2UniSTS
Cytogenetic MapXp21.1UniSTS
Cytogenetic Map7q36UniSTS
Cytogenetic Map7p14.3UniSTS
Cytogenetic Map12q21UniSTS
Cytogenetic Map7p15UniSTS
Cytogenetic Map7q22-q31UniSTS
Cytogenetic Map11q22UniSTS
Cytogenetic Map5p15.3UniSTS
Cytogenetic Map20q13.3-qterUniSTS
Cytogenetic Map1p35-p34UniSTS
Cytogenetic Map4p13-p12UniSTS
Cytogenetic Map10q21-q22UniSTS
Cytogenetic Map4q22UniSTS
Cytogenetic Map7p13-p11.1UniSTS
Cytogenetic Map9q31-q34UniSTS
Cytogenetic Map7q21.1-q22UniSTS
Cytogenetic Map15q26.1UniSTS
Cytogenetic Map3q13.13-q13.2UniSTS
Cytogenetic MapXp22.13UniSTS
Cytogenetic Map13q12.12UniSTS
Cytogenetic Map13q14.2UniSTS
Cytogenetic Map12qUniSTS
Cytogenetic Map1pUniSTS
Cytogenetic Map16pUniSTS
Cytogenetic Map15qUniSTS
Cytogenetic Map7qUniSTS
Cytogenetic Map2qUniSTS
Cytogenetic Map5q13.1UniSTS
Cytogenetic Map11p14.1UniSTS
Cytogenetic Map4q32UniSTS
Cytogenetic Map2p22UniSTS
Cytogenetic Map5q14.3UniSTS
Cytogenetic Map10p12.1UniSTS
Cytogenetic Map5q23.2UniSTS
Cytogenetic Map2p24.1UniSTS
Cytogenetic Map8q24.13UniSTS
Cytogenetic Map12p13.32UniSTS
Cytogenetic Map9p21.1UniSTS
Cytogenetic Map9q34.2-q34.3UniSTS

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2939
Count of miRNA genes:1141
Interacting mature miRNAs:1405
Transcripts:ENST00000264052, ENST00000340126, ENST00000341950, ENST00000409112, ENST00000409341, ENST00000409824, ENST00000409897, ENST00000413284, ENST00000427101, ENST00000431952, ENST00000432979, ENST00000452345, ENST00000459786, ENST00000462751, ENST00000466710, ENST00000470940, ENST00000488180, ENST00000492546, ENST00000494508, ENST00000494901
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High
Medium 2288 2573 1372 403 1832 248 3409 1216 914 245 997 1483 167 1 1202 2083 3 2
Low 150 418 352 220 113 216 767 968 2791 174 453 82 8 2 705 3
Below cutoff 1 2 1 6 1 164 12 24 6 33

Sequence

Nucleotide Sequences
RefSeq Transcripts NG_029842 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001080391 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001206701 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001206702 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001206703 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001206704 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_003113 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AA810108 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC009949 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC010149 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF056322 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF076675 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF146342 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF255565 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF378670 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI886092 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK090565 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK091898 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK126529 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK160379 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK293373 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK304205 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AW978040 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC011562 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471063 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CR749288 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA442074 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA562355 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  L79986 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  L79987 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  L79988 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  L79989 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M60618 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U36501 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X95472 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENST00000264052   ⟹   ENSP00000264052
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl2230,415,942 - 230,516,527 (+)Ensembl
