FASN (fatty acid synthase) - Rat Genome Database
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Gene: FASN (fatty acid synthase) Homo sapiens
Analyze
Symbol: FASN
Name: fatty acid synthase
RGD ID: 1347691
HGNC Page HGNC
Description: Exhibits RNA binding activity and cadherin binding activity. Involved in osteoblast differentiation. Localizes to Golgi apparatus; cytosol; and plasma membrane.
Type: protein-coding
RefSeq Status: REVIEWED
Also known as: FAS; MGC14367; MGC15706; OA-519; SDR27X1; short chain dehydrogenase/reductase family 27X, member 1; type I fatty acid synthase
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
NCBI Annotation Information: Note: FAS (Gene ID: 355) and FASN (Gene ID: 2194) share the FAS symbol/alias in common. FAS is a widely used alternative name for fatty acid synthase (FASN), which can be confused with the official symbol for FAS (Fas cell surface death receptor, GeneID 355). [01 Jun 2018]
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1782,078,338 - 82,098,294 (-)EnsemblGRCh38hg38GRCh38
GRCh381782,078,338 - 82,098,303 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371780,036,214 - 80,056,112 (-)NCBIGRCh37GRCh37hg19GRCh37
GRCh371780,036,214 - 80,056,106 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361777,629,503 - 77,649,395 (-)NCBINCBI36hg18NCBI36
Build 341777,629,503 - 77,649,395NCBI
Celera1776,630,560 - 76,648,850 (-)NCBI
Cytogenetic Map17q25.3NCBI
HuRef1775,436,168 - 75,456,057 (-)NCBIHuRef
CHM1_11780,122,440 - 80,142,272 (-)NCBICHM1_1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-catechin  (ISO)
(-)-epigallocatechin 3-gallate  (EXP,ISO)
(R)-mevalonic acid  (ISO)
(RS)-coclaurine  (ISO)
(RS)-norcoclaurine  (ISO)
(S)-coclaurine  (ISO)
(S)-nicotine  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
1,3-dichloropropan-2-ol  (EXP,ISO)
1-(3-(trifluoromethyl)phenyl)piperazine  (ISO)
1-\{2-[(4-chlorobenzyl)sulfanyl]-2-(2,4-dichlorophenyl)ethyl\}-1H-imidazole  (EXP)
1-benzylpiperazine  (ISO)
1-naphthyl isothiocyanate  (EXP,ISO)
14-Deoxy-11,12-didehydroandrographolide  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP,ISO)
17beta-hydroxy-17-methylestra-4,9,11-trien-3-one  (EXP)
17beta-hydroxy-5alpha-androstan-3-one  (EXP,ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,4,7,8-Pentachlorodibenzofuran  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
2,4-dinitrotoluene  (ISO)
2,5-hexanedione  (ISO)
2,6-dinitrotoluene  (ISO)
2-amino-2-deoxy-D-glucopyranose  (EXP)
2-hydroxypropanoic acid  (EXP)
3,3',4,4',5-pentachlorobiphenyl  (ISO)
3,3',4,4'-tetrachlorobiphenyl  (ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3,3',5-triiodo-L-thyronine  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (EXP,ISO)
3H-1,2-dithiole-3-thione  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-(N-nitrosomethylamino)-1-(3-pyridyl)butan-1-one  (ISO)
4-nonylphenol  (ISO)
4-phenylbutyric acid  (ISO)
4-tert-Octylphenol  (ISO)
5-(2-chloroethyl)-4-methylthiazole  (ISO)
6-(4-chlorophenyl)imidazo[2,1-b][1,3]thiazole-5-carbaldehyde O-(3,4-dichlorobenzyl)oxime  (EXP)
7,12-dimethyltetraphene  (ISO)
8'-apo-beta,psi-caroten-8'-al  (EXP)
9-cis-retinoic acid  (EXP)
acarbose  (ISO)
acetamide  (ISO)
acrolein  (EXP)
acrylamide  (ISO)
aflatoxin B1  (ISO)
alcohol  (ISO)
