KMT2A (lysine methyltransferase 2A) - Rat Genome Database

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Gene: KMT2A (lysine methyltransferase 2A) Homo sapiens
Analyze
Symbol: KMT2A
Name: lysine methyltransferase 2A
RGD ID: 1347719
HGNC Page HGNC:7132
Description: Enables several functions, including lysine-acetylated histone binding activity; protein homodimerization activity; and protein methyltransferase activity. Involved in several processes, including histone modification; positive regulation of transporter activity; and regulation of nucleobase-containing compound metabolic process. Located in cytosol and nucleoplasm. Part of MLL1 complex. Implicated in acute biphenotypic leukemia; acute myeloid leukemia; cervical cancer; and non-Hodgkin lymphoma. Biomarker of prostate cancer.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: Acute lymphocytic 1; ALL-1; ALL1; CDK6/MLL fusion protein; CXXC-type zinc finger protein 7; CXXC7; FLJ11783; histone-lysine N-methyltransferase 2A; histone-lysine N-methyltransferase MLL; HRX; HTRX; HTRX1; hypothetical protein FLJ11783; lysine (K)-specific methyltransferase 2A; lysine N-methyltransferase 2A; mixed lineage leukemia 1; MLL; MLL-AF4 der(11) fusion protein; MLL-AF9; MLL/GAS7; MLL/GAS7 fusion protein; MLL/GMPS fusion protein; MLL1; MLL1A; myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); myeloid/lymphoid or mixed-lineage leukemia protein 1; TET1-MLL; trithorax-like protein; TRX1; WDSTS; zinc finger protein HRX
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811118,436,492 - 118,526,832 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl11118,436,456 - 118,526,832 (+)EnsemblGRCh38hg38GRCh38
GRCh3711118,307,207 - 118,397,547 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3611117,812,415 - 117,901,146 (+)NCBINCBI36Build 36hg18NCBI36
Build 3411117,812,414 - 117,901,146NCBI
Celera11115,467,997 - 115,556,730 (+)NCBICelera
Cytogenetic Map11q23.3NCBI
HuRef11114,244,065 - 114,334,229 (+)NCBIHuRef
CHM1_111118,193,852 - 118,284,190 (+)NCBICHM1_1
T2T-CHM13v2.011118,455,794 - 118,546,121 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
17beta-estradiol  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
2,4-dinitrotoluene  (ISO)
2,6-dinitrotoluene  (ISO)
2-hydroxypropanoic acid  (EXP)
4,4'-sulfonyldiphenol  (ISO)
4-octylphenol  (EXP)
aflatoxin B1  (EXP,ISO)
all-trans-retinoic acid  (EXP)
amphetamine  (ISO)
arsenite(3-)  (EXP)
arsenous acid  (EXP)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (EXP)
benzo[e]pyrene  (EXP)
bisphenol A  (EXP,ISO)
bortezomib  (EXP)
butanal  (EXP)
cadmium atom  (EXP)
chlorpyrifos  (EXP)
cisplatin  (EXP)
cladribine  (EXP)
clozapine  (EXP,ISO)
cobalt atom  (EXP)
cobalt dichloride  (EXP)
copper(II) sulfate  (EXP)
crotonaldehyde  (EXP)
Cuprizon  (ISO)
cytarabine  (EXP)
deoxynivalenol  (EXP)
diarsenic trioxide  (EXP)
diazinon  (EXP)
dibutyl phthalate  (ISO)
dicrotophos  (EXP)
diethylstilbestrol  (EXP)
dorsomorphin  (EXP)
doxorubicin  (EXP)
endosulfan  (ISO)
enzyme inhibitor  (EXP)
ethanol  (EXP,ISO)
etoposide  (EXP)
fenthion  (ISO)
formaldehyde  (EXP)
geldanamycin  (EXP)
genistein  (EXP)
gentamycin  (ISO)
haloperidol  (ISO)
kaempferol  (EXP)
malathion  (EXP)
methapyrilene  (EXP)
methidathion  (ISO)
methylmercury chloride  (EXP)
morphine  (ISO)
N-acetyl-L-cysteine  (EXP)
nickel dichloride  (EXP,ISO)
Nonylphenol  (EXP)
ozone  (ISO)
p-chloromercuribenzoic acid  (EXP)
paracetamol  (EXP,ISO)
permethrin  (EXP)
phenylmercury acetate  (EXP)
pirinixic acid  (ISO)
potassium chloride  (ISO)
prednisolone  (EXP)
pyrvinium  (ISO)
quercetin  (EXP)
rac-lactic acid  (EXP)
SB 431542  (EXP)
silicon dioxide  (EXP)
sodium arsenate  (ISO)
testosterone enanthate  (EXP)
thimerosal  (EXP)
thioacetamide  (ISO)
titanium dioxide  (ISO)
torcetrapib  (EXP)
trichostatin A  (EXP)
troglitazone  (ISO)
tungsten  (ISO)
valdecoxib  (ISO)
valproic acid  (EXP,ISO)
vinclozolin  (ISO)
vorinostat  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
anterior/posterior pattern specification  (IEA,ISO)
apoptotic process  (IEA)
chromatin organization  (IEA)
circadian regulation of gene expression  (IEA,ISS)
cognition  (IEA,ISO)
definitive hemopoiesis  (IEA)