RefSeq Acc Id: ENST00000340126   ⟹   ENSP00000343023
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl2230,416,201 - 230,545,606 (+)Ensembl
RefSeq Acc Id: ENST00000409112   ⟹   ENSP00000386427
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl2230,416,266 - 230,508,146 (+)Ensembl
RefSeq Acc Id: ENST00000409341   ⟹   ENSP00000386404
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl2230,416,247 - 230,470,517 (+)Ensembl
RefSeq Acc Id: ENST00000409824   ⟹   ENSP00000387311
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl2230,416,240 - 230,470,489 (+)Ensembl
RefSeq Acc Id: ENST00000409897   ⟹   ENSP00000386998
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl2230,416,756 - 230,470,530 (+)Ensembl
RefSeq Acc Id: ENST00000413284   ⟹   ENSP00000400277
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl2230,462,435 - 230,470,103 (+)Ensembl
RefSeq Acc Id: ENST00000427101   ⟹   ENSP00000399389
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl2230,416,156 - 230,470,534 (+)Ensembl
RefSeq Acc Id: ENST00000431952   ⟹   ENSP00000393679
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl2230,504,262 - 230,544,090 (+)Ensembl
RefSeq Acc Id: ENST00000432979   ⟹   ENSP00000391616
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl2230,416,221 - 230,449,380 (+)Ensembl
RefSeq Acc Id: ENST00000452345   ⟹   ENSP00000416563
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl2230,462,467 - 230,494,460 (+)Ensembl
RefSeq Acc Id: ENST00000459786
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl2230,504,217 - 230,506,766 (+)Ensembl
RefSeq Acc Id: ENST00000462751
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl2230,463,618 - 230,467,147 (+)Ensembl
RefSeq Acc Id: ENST00000466710
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl2230,449,569 - 230,462,629 (+)Ensembl
RefSeq Acc Id: ENST00000470940
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl2230,449,375 - 230,461,328 (+)Ensembl
RefSeq Acc Id: ENST00000488180
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl2230,537,642 - 230,544,090 (+)Ensembl
RefSeq Acc Id: ENST00000492546
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl2230,473,117 - 230,498,522 (+)Ensembl
RefSeq Acc Id: ENST00000494508
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl2230,468,832 - 230,470,360 (+)Ensembl
RefSeq Acc Id: ENST00000494901
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl2230,508,146 - 230,543,122 (+)Ensembl
RefSeq Acc Id: NM_001080391   ⟹   NP_001073860
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382230,416,201 - 230,545,606 (+)NCBI
GRCh372231,280,871 - 231,410,317 (+)ENTREZGENE
GRCh372231,280,871 - 231,410,317 (+)NCBI
Build 362230,989,115 - 231,118,561 (+)NCBI Archive
HuRef2223,121,005 - 223,250,289 (+)ENTREZGENE
CHM1_12231,286,764 - 231,416,096 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001206701   ⟹   NP_001193630
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382230,416,201 - 230,508,146 (+)NCBI
GRCh372231,280,871 - 231,410,317 (+)NCBI
HuRef2223,121,005 - 223,250,289 (+)ENTREZGENE
CHM1_12231,286,764 - 231,378,696 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001206702   ⟹   NP_001193631
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382230,416,201 - 230,470,530 (+)NCBI
GRCh372231,280,871 - 231,410,317 (+)NCBI
HuRef2223,121,005 - 223,250,289 (+)ENTREZGENE
CHM1_12231,286,764 - 231,340,769 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001206703   ⟹   NP_001193632
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382230,416,201 - 230,470,530 (+)NCBI
GRCh372231,280,871 - 231,410,317 (+)NCBI
HuRef2223,121,005 - 223,250,289 (+)ENTREZGENE
CHM1_12231,286,764 - 231,340,769 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001206704   ⟹   NP_001193633
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382230,416,756 - 230,470,530 (+)NCBI
GRCh372231,280,871 - 231,410,317 (+)NCBI
HuRef2223,121,005 - 223,250,289 (+)ENTREZGENE
CHM1_12231,287,364 - 231,340,769 (+)NCBI
Sequence:
RefSeq Acc Id: NM_003113   ⟹   NP_003104
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382230,416,201 - 230,516,527 (+)NCBI