aldehydo-D-glucosamine  (EXP)
aldehydo-D-glucose  (EXP,ISO)
all-trans-4-oxoretinoic acid  (EXP)
all-trans-retinoic acid  (EXP)
alliin  (EXP)
allopurinol  (EXP,ISO)
alpha-linolenic acid  (ISO)
alpha-pinene  (EXP)
amiodarone  (EXP,ISO)
andrographolide  (ISO)
apigenin  (ISO)
arachidonic acid  (ISO)
Aroclor 1254  (ISO)
arsane  (EXP)
arsenic atom  (EXP)
arsenous acid  (EXP,ISO)
atorvastatin calcium  (EXP,ISO)
ATP  (EXP)
atrazine  (EXP,ISO)
avobenzone  (EXP)
azoxystrobin  (ISO)
baicalein  (ISO)
bathocuproine disulfonic acid  (EXP)
benzene  (EXP,ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[b]fluoranthene  (EXP)
Benzyl parahydroxybenzoate  (EXP,ISO)
benzylpenicillin  (ISO)
beta-D-glucosamine  (EXP)
beta-hexachlorocyclohexane  (EXP,ISO)
beta-naphthoflavone  (EXP)
betulin  (EXP)
bexarotene  (EXP,ISO)
bezafibrate  (EXP,ISO)
bifenthrin  (EXP,ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
boric acid  (ISO)
bromobenzene  (ISO)
buspirone  (ISO)
buta-1,3-diene  (ISO)
Butylbenzyl phthalate  (ISO)
Butylparaben  (EXP,ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
calcitriol  (EXP)
carbon nanotube  (EXP,ISO)
carvedilol  (ISO)
celecoxib  (ISO)
cerulenin  (EXP,ISO)
chenodeoxycholic acid  (ISO)
chitosan  (ISO)
chloroethene  (ISO)
chlorogenic acid  (ISO)
chlorohydrocarbon  (EXP)
chloropicrin  (EXP)
chlorpyrifos  (ISO)
choline  (ISO)
ciguatoxin CTX1B  (ISO)
cis-caffeic acid  (EXP,ISO)
cisplatin  (EXP,ISO)
clobetasol  (ISO)
clofibrate  (ISO)
clozapine  (EXP)
cobalt dichloride  (EXP,ISO)
colforsin daropate hydrochloride  (EXP)
copper atom  (EXP,ISO)
copper(0)  (EXP,ISO)
copper(II) sulfate  (EXP)
corticosterone  (ISO)
cortisol  (EXP)
coumarin  (ISO)
crizotinib  (EXP)
curcumin  (ISO)
cyanocob(III)alamin  (ISO)
cycloheximide  (EXP)
cyclosporin A  (EXP,ISO)
cyhalothrin  (ISO)
cyproconazole  (EXP,ISO)
D-glucose  (EXP,ISO)
DDE  (EXP,ISO)
DDT  (ISO)
decabromodiphenyl ether  (ISO)
deoxypodophyllotoxin  (EXP)
dexamethasone  (EXP,ISO)
Diallyl sulfide  (ISO)
diallyl trisulfide  (ISO)
diarsenic trioxide  (EXP,ISO)
diazinon  (EXP)
dibenz[a,h]anthracene  (EXP)
dibenzo[a,l]pyrene  (EXP)
dibutyl phthalate  (ISO)
dichloroacetic acid  (ISO)
diclofenac  (ISO)
dicrotophos  (EXP)
diethyl maleate  (ISO)
dihydroartemisinin  (EXP)
dioxygen  (EXP,ISO)
dorsomorphin  (EXP,ISO)
doxorubicin  (EXP)
duvoglustat  (ISO)
elemental selenium  (EXP,ISO)
endosulfan  (ISO)
enzyme inhibitor  (EXP)
epoxiconazole  (ISO)
erythromycin A  (ISO)
erythromycin estolate  (ISO)
esculetin  (ISO)
ethanol  (EXP,ISO)
ethyl methanesulfonate  (EXP)
etoposide  (EXP)
eugenol  (ISO)
farnesol  (EXP)
fenofibrate  (EXP,ISO)
ferulic acid  (ISO)
fipronil  (ISO)
folic acid  (ISO)
folpet  (ISO)
formaldehyde  (EXP)
fructose  (ISO)
fulvestrant  (EXP)
furan  (ISO)
gadolinium trichloride  (ISO)
gamma-hexachlorocyclohexane  (ISO)
Gastrodin  (ISO)
genistein  (EXP,ISO)
geraniol  (ISO)
gingerol  (ISO)
glafenine  (ISO)
glucagon  (ISO)
glucose  (EXP,ISO)
glutathione  (ISO)
glycine betaine  (ISO)
glyphosate  (ISO)
guggulsterone  (ISO)
GW 3965  (EXP,ISO)
GW 4064  (EXP)
GW 7647  (EXP)
haloperidol  (EXP)
herbacetin  (ISO)
hesperidin  (ISO)
hexadecanoic acid  (EXP,ISO)
hydrazines  (ISO)
ibuprofen  (EXP)
indinavir  (ISO)
isoflavones  (ISO)
isotretinoin  (EXP)
ivermectin  (ISO)
kahweol  (EXP)
L-methionine  (ISO)