DNA methylation  (IEA,ISO)
embryonic hemopoiesis  (IEA,ISO,TAS)
exploration behavior  (IEA,ISO)
fibroblast proliferation  (IEA,ISO)
histone H3-K4 dimethylation  (IDA,IEA)
histone H3-K4 methylation  (IBA,IC,IDA,IEA,IMP)
histone H3-K4 monomethylation  (IDA)
histone H3-K4 trimethylation  (IDA,IEA)
histone H4-K16 acetylation  (IMP)
histone modification  (IEA,IMP)
homeostasis of number of cells within a tissue  (IEA,ISO)
membrane depolarization  (IEA,ISO)
methylation  (IEA)
negative regulation of DNA methylation  (IMP)
negative regulation of fibroblast proliferation  (IEA,ISO)
peptidyl-lysine monomethylation  (IEA,ISO)
positive regulation of DNA-templated transcription  (IBA,IEA,IMP)
positive regulation of histone H3-K4 methylation  (ISS)
positive regulation of transcription by RNA polymerase II  (IDA,IEA,IMP,ISO)
positive regulation of transcription of Notch receptor target  (IEA)
positive regulation of transporter activity  (IMP)
post-embryonic development  (IEA,ISO)
protein-containing complex assembly  (IDA)
regulation of DNA-templated transcription  (IEA)
regulation of gene expression  (IEA,ISO)
regulation of histone H3-K14 acetylation  (ISS)
regulation of histone H3-K27 acetylation  (IEA)
regulation of histone H3-K4 methylation  (IEA)
regulation of histone H3-K9 acetylation  (ISS)
regulation of short-term neuronal synaptic plasticity  (IEA,ISO)
response to light stimulus  (IEA,ISO)
response to potassium ion  (IEA,ISO)
rhythmic process  (IEA)
spleen development  (IEA,ISO)
transcription initiation-coupled chromatin remodeling  (IDA)
visual learning  (IEA,ISO)

Cellular Component
cytosol  (IDA)
histone methyltransferase complex  (IBA,IDA,IEA)
MLL1 complex  (IDA,IEA,IPI)
nucleoplasm  (IDA,TAS)
nucleus  (IDA,IEA,NAS)

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
Abnormal corpus callosum morphology  (IAGP)
Abnormality of the dentition  (IAGP)
Abnormality of the elbow  (IAGP)
Accelerated skeletal maturation  (IAGP)
Adrenocortical carcinoma  (IAGP)
Aggressive behavior  (IAGP)
Anxiety  (IAGP)
Aplasia/Hypoplasia of the ribs  (IAGP)
Autism  (IAGP)
Autosomal dominant inheritance  (IAGP)
Behavioral abnormality  (IAGP)
Blepharophimosis  (IAGP)
Broad-based gait  (IAGP)
Clinodactyly of the 5th finger  (IAGP)
Congenital, generalized hypertrichosis  (IAGP)
Constipation  (IAGP)
Decreased response to growth hormone stimulation test  (IAGP)
Delayed gross motor development  (IAGP)
Delayed skeletal maturation  (IAGP)
Delayed speech and language development  (IAGP)
Depressed nasal tip  (IAGP)
Dilatation of renal calices  (IAGP)
Dolichocephaly  (IAGP)
Downslanted palpebral fissures  (IAGP)
Dysphagia  (IAGP)
Epicanthus  (IAGP)
Esophageal atresia  (IAGP)
Facial asymmetry  (IAGP)
Failure to thrive  (IAGP)
Feeding difficulties  (IAGP)
Flat face  (IAGP)
Gastroesophageal reflux  (IAGP)
Generalized hirsutism  (IAGP)
Generalized hypotonia  (IAGP)
Global developmental delay  (IAGP)
High forehead  (IAGP)
High palate  (IAGP)
Hirsutism  (IAGP)
Hyperactivity  (IAGP)
Hyperextensibility at elbow  (IAGP)
Hypertelorism  (IAGP)
Hypotonia  (IAGP)
Intellectual disability  (IAGP)
Intrauterine growth retardation  (IAGP)
Language impairment  (IAGP)
Long eyelashes  (IAGP)
Long philtrum  (IAGP)
Low frustration tolerance  (IAGP)
Low-set ears  (IAGP)
Microcephaly  (IAGP)
Motor stereotypy  (IAGP)
Narrow palpebral fissure  (IAGP)
Pectus excavatum  (IAGP)
Postnatal growth retardation  (IAGP)
Psychomotor deterioration  (IAGP)
Ptosis  (IAGP)
Rhizomelia  (IAGP)
Round face  (IAGP)
Sacral dimple  (IAGP)
Seizure  (IAGP)
Short attention span  (IAGP)
Short middle phalanx of finger  (IAGP)
Short nose  (IAGP)
Short palpebral fissure  (IAGP)
Short stature  (IAGP)
Short toe  (IAGP)
Strabismus  (IAGP)
Synophrys  (IAGP)
Tapered finger  (IAGP)
Telecanthus  (IAGP)
Thick eyebrow  (IAGP)
Thin upper lip vermilion  (IAGP)
Webbed neck  (IAGP)
Wide nasal bridge  (IAGP)
Wide nose  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. Histone methylase MLL1 has critical roles in tumor growth and angiogenesis and its knockdown suppresses tumor growth in vivo. Ansari KI, etal., Oncogene. 2013 Jul 11;32(28):3359-70. doi: 10.1038/onc.2012.352. Epub 2012 Aug 27.