GRCh372231,280,871 - 231,410,317 (+)ENTREZGENE
GRCh372231,280,871 - 231,410,317 (+)NCBI
Build 362230,989,115 - 231,089,486 (+)NCBI Archive
HuRef2223,121,005 - 223,250,289 (+)ENTREZGENE
CHM1_12231,286,764 - 231,387,085 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001073860 (Get FASTA)   NCBI Sequence Viewer  
  NP_001193630 (Get FASTA)   NCBI Sequence Viewer  
  NP_001193631 (Get FASTA)   NCBI Sequence Viewer  
  NP_001193632 (Get FASTA)   NCBI Sequence Viewer  
  NP_001193633 (Get FASTA)   NCBI Sequence Viewer  
  NP_003104 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA35537 (Get FASTA)   NCBI Sequence Viewer  
  AAC39790 (Get FASTA)   NCBI Sequence Viewer  
  AAC50743 (Get FASTA)   NCBI Sequence Viewer  
  AAF39781 (Get FASTA)   NCBI Sequence Viewer  
  AAF43098 (Get FASTA)   NCBI Sequence Viewer  
  AAH11562 (Get FASTA)   NCBI Sequence Viewer  
  AAK51202 (Get FASTA)   NCBI Sequence Viewer  
  AAK57703 (Get FASTA)   NCBI Sequence Viewer  
  AAL77438 (Get FASTA)   NCBI Sequence Viewer  
  AAL77439 (Get FASTA)   NCBI Sequence Viewer  
  AAL77440 (Get FASTA)   NCBI Sequence Viewer  
  AAL77441 (Get FASTA)   NCBI Sequence Viewer  
  AAX88870 (Get FASTA)   NCBI Sequence Viewer  
  AAY14879 (Get FASTA)   NCBI Sequence Viewer  
  BAD18722 (Get FASTA)   NCBI Sequence Viewer  
  BAG56886 (Get FASTA)   NCBI Sequence Viewer  
  BAG65081 (Get FASTA)   NCBI Sequence Viewer  
  CAA64744 (Get FASTA)   NCBI Sequence Viewer  
  CAH18143 (Get FASTA)   NCBI Sequence Viewer  
  EAW70927 (Get FASTA)   NCBI Sequence Viewer  
  EAW70928 (Get FASTA)   NCBI Sequence Viewer  
  EAW70929 (Get FASTA)   NCBI Sequence Viewer  
  P23497 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001073860   ⟸   NM_001080391
- Peptide Label: isoform 1
- UniProtKB: P23497 (UniProtKB/Swiss-Prot),   Q6ZMK3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_003104   ⟸   NM_003113
- Peptide Label: isoform 2
- UniProtKB: P23497 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001193630   ⟸   NM_001206701
- Peptide Label: isoform 3
- UniProtKB: P23497 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001193631   ⟸   NM_001206702
- Peptide Label: isoform 4
- UniProtKB: P23497 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001193632   ⟸   NM_001206703
- Peptide Label: isoform 5
- UniProtKB: P23497 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001193633   ⟸   NM_001206704
- Peptide Label: isoform 6
- UniProtKB: P23497 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSP00000400277   ⟸   ENST00000413284
RefSeq Acc Id: ENSP00000416563   ⟸   ENST00000452345
RefSeq Acc Id: ENSP00000399389   ⟸   ENST00000427101
RefSeq Acc Id: ENSP00000393679   ⟸   ENST00000431952
RefSeq Acc Id: ENSP00000343023   ⟸   ENST00000340126
RefSeq Acc Id: ENSP00000391616   ⟸   ENST00000432979
RefSeq Acc Id: ENSP00000387311   ⟸   ENST00000409824
RefSeq Acc Id: ENSP00000386998   ⟸   ENST00000409897
RefSeq Acc Id: ENSP00000386404   ⟸   ENST00000409341
RefSeq Acc Id: ENSP00000386427   ⟸   ENST00000409112
RefSeq Acc Id: ENSP00000264052   ⟸   ENST00000264052
Protein Domains
HMG box   HSR   PHD-type   SAND

Promoters
RGD ID:6863046
Promoter ID:EPDNEW_H4688
Type:initiation region
Name:SP100_1
Description:SP100 nuclear antigen
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh382230,416,220 - 230,416,280EPDNEW
RGD ID:6811972
Promoter ID:HG_ACW:47783
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Lymphoblastoid
Transcripts:SP100ANDHMG1L3.HAPR07
Position:
Human AssemblyChrPosition (strand)Source
Build 362230,984,551 - 230,985,051 (+)MPROMDB
RGD ID:6798227
Promoter ID:HG_KWN:37633
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   HeLa_S3,   Jurkat,   K562,   Lymphoblastoid,   NB4
Transcripts:ENST00000341950,   ENST00000409897,   NM_001080391,   OTTHUMT00000256914,   OTTHUMT00000332254,   UC002VQQ.1,   UC002VQR.1,   UC002VQS.2
Position:
Human AssemblyChrPosition (strand)Source
Build 362230,989,001 - 230,989,501 (+)MPROMDB
RGD ID:6851978
Promoter ID:EP73795
Type:multiple initiation site
Name:HS_SP100
Description:Nuclear antigen Sp100.