lamivudine  (ISO)
lead diacetate  (ISO)
lead(0)  (EXP)
lead(2+)  (EXP)
leflunomide  (EXP)
linoleic acid  (ISO)
linsidomine  (ISO)
lipopolysaccharide  (ISO)
lithocholic acid  (ISO)
losartan  (ISO)
lovastatin  (EXP)
luteolin  (ISO)
LY294002  (EXP)
manganese(II) chloride  (ISO)
melatonin  (ISO)
metformin  (EXP,ISO)
methapyrilene  (ISO)
methimazole  (EXP,ISO)
methotrexate  (ISO)
methyl methanesulfonate  (EXP)
methylmercury chloride  (ISO)
miconazole  (ISO)
microcystin-LR  (ISO)
mifepristone  (EXP)
Mitotane  (EXP)
mitoxantrone  (EXP)
mono(2-ethylhexyl) phthalate  (EXP,ISO)
monocrotophos  (ISO)
monosodium L-glutamate  (ISO)
motexafin gadolinium  (EXP)
myriocin  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
N-methyl-N'-nitro-N-nitrosoguanidine  (EXP)
N-methyl-N-nitrosourea  (ISO)
N-nitrosodiethylamine  (ISO)
N-nitrosomorpholine  (ISO)
NADP zwitterion  (EXP)
NADP(+)  (EXP)
naloxone  (ISO)
naringin  (ISO)
nefazodone  (ISO)
nelfinavir  (EXP)
nickel atom  (EXP,ISO)
nickel dichloride  (EXP,ISO)
nickel sulfate  (EXP,ISO)
nicotine  (ISO)
nicotinic acid  (EXP)
nimesulide  (ISO)
nitrofen  (ISO)
norethisterone  (EXP)
Norethynodrel  (EXP)
O-methyleugenol  (EXP)
obeticholic acid  (EXP,ISO)
olanzapine  (ISO)
olaparib  (ISO)
oleic acid  (EXP,ISO)
oleuropein  (ISO)
Olmesartan medoxomil  (ISO)
orlistat  (EXP,ISO)
oroxylin A  (EXP,ISO)
ozone  (EXP,ISO)
p-tert-Amylphenol  (ISO)
paclitaxel  (EXP)
paracetamol  (EXP,ISO)
Paxilline  (EXP)
PD 0325901  (EXP)
penconazole  (ISO)
perfluorobutanesulfonic acid  (ISO)
perfluorobutyric acid  (ISO)
perfluorododecanoic acid  (ISO)
perfluorohexanesulfonic acid  (ISO)
perfluorononanoic acid  (EXP)
perfluorooctane-1-sulfonic acid  (EXP,ISO)
perfluorooctanoic acid  (ISO)
permethrin  (ISO)
phenformin  (ISO)
phenobarbital  (ISO)
phosphatidylcholine  (EXP)
phosphocholine  (EXP)
phosphorylcholine chloride  (EXP)
pimecrolimus  (EXP)
pirinixic acid  (ISO)
platycodin D  (ISO)
potassium dichromate  (EXP)
pregnenolone 16alpha-carbonitrile  (ISO)
propamocarb  (ISO)
propiconazole  (EXP)
Propiverine  (ISO)
propylparaben  (ISO)
prostaglandin E2  (ISO)
protein kinase inhibitor  (EXP,ISO)
pterostilbene  (ISO)
puerarin  (ISO)
PX-866  (ISO)
pyrroloquinoline quinone  (ISO)
quercetin  (EXP,ISO)
rac-lactic acid  (EXP)
raffinose  (EXP,ISO)
resveratrol  (EXP,ISO)
rifampicin  (EXP,ISO)
rimonabant  (ISO)
ritonavir  (ISO)
rotenone  (ISO)
S-allylcysteine  (EXP)
SB 431542  (EXP)
scopoletin  (ISO)
selenium atom  (EXP,ISO)
sildenafil citrate  (ISO)
silibinin  (EXP,ISO)
silicon dioxide  (EXP,ISO)
simvastatin  (EXP,ISO)
sodium arsenite  (ISO)
sodium dichromate  (ISO)
sodium fluoride  (ISO)
stavudine  (ISO)
steviol  (ISO)
streptozocin  (ISO)
sucrose  (ISO)
sulconazole  (EXP)
sulforaphane  (ISO)
sunitinib  (EXP)
tamoxifen  (ISO)
taurine  (ISO)
tebuconazole  (EXP)
teriflunomide  (EXP)
tetrachloromethane  (ISO)
tetracycline  (ISO)
thiazolidinediones  (ISO)
thimerosal  (EXP)
thioacetamide  (ISO)
titanium dioxide  (EXP,ISO)
trametinib  (EXP)
trans-caffeic acid  (EXP,ISO)
tributylstannane  (EXP,ISO)
trichloroethene  (ISO)
triclocarban  (ISO)
triclosan  (EXP,ISO)
triolein  (ISO)
triphenyl phosphate  (EXP,ISO)
troglitazone  (EXP,ISO)
trovafloxacin  (ISO)
tungsten  (ISO)
tunicamycin  (EXP,ISO)
urethane  (ISO)
ursodeoxycholic acid  (EXP,ISO)
valdecoxib  (ISO)