2. Histone lysine methylation dynamics: establishment, regulation, and biological impact. Black JC, etal., Mol Cell. 2012 Nov 30;48(4):491-507. doi: 10.1016/j.molcel.2012.11.006.
3. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
4. ZF-CxxC domain-containing proteins, CpG islands and the chromatin connection. Long HK, etal., Biochem Soc Trans. 2013 Jun;41(3):727-40. doi: 10.1042/BST20130028.
5. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
6. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
9. RGD HPO Phenotype Annotation Pipeline RGD automated import pipeline for human HPO-to-gene-to-disease annotations
10. The COMPASS family of histone H3K4 methylases: mechanisms of regulation in development and disease pathogenesis. Shilatifard A Annu Rev Biochem. 2012;81:65-95. doi: 10.1146/annurev-biochem-051710-134100.
11. Rearrangement of the MLL gene in acute lymphoblastic and acute myeloid leukemias with 11q23 chromosomal translocations. Thirman MJ, etal., N Engl J Med. 1993 Sep 23;329(13):909-14.
12. Deregulated expression of selected histone methylases and demethylases in prostate carcinoma. Vieira FQ, etal., Endocr Relat Cancer. 2013 Dec 16;21(1):51-61. doi: 10.1530/ERC-13-0375. Print 2014 Feb.
Additional References at PubMed
PMID:1303259   PMID:1423624   PMID:1423625   PMID:1720549   PMID:1835902   PMID:7598802   PMID:7689231   PMID:7794749   PMID:8162575   PMID:8219184   PMID:8378076   PMID:8414518  
PMID:8506328   PMID:8630416   PMID:8703835   PMID:8950979   PMID:9129043   PMID:9326653   PMID:9353299   PMID:9477123   PMID:9537414   PMID:9694699   PMID:10490642   PMID:10588740  
PMID:10648423   PMID:10656681   PMID:10706619   PMID:10821850   PMID:10920186   PMID:10995463   PMID:11110714   PMID:11181995   PMID:11259575   PMID:11313484   PMID:11433529   PMID:11733351  
PMID:11809673   PMID:11921290   PMID:11930009   PMID:11943339   PMID:11976948   PMID:12023017   PMID:12034519   PMID:12095151   PMID:12096348   PMID:12123608   PMID:12124344   PMID:12127405  
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PMID:19309322   PMID:19438726   PMID:19454010   PMID:19454493   PMID:19490893   PMID:19528237   PMID:19528532   PMID:19556245   PMID:19631984   PMID:19722759   PMID:19729989   PMID:19763085  
PMID:19818711   PMID:19835597   PMID:19855078   PMID:19940862   PMID:19956635   PMID:19965632   PMID:20010842   PMID:20064463   PMID:20093773   PMID:20113834   PMID:20113838   PMID:20123968  
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PMID:29943896   PMID:29978456   PMID:29997176   PMID:30014449   PMID:30021884   PMID:30089852   PMID:30107050   PMID:30143999   PMID:30203571   PMID:30209403   PMID:30305169   PMID:30352306  
PMID:30387535   PMID:30415952   PMID:30463901   PMID:30503706   PMID:30549396   PMID:30554943   PMID:30575818   PMID:30804502   PMID:30833792   PMID:30899083   PMID:30953031   PMID:31005612  
PMID:31076518   PMID:31090199   PMID:31091453   PMID:31136005   PMID:31202576   PMID:31395602   PMID:31400120   PMID:31405949   PMID:31425921   PMID:31485071   PMID:31527241   PMID:31527615  
PMID:31544921   PMID:31586073   PMID:31592798   PMID:31685992   PMID:31698332   PMID:31705930   PMID:31707119   PMID:31710778   PMID:31714753   PMID:31775036   PMID:31804488   PMID:31852898  
PMID:31855575   PMID:31856871   PMID:31894899   PMID:31913156   PMID:31951812   PMID:32076268   PMID:32114371   PMID:32128942   PMID:32196814   PMID:32203420   PMID:32243611   PMID:32320749  
PMID:32320859   PMID:32345914   PMID:32347296   PMID:32348849   PMID:32376390   PMID:32416067   PMID:32437908   PMID:32519403   PMID:32641752   PMID:32694731   PMID:32744500   PMID:32764680  
PMID:32876512   PMID:33020282   PMID:33022573   PMID:33043602   PMID:33069783   PMID:33201593   PMID:33349639   PMID:33431365   PMID:33472061   PMID:33477970   PMID:33512459   PMID:33581643  
PMID:33606679   PMID:33623141   PMID:33637726   PMID:33640491   PMID:33653378   PMID:33658012   PMID:33783954   PMID:33916271   PMID:33924850   PMID:33961781   PMID:33983906   PMID:34006870  
PMID:34012049   PMID:34039707   PMID:34048072   PMID:34077726   PMID:34079125   PMID:34080665   PMID:34111240   PMID:34228147   PMID:34298117   PMID:34320268   PMID:34349066   PMID:34405474  
PMID:34431785   PMID:34469078   PMID:34489550   PMID:34550633   PMID:34575904   PMID:34588432   PMID:34591430   PMID:34663924   PMID:34698116   PMID:34850113   PMID:34928138   PMID:34933446  
PMID:35013218   PMID:35140242   PMID:35271311   PMID:35462170   PMID:35584376   PMID:35584667   PMID:35617449   PMID:35680797   PMID:35773769   PMID:35893049  


Genomics

Comparative Map Data
KMT2A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811118,436,492 - 118,526,832 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl11118,436,456 - 118,526,832 (+)EnsemblGRCh38hg38GRCh38
GRCh3711118,307,207 - 118,397,547 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3611117,812,415 - 117,901,146 (+)NCBINCBI36Build 36hg18NCBI36
Build 3411117,812,414 - 117,901,146NCBI
Celera11115,467,997 - 115,556,730 (+)NCBICelera
Cytogenetic Map11q23.3NCBI
HuRef11114,244,065 - 114,334,229 (+)NCBIHuRef
CHM1_111118,193,852 - 118,284,190 (+)NCBICHM1_1
T2T-CHM13v2.011118,455,794 - 118,546,121 (+)NCBIT2T-CHM13v2.0
Kmt2a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39944,714,652 - 44,793,492 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl944,714,652 - 44,792,594 (-)EnsemblGRCm39 Ensembl
GRCm38944,803,355 - 44,881,352 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl944,803,355 - 44,881,296 (-)EnsemblGRCm38mm10GRCm38
MGSCv37944,611,438 - 44,689,357 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36944,554,350 - 44,632,269 (-)NCBIMGSCv36mm8