SO ACC ID:SO:0000170
Source:EPD (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:NEDO full length human cDNA sequencing project.; Oligo-capping
Position:
Human AssemblyChrPosition (strand)Source
Build 362230,989,179 - 230,989,239EPD
RGD ID:6798224
Promoter ID:HG_KWN:37634
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Lymphoblastoid
Transcripts:OTTHUMT00000332255,   OTTHUMT00000332256
Position:
Human AssemblyChrPosition (strand)Source
Build 362231,021,676 - 231,022,777 (+)MPROMDB
RGD ID:6798226
Promoter ID:HG_KWN:37635
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Lymphoblastoid
Transcripts:OTTHUMT00000332258
Position:
Human AssemblyChrPosition (strand)Source
Build 362231,034,101 - 231,034,601 (+)MPROMDB
RGD ID:6798228
Promoter ID:HG_KWN:37636
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Lymphoblastoid
Transcripts:OTTHUMT00000332260,   OTTHUMT00000332261
Position:
Human AssemblyChrPosition (strand)Source
Build 362231,034,511 - 231,035,412 (+)MPROMDB
RGD ID:6798225
Promoter ID:HG_KWN:37637
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Lymphoblastoid
Transcripts:OTTHUMT00000332257
Position:
Human AssemblyChrPosition (strand)Source
Build 362231,036,764 - 231,037,264 (+)MPROMDB
RGD ID:6798230
Promoter ID:HG_KWN:37638
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Lymphoblastoid
Transcripts:OTTHUMT00000332259
Position:
Human AssemblyChrPosition (strand)Source
Build 362231,040,621 - 231,041,121 (+)MPROMDB
RGD ID:6798231
Promoter ID:HG_KWN:37639
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   K562,   Lymphoblastoid
Transcripts:OTTHUMT00000332263
Position:
Human AssemblyChrPosition (strand)Source
Build 362231,045,096 - 231,046,527 (+)MPROMDB
RGD ID:6798229
Promoter ID:HG_KWN:37640
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Lymphoblastoid
Transcripts:OTTHUMT00000332262,   UC010FXP.1
Position:
Human AssemblyChrPosition (strand)Source
Build 362231,077,221 - 231,077,721 (+)MPROMDB
RGD ID:6798222
Promoter ID:HG_KWN:37642
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Lymphoblastoid
Transcripts:OTTHUMT00000332251
Position:
Human AssemblyChrPosition (strand)Source
Build 362231,080,621 - 231,082,872 (+)MPROMDB
RGD ID:6798223
Promoter ID:HG_KWN:37644
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Lymphoblastoid
Transcripts:OTTHUMT00000332253
Position:
Human AssemblyChrPosition (strand)Source
Build 362231,110,561 - 231,112,267 (+)MPROMDB

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 2q32.3-37.3(chr2:194898783-236473913)x3 copy number gain See cases [RCV000051119] Chr2:194898783..236473913 [GRCh38]
Chr2:195763507..237382556 [GRCh37]
Chr2:195471752..237047295 [NCBI36]
Chr2:2q32.3-37.3
pathogenic
GRCh38/hg38 2q36.3-37.3(chr2:226978129-236886599)x1 copy number loss See cases [RCV000052637] Chr2:226978129..236886599 [GRCh38]
Chr2:227842845..237795242 [GRCh37]
Chr2:227551089..237459981 [NCBI36]
Chr2:2q36.3-37.3
pathogenic
GRCh38/hg38 2q36.3-37.2(chr2:227343278-235339168)x1 copy number loss See cases [RCV000052638] Chr2:227343278..235339168 [GRCh38]
Chr2:228207994..236247812 [GRCh37]