valproic acid  (EXP,ISO)
vemurafenib  (EXP)
vorinostat  (EXP)
yohimbine  (ISO)
zidovudine  (EXP,ISO)
zinc acetate  (EXP)
zinc atom  (ISO)
zinc dichloride  (EXP)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:600212   PMID:1044453   PMID:2669958   PMID:7567999   PMID:7595075   PMID:7835891   PMID:8022791   PMID:8662758   PMID:8944226   PMID:8986532   PMID:9356448   PMID:10769045  
PMID:11018265   PMID:11034606   PMID:11248039   PMID:11756679   PMID:11790787   PMID:12060737   PMID:12213084   PMID:12477932   PMID:12515624   PMID:12531699   PMID:12646257   PMID:12689621  
PMID:12815048   PMID:12839976   PMID:12882974   PMID:12939396   PMID:14689581   PMID:14744259   PMID:15047835   PMID:15050917   PMID:15113941   PMID:15161933   PMID:15220220   PMID:15235125  
PMID:15254710   PMID:15302935   PMID:15489334   PMID:15507492   PMID:15523670   PMID:15556626   PMID:15669079   PMID:15897909   PMID:16009940   PMID:16175090   PMID:16189514   PMID:16210410  
PMID:16215233   PMID:16263121   PMID:16582625   PMID:16644689   PMID:16788566   PMID:16806233   PMID:16894240   PMID:16964243   PMID:17081065   PMID:17081983   PMID:17188392   PMID:17220478  
PMID:17488603   PMID:17492427   PMID:17618104   PMID:17618296   PMID:17620599   PMID:17631500   PMID:17662476   PMID:17687193   PMID:17847090   PMID:18022563   PMID:18029348   PMID:18211286  
PMID:18239060   PMID:18281474   PMID:18281512   PMID:18410580   PMID:18420801   PMID:18455495   PMID:18528705   PMID:18635971   PMID:18660489   PMID:18682402   PMID:18682509   PMID:18796435  
PMID:18802406   PMID:18820672   PMID:18830996   PMID:18838960   PMID:18949744   PMID:18955444   PMID:19027726   PMID:19032940   PMID:19056867   PMID:19083124   PMID:19135240   PMID:19252981  
PMID:19300427   PMID:19318631   PMID:19358283   PMID:19380743   PMID:19467222   PMID:19471962   PMID:19517019   PMID:19542561   PMID:19543203   PMID:19621387   PMID:19728851   PMID:19738201  
PMID:19847302   PMID:19851294   PMID:19876008   PMID:19885560   PMID:19893031   PMID:19913121   PMID:19946888   PMID:20067991   PMID:20126469   PMID:20132826   PMID:20228782   PMID:20299470  
PMID:20356977   PMID:20360068   PMID:20458337   PMID:20467437   PMID:20511185   PMID:20546348   PMID:20602615   PMID:20606731   PMID:20628086   PMID:20657182   PMID:20679621   PMID:20691246  
PMID:20691427   PMID:20811782   PMID:20877624   PMID:20965718   PMID:21044743   PMID:21081503   PMID:21081666   PMID:21145461   PMID:21319273   PMID:21325951   PMID:21360678   PMID:21442130  
PMID:21641044   PMID:21646813   PMID:21654808   PMID:21726077   PMID:21726808   PMID:21757596   PMID:21877200   PMID:21908709   PMID:21922386   PMID:21970855   PMID:21988832   PMID:22127986  
PMID:22135723   PMID:22145905   PMID:22199357   PMID:22266115   PMID:22268729   PMID:22370483   PMID:22412018   PMID:22425483   PMID:22490687   PMID:22586326   PMID:22653145   PMID:22658674  
PMID:22681889   PMID:22723001   PMID:22771636   PMID:22786746   PMID:22863883   PMID:22939629   PMID:22949843   PMID:22990118   PMID:23040493   PMID:23064941   PMID:23084401   PMID:23125841  
PMID:23135268   PMID:23142364   PMID:23184344   PMID:23184937   PMID:23208675   PMID:23269672   PMID:23306391   PMID:23317220   PMID:23402259   PMID:23419663   PMID:23427160   PMID:23438482  