Celera942,068,287 - 42,146,334 (-)NCBICelera
Cytogenetic Map9A5.2NCBI
cM Map924.84NCBI
Kmt2a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2845,116,771 - 45,193,320 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl845,118,814 - 45,193,181 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0849,110,407 - 49,185,872 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl849,114,990 - 49,158,971 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0847,728,915 - 47,804,551 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4847,759,175 - 47,834,586 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera844,701,780 - 44,782,476 (-)NCBICelera
Cytogenetic Map8q22NCBI
Kmt2a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541219,586,141 - 19,665,527 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541219,586,435 - 19,670,149 (+)NCBIChiLan1.0ChiLan1.0
KMT2A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.111117,203,337 - 117,294,755 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11117,204,820 - 117,290,100 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v011113,273,198 - 113,364,404 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
KMT2A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1515,212,559 - 15,302,825 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl515,217,348 - 15,270,971 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha515,263,739 - 15,351,690 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0515,154,723 - 15,242,720 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl515,155,965 - 15,242,720 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1515,293,171 - 15,381,085 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0515,196,657 - 15,284,731 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0515,237,660 - 15,325,572 (-)NCBIUU_Cfam_GSD_1.0
Kmt2a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947100,558,662 - 100,644,258 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365423,480,071 - 3,566,823 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KMT2A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl945,743,397 - 45,824,884 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1945,743,566 - 45,828,559 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2950,878,276 - 50,914,778 (-)NCBISscrofa10.2Sscrofa10.2susScr3
KMT2A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11109,819,748 - 109,912,763 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1109,853,758 - 109,908,113 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604316,125,381 - 16,218,277 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Kmt2a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478413,824,541 - 13,908,077 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478413,824,507 - 13,912,672 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Position Markers
RH44274  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3711118,397,176 - 118,397,296UniSTSGRCh37
Build 3611117,902,386 - 117,902,506RGDNCBI36
Celera11115,557,970 - 115,558,090RGD
Cytogenetic Map11q23.3UniSTS
Cytogenetic Map11q23UniSTS
HuRef11114,333,866 - 114,333,986UniSTS
GeneMap99-GB4 RH Map11380.87UniSTS
STS-T67449  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3711118,394,509 - 118,394,630UniSTSGRCh37
Build 3611117,899,719 - 117,899,840RGDNCBI36
Celera11115,555,303 - 115,555,424RGD
Cytogenetic Map11q23UniSTS
HuRef11114,331,199 - 114,331,320UniSTS
GeneMap99-GB4 RH Map11380.67UniSTS
PMC56962P1  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3711118,355,121 - 118,355,420UniSTSGRCh37
Build 3611117,860,331 - 117,860,630RGDNCBI36
Celera11115,515,911 - 115,516,210RGD
Cytogenetic Map11q23UniSTS
HuRef11114,291,875 - 114,292,174UniSTS
MLL1  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3711118,393,009 - 118,393,211UniSTSGRCh37
Build 3611117,898,219 - 117,898,421RGDNCBI36
Celera11115,553,803 - 115,554,005RGD
Cytogenetic Map11q23UniSTS
HuRef11114,329,699 - 114,329,901UniSTS
GeneMap99-GB4 RH Map11380.67UniSTS
RH16534  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3711118,395,186 - 118,395,335UniSTSGRCh37
Build 3611117,900,396 - 117,900,545RGDNCBI36
Celera11115,555,980 - 115,556,129RGD
Cytogenetic Map11q23UniSTS
HuRef11114,331,876 - 114,332,025UniSTS
GeneMap99-GB4 RH Map11380.57UniSTS
STS-AA009746  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3711118,343,830 - 118,344,065UniSTSGRCh37
Build 3611117,849,040 - 117,849,275RGDNCBI36
Celera11115,504,622 - 115,504,857RGD
Cytogenetic Map11q23UniSTS
HuRef11114,280,586 - 114,280,821UniSTS
GeneMap99-GB4 RH Map11380.57UniSTS
STS-H92945  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3711118,352,671 - 118,352,807UniSTSGRCh37
Build 3611117,857,881 - 117,858,017RGDNCBI36
Celera11115,513,465 - 115,513,601RGD
Cytogenetic Map11q23UniSTS
HuRef11114,289,429 - 114,289,565UniSTS
GeneMap99-GB4 RH Map11380.67UniSTS
RH65355  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3711118,348,708 - 118,348,891UniSTSGRCh37
Build 3611117,853,918 - 117,854,101RGDNCBI36
Celera11115,509,502 - 115,509,685RGD
Cytogenetic Map11q23UniSTS
HuRef11114,285,466 - 114,285,649UniSTS
GeneMap99-GB4 RH Map11376.91UniSTS
RH48277  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3711118,395,778 - 118,395,966UniSTSGRCh37
Build 3611117,900,988 - 117,901,176RGDNCBI36
Celera11115,556,572 - 115,556,760RGD
Cytogenetic Map11q23UniSTS
HuRef11114,332,468 - 114,332,656UniSTS
GeneMap99-GB4 RH Map11380.67UniSTS
MARC_12741-12742:1029349377:1  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3711118,375,858 - 118,376,273UniSTSGRCh37
Build 3611117,881,068 - 117,881,483RGDNCBI36