Chr2:227916238..235912551 [NCBI36]
Chr2:2q36.3-37.2
pathogenic
GRCh38/hg38 2q32.2-37.3(chr2:188818195-242065208)x3 copy number gain See cases [RCV000052958] Chr2:188818195..242065208 [GRCh38]
Chr2:189682921..243007359 [GRCh37]
Chr2:189391166..242656032 [NCBI36]
Chr2:2q32.2-37.3
pathogenic
GRCh38/hg38 2q32.2-37.3(chr2:190310736-241892770)x3 copy number gain See cases [RCV000052959] Chr2:190310736..241892770 [GRCh38]
Chr2:191175462..242834921 [GRCh37]
Chr2:190883707..242483594 [NCBI36]
Chr2:2q32.2-37.3
pathogenic
GRCh38/hg38 2q32.3-37.3(chr2:193122313-241074980)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052960]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052960]|See cases [RCV000052960] Chr2:193122313..241074980 [GRCh38]
Chr2:193987039..242014395 [GRCh37]
Chr2:193695284..241663068 [NCBI36]
Chr2:2q32.3-37.3
pathogenic
GRCh38/hg38 2q36.1-37.3(chr2:223992431-242126245)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052972]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052972]|See cases [RCV000052972] Chr2:223992431..242126245 [GRCh38]
Chr2:224857148..243059659 [GRCh37]
Chr2:224565392..242717069 [NCBI36]
Chr2:2q36.1-37.3
pathogenic
GRCh38/hg38 2q36.3-37.3(chr2:227803148-242086301)x3 copy number gain See cases [RCV000052973] Chr2:227803148..242086301 [GRCh38]
Chr2:228667864..243028452 [GRCh37]
Chr2:228376108..242677125 [NCBI36]
Chr2:2q36.3-37.3
pathogenic
GRCh38/hg38 2q36.3-37.3(chr2:228723579-241404867)x3 copy number gain See cases [RCV000134169] Chr2:228723579..241404867 [GRCh38]
Chr2:229588295..242344282 [GRCh37]
Chr2:229296539..241992955 [NCBI36]
Chr2:2q36.3-37.3
pathogenic
GRCh38/hg38 2q37.1(chr2:230385715-230513525)x3 copy number gain See cases [RCV000134236] Chr2:230385715..230513525 [GRCh38]
Chr2:231250430..231378240 [GRCh37]
Chr2:230958674..231086484 [NCBI36]
Chr2:2q37.1
benign
GRCh37/hg19 2q36.3-37.1(chr2:230411764-232019784)x1 copy number loss not specified [RCV000515677] Chr2:230411764..232019784 [GRCh37]
Chr2:2q36.3-37.1
uncertain significance
GRCh38/hg38 2q34-37.3(chr2:210579676-242126245)x3 copy number gain See cases [RCV000135934] Chr2:210579676..242126245 [GRCh38]
Chr2:211444400..243059659 [GRCh37]
Chr2:211152645..242717069 [NCBI36]
Chr2:2q34-37.3
pathogenic
GRCh38/hg38 2q36.3-37.2(chr2:228014149-234976424)x3 copy number gain See cases [RCV000136967] Chr2:228014149..234976424 [GRCh38]
Chr2:228878865..235885068 [GRCh37]
Chr2:228587109..235549807 [NCBI36]
Chr2:2q36.3-37.2
pathogenic
GRCh38/hg38 2q32.2-37.3(chr2:189436149-241841232)x3 copy number gain See cases [RCV000142307] Chr2:189436149..241841232 [GRCh38]
Chr2:190300875..242783384 [GRCh37]
Chr2:190009120..242432057 [NCBI36]
Chr2:2q32.2-37.3
pathogenic
GRCh38/hg38 2q35-37.3(chr2:218101759-242126245)x3 copy number gain See cases [RCV000143216] Chr2:218101759..242126245 [GRCh38]
Chr2:218966482..243059659 [GRCh37]
Chr2:218674727..242717069 [NCBI36]
Chr2:2q35-37.3
pathogenic
GRCh37/hg19 2p25.3-q37.3(chr2:14238-243048760)x3 copy number gain not provided [RCV000752802] Chr2:14238..243048760 [GRCh37]
Chr2:2p25.3-q37.3
pathogenic