PMID:23455922   PMID:23533145   PMID:23675653   PMID:23725225   PMID:23887214   PMID:23982110   PMID:24080588   PMID:24105476   PMID:24108439   PMID:24200503   PMID:24277691   PMID:24337182  
PMID:24362464   PMID:24366211   PMID:24366813   PMID:24457600   PMID:24510238   PMID:24520215   PMID:24596388   PMID:24639526   PMID:24696471   PMID:24711643   PMID:24771867   PMID:24789255  
PMID:24907642   PMID:25147182   PMID:25151963   PMID:25173531   PMID:25192599   PMID:25227797   PMID:25231933   PMID:25301948   PMID:25315684   PMID:25433947   PMID:25437307   PMID:25468996  
PMID:25609649   PMID:25631074   PMID:25640309   PMID:25674245   PMID:25756610   PMID:25852190   PMID:25855506   PMID:25868764   PMID:25871544   PMID:25921289   PMID:25947066   PMID:25958981  
PMID:25959826   PMID:25963833   PMID:25970773   PMID:26025399   PMID:26107737   PMID:26109148   PMID:26134042   PMID:26186194   PMID:26217791   PMID:26344197   PMID:26378037   PMID:26425687  
PMID:26446488   PMID:26496610   PMID:26514456   PMID:26561776   PMID:26618866   PMID:26643866   PMID:26663084   PMID:26693507   PMID:26816005   PMID:26831064   PMID:26851298   PMID:26891033  
PMID:26934656   PMID:26936618   PMID:26951539   PMID:26972000   PMID:26979993   PMID:27025967   PMID:27090298   PMID:27182664   PMID:27277534   PMID:27320910   PMID:27342126   PMID:27357679  
PMID:27375065   PMID:27375898   PMID:27461404   PMID:27478939   PMID:27503909   PMID:27579768   PMID:27591049   PMID:27601165   PMID:27609421   PMID:27684187   PMID:27713175   PMID:27714708  
PMID:27716508   PMID:27840951   PMID:27918556   PMID:27939887   PMID:28027390   PMID:28027934   PMID:28159572   PMID:28197637   PMID:28232487   PMID:28339092   PMID:28400509   PMID:28418352  
PMID:28429738   PMID:28442505   PMID:28514442   PMID:28515276   PMID:28581483   PMID:28639885   PMID:28675297   PMID:28685749   PMID:28729415   PMID:28775317   PMID:28902428   PMID:28962653  
PMID:29128334   PMID:29130104   PMID:29180619   PMID:29229926   PMID:29285303   PMID:29306075   PMID:29331414   PMID:29331416   PMID:29449326   PMID:29453645   PMID:29467282   PMID:29483509  
PMID:29507755   PMID:29509190   PMID:29563501   PMID:29564676   PMID:29681001   PMID:29845934   PMID:29859926   PMID:29911972   PMID:29955894   PMID:29991511   PMID:30146486   PMID:30221356  
PMID:30256698   PMID:30258100   PMID:30272292   PMID:30425250   PMID:30455355   PMID:30463901   PMID:30559450   PMID:30575818   PMID:30619288   PMID:30684846   PMID:30692057   PMID:30711629  
PMID:30824767   PMID:30833792   PMID:30890647   PMID:30914315   PMID:30931932   PMID:30948266   PMID:30955223   PMID:30962418   PMID:31010829   PMID:31043565   PMID:31048545   PMID:31067453  
PMID:31073040   PMID:31091453   PMID:31095793   PMID:31122252   PMID:31239290   PMID:31300519   PMID:31323309   PMID:31343991   PMID:31405213   PMID:31405565   PMID:31436131   PMID:31452512  
PMID:31501420   PMID:31519766   PMID:31536960   PMID:31586073   PMID:31594092   PMID:31620119   PMID:31677030   PMID:31732153   PMID:31762063   PMID:31894270   PMID:31927122   PMID:31974474  
PMID:31980649   PMID:32139877   PMID:32176628   PMID:32178271   PMID:32296183   PMID:32416067   PMID:32525817   PMID:32529326   PMID:32694731   PMID:32703430   PMID:32786267   PMID:32814053  
PMID:32838362   PMID:33005030  