Celera11115,536,649 - 115,537,064RGD
HuRef11114,312,614 - 114,313,029UniSTS
UniSTS:484385  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3711118,308,122 - 118,309,052UniSTSGRCh37
Celera11115,468,914 - 115,469,844UniSTS
HuRef11114,244,878 - 114,245,808UniSTS

miRNA Target Status

Confirmed Target Of
miRNA GeneMature miRNAMethod NameResult TypeData TypeSupport TypePMID
MIR128-1hsa-miR-128-3pOncomiRDBexternal_infoNANA19749093
MIR193Ahsa-miR-193a-3pMirtarbaseexternal_infoCLASHFunctional MTI (Weak)23622248

Predicted Target Of
Summary Value
Count of predictions:7665
Count of miRNA genes:1435
Interacting mature miRNAs:1954
Transcripts:ENST00000354520, ENST00000389506, ENST00000392873, ENST00000420751, ENST00000525408, ENST00000527839, ENST00000527869, ENST00000528278, ENST00000529852, ENST00000531904, ENST00000532204, ENST00000533790, ENST00000534085, ENST00000534358, ENST00000534678
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High
Medium 1627 1355 1026 150 927 51 3148 806 1885 165 1081 1432 113 1 769 1866 3 2
Low 812 1607 700 474 996 414 1209 1390 1849 254 379 181 62 435 922 3
Below cutoff 29 28 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NG_027813 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001197104 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_005933 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006718839 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011542829 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011542830 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011542831 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011542833 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047426963 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047426964 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB209508 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF024540 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF029700 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF031403 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF035965 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF036405 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF061152 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF061153 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF232000 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF232001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF232002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF272370 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF272371 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF272372 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF272377 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF272378 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF272379 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF272380 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF272381 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF272382 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF487906 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI500057 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ235332 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ235335 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ235336 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ235338 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ235340 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ235351 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ235352 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ235354 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ235356 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ235358 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ235359 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ235360 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ235362 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ235363 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ235364 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ235368 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ235371 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ235377 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ235379 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ408909 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ408910 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ408923 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ408927 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ408935 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ408936 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ408944 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ408951 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ408954 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ430599 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK021845 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK295635 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK303179 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AM050774 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AM050775 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AM050799 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AM050802 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AP000941 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AP001267 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY187942 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY187943 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY187944 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY187945 