GRCh37/hg19 2q35-37.3(chr2:219966808-237815985)x3 copy number gain See cases [RCV000448049] Chr2:219966808..237815985 [GRCh37]
Chr2:2q35-37.3
pathogenic
GRCh37/hg19 2q36.1-37.1(chr2:223378640-232061074)x1 copy number loss See cases [RCV000448773] Chr2:223378640..232061074 [GRCh37]
Chr2:2q36.1-37.1
likely pathogenic
GRCh37/hg19 2p25.3-q37.3(chr2:12771-242783384) copy number gain See cases [RCV000512056] Chr2:12771..242783384 [GRCh37]
Chr2:2p25.3-q37.3
pathogenic
GRCh37/hg19 2q36.1-37.3(chr2:222077224-239394441)x3 copy number gain See cases [RCV000511816] Chr2:222077224..239394441 [GRCh37]
Chr2:2q36.1-37.3
pathogenic
GRCh37/hg19 2q36.3-37.1(chr2:230491213-231404389)x1 copy number loss See cases [RCV000511869] Chr2:230491213..231404389 [GRCh37]
Chr2:2q36.3-37.1
likely pathogenic
GRCh37/hg19 2q34-37.3(chr2:213518431-242783384)x3 copy number gain See cases [RCV000512009] Chr2:213518431..242783384 [GRCh37]
Chr2:2q34-37.3
pathogenic
GRCh37/hg19 2p25.3-q37.3(chr2:12771-242783384)x3 copy number gain See cases [RCV000511212] Chr2:12771..242783384 [GRCh37]
Chr2:2p25.3-q37.3
pathogenic
GRCh37/hg19 2q35-37.3(chr2:219225872-242016876)x3 copy number gain not provided [RCV000682170] Chr2:219225872..242016876 [GRCh37]
Chr2:2q35-37.3
pathogenic
GRCh37/hg19 2p25.3-q37.3(chr2:15672-243101834)x3 copy number gain not provided [RCV000752804] Chr2:15672..243101834 [GRCh37]
Chr2:2p25.3-q37.3
pathogenic
GRCh37/hg19 2q36.3-37.1(chr2:228966709-231528909)x1 copy number loss not provided [RCV000740932] Chr2:228966709..231528909 [GRCh37]
Chr2:2q36.3-37.1
pathogenic
NM_001080391.2(SP100):c.1008C>T (p.Asp336=) single nucleotide variant not provided [RCV000951244] Chr2:230462469 [GRCh38]
Chr2:231327184 [GRCh37]
Chr2:2q37.1
benign
GRCh37/hg19 2q34-37.3(chr2:210779657-239879183)x3 copy number gain See cases [RCV000790568] Chr2:210779657..239879183 [GRCh37]
Chr2:2q34-37.3
pathogenic
GRCh37/hg19 2q36.3-37.3(chr2:230814690-242783384)x3 copy number gain not provided [RCV001007519] Chr2:230814690..242783384 [GRCh37]
Chr2:2q36.3-37.3
pathogenic
NM_001080391.2(SP100):c.875G>A (p.Arg292Gln) single nucleotide variant not provided [RCV000961033] Chr2:230461316 [GRCh38]
Chr2:231326031 [GRCh37]
Chr2:2q37.1
likely benign
GRCh37/hg19 2q31.2-37.3(chr2:178397959-243007457)x3 copy number gain See cases [RCV001263052] Chr2:178397959..243007457 [GRCh37]
Chr2:2q31.2-37.3
pathogenic

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:11206 AgrOrtholog
COSMIC SP100 COSMIC
Ensembl Genes ENSG00000067066 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSP00000264052 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSP00000343023 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSP00000386404 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSP00000386427 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSP00000386998 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSP00000387311 UniProtKB/TrEMBL
  ENSP00000391616 UniProtKB/TrEMBL
  ENSP00000393679 UniProtKB/TrEMBL
  ENSP00000399389 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSP00000400277 UniProtKB/TrEMBL
  ENSP00000416563 UniProtKB/TrEMBL
Ensembl Transcript ENST00000264052 ENTREZGENE, UniProtKB/Swiss-Prot