Genomics

Comparative Map Data
FASN
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1782,078,338 - 82,098,294 (-)EnsemblGRCh38hg38GRCh38
GRCh381782,078,338 - 82,098,303 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371780,036,214 - 80,056,112 (-)NCBIGRCh37GRCh37hg19GRCh37
GRCh371780,036,214 - 80,056,106 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361777,629,503 - 77,649,395 (-)NCBINCBI36hg18NCBI36
Build 341777,629,503 - 77,649,395NCBI
Celera1776,630,560 - 76,648,850 (-)NCBI
Cytogenetic Map17q25.3NCBI
HuRef1775,436,168 - 75,456,057 (-)NCBIHuRef
CHM1_11780,122,440 - 80,142,272 (-)NCBICHM1_1
Fasn
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911120,696,784 - 120,715,992 (-)NCBIGRCm39mm39
GRCm3811120,805,958 - 120,825,166 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11120,805,846 - 120,824,547 (-)EnsemblGRCm38mm10GRCm38
MGSCv3711120,667,272 - 120,685,861 (-)NCBIGRCm37mm9NCBIm37
MGSCv3611120,623,167 - 120,640,332 (-)NCBImm8
Celera11132,542,449 - 132,561,038 (-)NCBICelera
Cytogenetic Map11E2NCBI
cM Map1184.56NCBI
Fasn
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.210106,072,093 - 106,090,259 (-)NCBI
Rnor_6.0 Ensembl10109,987,735 - 110,005,901 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.010109,987,735 - 110,005,901 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.010109,579,051 - 109,597,217 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera10104,615,873 - 104,634,039 (-)NCBICelera
Cytogenetic Map10q32.3NCBI
Fasn
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555061,063,002 - 1,079,939 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555061,063,002 - 1,079,939 (+)NCBIChiLan1.0ChiLan1.0
FASN
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11782,187,516 - 82,205,647 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1782,187,516 - 82,205,647 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01776,483,108 - 76,503,148 (-)NCBIMhudiblu_PPA_v0panPan3
FASN
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl9232,963 - 249,092 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.19233,105 - 249,573 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Fasn
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365945,591,785 - 5,609,886 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FASN
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl12920,507 - 937,559 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.112922,405 - 937,560 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2121,023,512 - 1,032,662 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FASN
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11673,988,410 - 74,008,374 (-)NCBI
ChlSab1.1 Ensembl1673,982,899 - 74,006,551 (-)Ensembl
Fasn
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462480110,910,022 - 10,926,505 (-)NCBI

Position Markers
D17S1256  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371780,053,206 - 80,053,312UniSTSGRCh37
Build 361777,646,495 - 77,646,601RGDNCBI36
Celera1776,647,709 - 76,647,815RGD
Cytogenetic Map17q25UniSTS
HuRef1775,453,157 - 75,453,263UniSTS
D17S1571  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371780,055,824 - 80,056,118UniSTSGRCh37
Build 361777,649,113 - 77,649,407RGDNCBI36
Cytogenetic Map17q25UniSTS