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY282403 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY288759 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY288765 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY373585 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY387662 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY839727 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY839728 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY839740 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC015388 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC039603 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC065385 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC090876 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471065 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068267 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D14540 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ224341 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EF139427 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FM165198 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HF548060 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF938533 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF938536 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  L01986 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  L04284 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  L04731 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  MH319859 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  MH746808 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  MH973314 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  MH973316 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  MH973318 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  MN238612 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  MT721856 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  MT786685 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  MT786686 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  MW298863 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  MZ443566 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  OM870966 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  S66432 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  S78570 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  S78571 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  S82034 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U04737 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X83604 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Y16604 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Y16605 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Y18926 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z69744 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z69745 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z69746 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z69747 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z69748 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z69749 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z69750 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z69751 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z69752 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z69753 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z69754 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z69755 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z69756 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z69757 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z69758 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z69759 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z69760 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z69761 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z69762 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z69763 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z69764 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z69765 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z69766 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z69767 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z69768 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z69769 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z69770 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z69771 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z69772 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z69773 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z69774 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z69775 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z69776 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z69777 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z69778 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z69779 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z69780 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENST00000389506   ⟹   ENSP00000374157
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl11118,436,490 - 118,523,917 (+)Ensembl
RefSeq Acc Id: ENST00000392873
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl11118,481,988 - 118,484,869 (+)Ensembl
RefSeq Acc Id: ENST00000420751
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl11118,484,183 - 118,488,760 (+)Ensembl
RefSeq Acc Id: ENST00000525408
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl11118,519,557 - 118,522,195 (+)Ensembl
RefSeq Acc Id: ENST00000527839
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl11118,509,548 - 118,525,576 (+)Ensembl
RefSeq Acc Id: ENST00000527869   ⟹   ENSP00000432652
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl11118,436,492 - 118,482,092 (+)Ensembl
RefSeq Acc Id: ENST00000528278
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl11118,495,191 - 118,505,185 (+)Ensembl
RefSeq Acc Id: ENST00000529852   ⟹   ENSP00000436564
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl11118,436,456 - 118,449,995 (+)Ensembl
RefSeq Acc Id: ENST00000531904   ⟹   ENSP00000432391
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl11118,436,510 - 118,484,314 (+)Ensembl
RefSeq Acc Id: ENST00000532204   ⟹   ENSP00000434618
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl11118,436,492 - 118,449,984 (+)Ensembl
RefSeq Acc Id: ENST00000533790   ⟹   ENSP00000436700
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl11118,436,492 - 118,482,248 (+)Ensembl
RefSeq Acc Id: ENST00000534085
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl11118,505,614 - 118,508,487 (+)Ensembl
RefSeq Acc Id: ENST00000534358   ⟹   ENSP00000436786
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl11118,436,492 - 118,526,832 (+)Ensembl
RefSeq Acc Id: ENST00000534678
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl11118,508,843 - 118,513,214 (+)Ensembl
RefSeq Acc Id: ENST00000647638
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl11118,437,192 - 118,439,173 (+)Ensembl
RefSeq Acc Id: ENST00000647944   ⟹   ENSP00000498134
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl11118,506,264 - 118,510,110 (+)Ensembl
RefSeq Acc Id: ENST00000648029
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl11118,436,932 - 118,469,103 (+)Ensembl
RefSeq Acc Id: ENST00000648565
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl11118,507,902 - 118,522,868 (+)Ensembl
RefSeq Acc Id: ENST00000648910
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl11118,467,551 - 118,471,777 (+)Ensembl
RefSeq Acc Id: ENST00000649410
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl11118,482,423 - 118,483,204 (+)Ensembl
RefSeq Acc Id: ENST00000649666   ⟹   ENSP00000497918
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl11118,436,464 - 118,449,995 (+)Ensembl
RefSeq Acc Id: ENST00000649690   ⟹   ENSP00000497372
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl11118,436,492 - 118,482,092 (+)Ensembl
RefSeq Acc Id: ENST00000649699   ⟹   ENSP00000496927
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl11118,436,513 - 118,522,172 (+)Ensembl
RefSeq Acc Id: ENST00000649878   ⟹   ENSP00000497891
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl11118,499,303 - 118,513,876 (+)Ensembl
RefSeq Acc Id: ENST00000685397   ⟹   ENSP00000509586
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl11118,499,303 - 118,519,792 (+)Ensembl
RefSeq Acc Id: ENST00000685498   ⟹   ENSP00000509293
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl11118,484,865 - 118,491,928 (+)Ensembl
RefSeq Acc Id: ENST00000685719   ⟹   ENSP00000509757
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl11118,474,179 - 118,484,975 (+)Ensembl
RefSeq Acc Id: ENST00000686370   ⟹   ENSP00000509179
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl11118,499,303 - 118,519,792 (+)Ensembl
RefSeq Acc Id: ENST00000686588   ⟹   ENSP00000510552
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl11118,509,948 - 118,526,832 (+)Ensembl
RefSeq Acc Id: ENST00000688355   ⟹   ENSP00000509621
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl11118,491,744 - 118,494,767 (+)Ensembl
RefSeq Acc Id: ENST00000689424   ⟹   ENSP00000509852
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl11118,497,936 - 118,506,646 (+)Ensembl
RefSeq Acc Id: ENST00000691002   ⟹   ENSP00000510212
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl11118,493,113 - 118,496,367 (+)Ensembl
RefSeq Acc Id: ENST00000691053   ⟹   ENSP00000509168
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl11118,436,505 - 118,523,881 (+)Ensembl
RefSeq Acc Id: ENST00000693536   ⟹   ENSP00000509415
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl11118,493,113 - 118,496,367 (+)Ensembl
RefSeq Acc Id: NM_001197104   ⟹   NP_001184033
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3811118,436,492 - 118,526,832 (+)NCBI
GRCh3711118,307,205 - 118,397,539 (+)ENTREZGENE
HuRef11114,244,065 - 114,334,229 (+)ENTREZGENE
CHM1_111118,193,852 - 118,284,190 (+)NCBI
T2T-CHM13v2.011118,455,794 - 118,546,121 (+)NCBI
Sequence:
RefSeq Acc Id: NM_005933   ⟹   NP_005924
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3811118,436,492 - 118,526,832 (+)NCBI
GRCh3711118,307,205 - 118,397,539 (+)ENTREZGENE
Build 3611117,812,415 - 117,901,146 (+)NCBI Archive
HuRef11114,244,065 - 114,334,229 (+)ENTREZGENE
CHM1_111118,193,852 - 118,284,190 (+)NCBI
T2T-CHM13v2.011118,455,794 - 118,546,121 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006718839   ⟹   XP_006718902
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3811118,436,492 - 118,526,832 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011542829   ⟹   XP_011541131
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3811118,436,492 - 118,526,832 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011542830   ⟹   XP_011541132
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3811118,436,492 - 118,526,832 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011542831   ⟹   XP_011541133
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3811118,436,492 - 118,526,832 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011542833   ⟹   XP_011541135
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3811118,436,492 - 118,526,832 (+)NCBI
Sequence:
RefSeq Acc Id: XM_047426963   ⟹   XP_047282919
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3811118,436,492 - 118,526,832 (+)NCBI
RefSeq Acc Id: XM_047426964   ⟹   XP_047282920
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3811118,436,492 - 118,526,832 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001184033 (Get FASTA)   NCBI Sequence Viewer  
  NP_005924 (Get FASTA)   NCBI Sequence Viewer  
  XP_006718902 (Get FASTA)   NCBI Sequence Viewer  
  XP_011541131 (Get FASTA)   NCBI Sequence Viewer  
  XP_011541132 (Get FASTA)   NCBI Sequence Viewer  
  XP_011541133 (Get FASTA)   NCBI Sequence Viewer  
  XP_011541135 (Get FASTA)   NCBI Sequence Viewer  
  XP_047282919 (Get FASTA)   NCBI Sequence Viewer  
  XP_047282920 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA18644 (Get FASTA)   NCBI Sequence Viewer  
  AAA58669 (Get FASTA)   NCBI Sequence Viewer  
  AAA92511 (Get FASTA)   NCBI Sequence Viewer  
  AAB28545 (Get FASTA)   NCBI Sequence Viewer  
  AAB34770 (Get FASTA)   NCBI Sequence Viewer  
  AAB34771 (Get FASTA)   NCBI Sequence Viewer  
  AAC25956 (Get FASTA)   NCBI Sequence Viewer  
  AAC25957 (Get FASTA)   NCBI Sequence Viewer  
  AAC51814 (Get FASTA)   NCBI Sequence Viewer  
  AAC95283 (Get FASTA)   NCBI Sequence Viewer  
  AAC95284 (Get FASTA)   NCBI Sequence Viewer  
  AAG26334 (Get FASTA)   NCBI Sequence Viewer  
  AAG26335 (Get FASTA)   NCBI Sequence Viewer  
  AAG31978 (Get FASTA)   NCBI Sequence Viewer  
  AAG31979 (Get FASTA)   NCBI Sequence Viewer  
  AAG31982 (Get FASTA)   NCBI Sequence Viewer  
  AAG31983 (Get FASTA)   NCBI Sequence Viewer  
  AAG31984 (Get FASTA)   NCBI Sequence Viewer  
  AAG31985 (Get FASTA)   NCBI Sequence Viewer  
  AAG31986 (Get FASTA)   NCBI Sequence Viewer  
  AAM14566 (Get FASTA)   NCBI Sequence Viewer  
  AAO38742 (Get FASTA)   NCBI Sequence Viewer  
  AAO38743 (Get FASTA)   NCBI Sequence Viewer  
  AAO38744 (Get FASTA)   NCBI Sequence Viewer  
  AAO38745 (Get FASTA)   NCBI Sequence Viewer  
  AAQ63624 (Get FASTA)   NCBI Sequence Viewer  
  AAQ91347 (Get FASTA)   NCBI Sequence Viewer  
  ABB29493 (Get FASTA)   NCBI Sequence Viewer  
  AXN89842 (Get FASTA)   NCBI Sequence Viewer  
  BAA03407 (Get FASTA)   NCBI Sequence Viewer  
  BAD92745 (Get FASTA)   NCBI Sequence Viewer  
  BAG58509 (Get FASTA)   NCBI Sequence Viewer  
  BAG64274 (Get FASTA)   NCBI Sequence Viewer  
  CAA58584 (Get FASTA)   NCBI Sequence Viewer  
  CAA93625 (Get FASTA)   NCBI Sequence Viewer  
  CAB56460 (Get FASTA)   NCBI Sequence Viewer  
  CAQ60122 (Get FASTA)   NCBI Sequence Viewer  
  CCO13771 (Get FASTA)   NCBI Sequence Viewer  
  EAW67380 (Get FASTA)   NCBI Sequence Viewer  
  EAW67381 (Get FASTA)   NCBI Sequence Viewer  
  EAW67382 (Get FASTA)   NCBI Sequence Viewer  
  EAW67383 (Get FASTA)   NCBI Sequence Viewer  
  EAW67384 (Get FASTA)   NCBI Sequence Viewer  
  Q03164 (Get FASTA)   NCBI Sequence Viewer  
  QCI03652 (Get FASTA)   NCBI Sequence Viewer  
  QCI03654 (Get FASTA)   NCBI Sequence Viewer  
  QCI03656 (Get FASTA)   NCBI Sequence Viewer  
  QIH53925 (Get FASTA)   NCBI Sequence Viewer  
  QXU65851 (Get FASTA)   NCBI Sequence Viewer  
  QYV21716 (Get FASTA)   NCBI Sequence Viewer  
  UAA40933 (Get FASTA)   NCBI Sequence Viewer  
  UOF76662 (Get FASTA)   NCBI Sequence Viewer  
  UTQ10389 (Get FASTA)   NCBI Sequence Viewer  
  UTQ10390 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001184033   ⟸   NM_001197104
- Peptide Label: isoform 1
- UniProtKB: Q03164 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_005924   ⟸   NM_005933
- Peptide Label: isoform 2 precursor
- UniProtKB: Q9UMA3 (UniProtKB/Swiss-Prot),   Q03164 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006718902   ⟸   XM_006718839
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_011541131   ⟸   XM_011542829
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_011541133   ⟸   XM_011542831
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_011541132   ⟸   XM_011542830
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_011541135   ⟸   XM_011542833
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: ENSP00000497891   ⟸   ENST00000649878
RefSeq Acc Id: ENSP00000496927   ⟸   ENST00000649699
RefSeq Acc Id: ENSP00000497372   ⟸   ENST00000649690
RefSeq Acc Id: ENSP00000497918   ⟸   ENST00000649666
RefSeq Acc Id: ENSP00000432391   ⟸   ENST00000531904
RefSeq Acc Id: ENSP00000434618   ⟸   ENST00000532204
RefSeq Acc Id: ENSP00000374157   ⟸   ENST00000389506
RefSeq Acc Id: ENSP00000436700   ⟸   ENST00000533790
RefSeq Acc Id: ENSP00000436786   ⟸   ENST00000534358
RefSeq Acc Id: ENSP00000432652   ⟸   ENST00000527869
RefSeq Acc Id: ENSP00000436564   ⟸   ENST00000529852
RefSeq Acc Id: ENSP00000498134   ⟸   ENST00000647944
RefSeq Acc Id: ENSP00000510212   ⟸   ENST00000691002
RefSeq Acc Id: ENSP00000509852   ⟸   ENST00000689424
RefSeq Acc Id: ENSP00000509293   ⟸   ENST00000685498
RefSeq Acc Id: ENSP00000509179   ⟸   ENST00000686370
RefSeq Acc Id: ENSP00000510552   ⟸   ENST00000686588
RefSeq Acc Id: ENSP00000509415   ⟸   ENST00000693536
RefSeq Acc Id: ENSP00000509586   ⟸   ENST00000685397
RefSeq Acc Id: ENSP00000509757   ⟸   ENST00000685719
RefSeq Acc Id: ENSP00000509621   ⟸   ENST00000688355
RefSeq Acc Id: ENSP00000509168   ⟸   ENST00000691053
RefSeq Acc Id: XP_047282919   ⟸   XM_047426963
- Peptide Label: isoform X4
RefSeq Acc Id: XP_047282920   ⟸   XM_047426964
- Peptide Label: isoform X7
Protein Domains
Bromo   CXXC-type   FYR C-terminal   FYR N-terminal   PHD-type   Post-SET   SET

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q03164-F1-model_v2 AlphaFold Q03164 1-1400 view protein structure
AF-Q03164-F2-model_v2 AlphaFold Q03164 201-1600