  ENST00000340126 ENTREZGENE, UniProtKB/Swiss-Prot
  ENST00000409112 ENTREZGENE, UniProtKB/Swiss-Prot
  ENST00000409341 ENTREZGENE, UniProtKB/Swiss-Prot
  ENST00000409824 UniProtKB/TrEMBL
  ENST00000409897 ENTREZGENE, UniProtKB/Swiss-Prot
  ENST00000413284 UniProtKB/TrEMBL
  ENST00000427101 ENTREZGENE, UniProtKB/Swiss-Prot
  ENST00000431952 UniProtKB/TrEMBL
  ENST00000432979 UniProtKB/TrEMBL
  ENST00000452345 UniProtKB/TrEMBL
Gene3D-CATH 1.10.30.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  1.20.920.10 UniProtKB/TrEMBL
  3.10.390.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000067066 GTEx
HGNC ID HGNC:11206 ENTREZGENE
Human Proteome Map SP100 Human Proteome Map
InterPro Bromodomain UniProtKB/TrEMBL
  Bromodomain-like_sf UniProtKB/TrEMBL
  HMG_box_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HMG_box_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HSR_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SAND-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SAND_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Sp110/Sp140/Sp140L UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Zinc_finger_PHD-type_CS UniProtKB/TrEMBL
  Znf_FYVE_PHD UniProtKB/TrEMBL
  Znf_PHD UniProtKB/TrEMBL
  Znf_PHD-finger UniProtKB/TrEMBL
KEGG Report hsa:6672 UniProtKB/Swiss-Prot
NCBI Gene 6672 ENTREZGENE
OMIM 604585 OMIM
PANTHER PTHR46386 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Bromodomain UniProtKB/TrEMBL
  HMG_box UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HMG_box_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HSR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SAND UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA36043 PharmGKB
PROSITE HMG_BOX_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HSR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SAND UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZF_PHD_1 UniProtKB/TrEMBL
  ZF_PHD_2 UniProtKB/TrEMBL
SMART BROMO UniProtKB/TrEMBL
  HMG UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PHD UniProtKB/TrEMBL
  SAND UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP Bromodomain UniProtKB/TrEMBL
  FYVE_PHD_ZnF UniProtKB/TrEMBL
  SSF47095 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF63763 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniGene Hs.369056 ENTREZGENE
UniProt C9JBL0_HUMAN UniProtKB/TrEMBL
  E9PHV6_HUMAN UniProtKB/TrEMBL
  H0Y4R8_HUMAN UniProtKB/TrEMBL
  H7C1G8_HUMAN UniProtKB/TrEMBL
  H7C4B4_HUMAN UniProtKB/TrEMBL
  P23497 ENTREZGENE
  Q4ZG64_HUMAN UniProtKB/TrEMBL
  Q53TD0_HUMAN UniProtKB/TrEMBL
  Q6ZMK3 ENTREZGENE, UniProtKB/TrEMBL
  Q9P0W1_HUMAN UniProtKB/TrEMBL
  SP100_HUMAN UniProtKB/Swiss-Prot
UniProt Secondary B4DDX5 UniProtKB/Swiss-Prot
  B8ZZD8 UniProtKB/Swiss-Prot
  E7EUA7 UniProtKB/Swiss-Prot
  E9PH61 UniProtKB/Swiss-Prot
  F8WFE2 UniProtKB/Swiss-Prot
  O75450 UniProtKB/Swiss-Prot
  Q13343 UniProtKB/Swiss-Prot
  Q8TE34 UniProtKB/Swiss-Prot
  Q96F70 UniProtKB/Swiss-Prot
  Q96T24 UniProtKB/Swiss-Prot
  Q96T95 UniProtKB/Swiss-Prot
  Q9NP33 UniProtKB/Swiss-Prot
  Q9UE32 UniProtKB/Swiss-Prot