HuRef1775,455,775 - 75,456,069UniSTS
FASN_7242  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371780,036,314 - 80,037,084UniSTSGRCh37
Build 361777,629,603 - 77,630,373RGDNCBI36
Celera1776,630,660 - 76,631,431RGD
HuRef1775,436,268 - 75,437,038UniSTS

miRNA Target Status

Confirmed Target Of
miRNA GeneMature miRNAMethod NameResult TypeData TypeSupport TypePMID
MIR195hsa-miR-195-5pOncomiRDBexternal_infoNANA23162665
MIR942hsa-miR-942-5pMirtarbaseexternal_infoCLASHFunctional MTI (Weak)23622248

Predicted Target Of
Summary Value
Count of predictions:1805
Count of miRNA genes:773
Interacting mature miRNAs:908
Transcripts:ENST00000306749, ENST00000578424, ENST00000579410, ENST00000579758, ENST00000580382, ENST00000584610
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High 6 7 4 4 3 4 144 1 2 6 2 247 2
Medium 2392 1734 1704 614 1205 456 3830 1421 3537 264 1449 1602 174 1 957 2404 5 2
Low 41 1243 18 6 734 5 383 774 195 152 5 9 1 382 1
Below cutoff 7 8 1 3

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_004104 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011523538 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB209988 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC135056 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF250144 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY451392 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC007267 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC007305 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC007909 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC014631 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC014634 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC021544 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC063242 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471099 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JC739423 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  S80437 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U26644 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U29344 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U52428 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENST00000306749   ⟹   ENSP00000304592
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1782,078,338 - 82,098,236 (-)Ensembl
RefSeq Acc Id: ENST00000578424
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1782,079,007 - 82,080,695 (-)Ensembl
RefSeq Acc Id: ENST00000579410
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1782,085,158 - 82,085,660 (-)Ensembl
RefSeq Acc Id: ENST00000580382   ⟹   ENSP00000462949
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1782,079,168 - 82,080,742 (-)Ensembl
RefSeq Acc Id: ENST00000584610
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1782,078,997 - 82,079,929 (-)Ensembl
RefSeq Acc Id: ENST00000634990   ⟹   ENSP00000488964
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1782,078,340 - 82,098,187 (-)Ensembl
RefSeq Acc Id: ENST00000635197   ⟹   ENSP00000489514
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1782,093,601 - 82,098,294 (-)Ensembl
RefSeq Acc Id: ENST00000635733
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1782,096,403 - 82,096,841 (-)Ensembl
RefSeq Acc Id: ENST00000636628   ⟹   ENSP00000490921
RefSeq Status: