CAPZB (capping actin protein of muscle Z-line subunit beta) - Rat Genome Database

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Gene: CAPZB (capping actin protein of muscle Z-line subunit beta) Homo sapiens
Analyze
Symbol: CAPZB
Name: capping actin protein of muscle Z-line subunit beta
RGD ID: 1347618
HGNC Page HGNC
Description: Enables actin binding activity. Involved in cytoskeleton organization and regulation of cell morphogenesis. Located in extracellular exosome. Part of WASH complex.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: Cap Z; CAPB; CAPPB; capping actin protein of muscle Z-line beta subunit; capping protein (actin filament) muscle Z-line, beta; CAPZ; capZ beta; DKFZp686K0524; F-actin capping protein beta subunit; F-actin-capping protein subunit beta; FLJ12274; FLJ44693; MGC104401; MGC129749; MGC129750
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: CAPZBP1  
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38119,338,775 - 19,485,539 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl119,338,775 - 19,485,539 (-)EnsemblGRCh38hg38GRCh38
GRCh37119,665,269 - 19,812,033 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36119,537,860 - 19,684,579 (-)NCBINCBI36hg18NCBI36
Build 34119,411,069 - 19,491,551NCBI
Celera117,992,290 - 18,138,980 (-)NCBI
Cytogenetic Map1p36.13NCBI
HuRef117,911,593 - 18,058,372 (-)NCBIHuRef
CHM1_1119,774,569 - 19,921,335 (-)NCBICHM1_1
T2T-CHM13v2.0119,162,310 - 19,308,992 (-)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Differential protein levels and post-translational modifications in spinal cord injury of the rat. Afjehi-Sadat L, etal., J Proteome Res. 2010 Mar 5;9(3):1591-7. doi: 10.1021/pr901049a.
2. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
3. Activity-dependent localization in spines of the F-actin capping protein CapZ screened in a rat model of dementia. Kitanishi T, etal., Genes Cells. 2010 Jun;15(7):737-47. doi: 10.1111/j.1365-2443.2010.01411.x. Epub 2010 Jun 10.
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:7665558   PMID:9331217   PMID:9354614   PMID:9417921   PMID:12477932   PMID:12488317   PMID:12665801   PMID:14702039   PMID:14744259   PMID:15146197   PMID:15489334   PMID:16054028  
PMID:16130169   PMID:16169070   PMID:16300736   PMID:16678097   PMID:16710414   PMID:17353931   PMID:17643375   PMID:18457437   PMID:19056867   PMID:19156129   PMID:19199708   PMID:19299420  
PMID:19615732   PMID:19738201   PMID:19922875   PMID:20379614   PMID:20458337   PMID:20697350   PMID:20876399   PMID:20884878   PMID:21182205   PMID:21280222   PMID:21319273   PMID:21565293  
PMID:21822214   PMID:21834987   PMID:21844192   PMID:21873635   PMID:21900206   PMID:22070227   PMID:22234250   PMID:22266860   PMID:22268729   PMID:22482804   PMID:22494929   PMID:22623428  
PMID:22706086   PMID:22863883   PMID:22939629   PMID:22990118   PMID:23084401   PMID:23178720   PMID:23376485   PMID:23398456   PMID:23408906   PMID:23533145   PMID:24163370   PMID:24169447  
PMID:24457600   PMID:24625528   PMID:24711643   PMID:24852370   PMID:25144556   PMID:25147182   PMID:25468996   PMID:25496916   PMID:25852190   PMID:25921289   PMID:25963833   PMID:26186194  
PMID:26209609   PMID:26217791   PMID:26344197   PMID:26485645   PMID:26496610   PMID:26603838   PMID:26618866   PMID:26638075   PMID:26641092   PMID:26758871   PMID:26965049   PMID:26972000  
PMID:27173435   PMID:27248496   PMID:27377895   PMID:27432908   PMID:27462432   PMID:27684187   PMID:28104696   PMID:28302793   PMID:28325877   PMID:28378594   PMID:28493397   PMID:28514442  
PMID:28515276   PMID:28581483   PMID:28718761   PMID:28727628   PMID:28803871   PMID:29053956   PMID:29117863   PMID:29128334   PMID:29229926   PMID:29467282   PMID:29467473   PMID:29507755  
PMID:29509190   PMID:29540532   PMID:29669786   PMID:29791485   PMID:29844126   PMID:29845934   PMID:29934401   PMID:29961565   PMID:30021884   PMID:30033366   PMID:30209976   PMID:30361697  
PMID:30425250   PMID:30575818   PMID:30833792   PMID:30890647   PMID:30945288   PMID:30948266   PMID:30979931   PMID:31048545   PMID:31059266   PMID:31067453   PMID:31091453   PMID:31180492  
PMID:31452512   PMID:31478661   PMID:31586073   PMID:31796584   PMID:31871319   PMID:31980649   PMID:32041737   PMID:32129710   PMID:32170730   PMID:32176628   PMID:32529326   PMID:32552912  
PMID:32665550   PMID:32780723   PMID:32807901   PMID:32814769   PMID:32850835   PMID:33194618   PMID:33226137   PMID:33564074   PMID:33644029   PMID:33729478   PMID:33731348   PMID:33762435  
PMID:33777788   PMID:33961781   PMID:34315543   PMID:34373451   PMID:34428256   PMID:34709727   PMID:34796874   PMID:34831298   PMID:35032548   PMID:35122331   PMID:35271311  


Genomics

Comparative Map Data
CAPZB
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38119,338,775 - 19,485,539 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl119,338,775 - 19,485,539 (-)EnsemblGRCh38hg38GRCh38
GRCh37119,665,269 - 19,812,033 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36119,537,860 - 19,684,579 (-)NCBINCBI36hg18NCBI36
Build 34119,411,069 - 19,491,551NCBI
Celera117,992,290 - 18,138,980 (-)NCBI
Cytogenetic Map1p36.13NCBI
HuRef117,911,593 - 18,058,372 (-)NCBIHuRef
CHM1_1119,774,569 - 19,921,335 (-)NCBICHM1_1
T2T-CHM13v2.0119,162,310 - 19,308,992 (-)NCBI
Capzb
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394138,920,210 - 139,019,131 (+)NCBIGRCm39mm39
GRCm39 Ensembl4138,920,210 - 139,019,129 (+)Ensembl
GRCm384139,192,899 - 139,291,820 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4139,192,899 - 139,291,818 (+)EnsemblGRCm38mm10GRCm38
MGSCv374138,748,846 - 138,847,727 (+)NCBIGRCm37mm9NCBIm37
MGSCv364138,465,007 - 138,563,888 (+)NCBImm8
Celera4140,979,100 - 141,078,244 (+)NCBICelera
Cytogenetic Map4D3NCBI
cM Map470.59NCBI
Capzb
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.25151,435,600 - 151,535,409 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl5151,434,871 - 151,535,409 (+)Ensembl
Rnor_6.05157,642,742 - 157,742,487 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5157,642,751 - 157,742,478 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05161,383,315 - 161,482,718 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45157,980,877 - 158,080,682 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.15157,990,915 - 158,090,719 (+)NCBI
Celera5149,816,061 - 149,915,748 (+)NCBICelera
Cytogenetic Map5q36NCBI
Capzb
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545230,589 - 169,693 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545234,454 - 168,514 (-)NCBIChiLan1.0ChiLan1.0
CAPZB
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1119,343,400 - 19,489,072 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl119,344,154 - 19,488,133 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0118,297,434 - 18,444,011 (-)NCBIMhudiblu_PPA_v0panPan3
CAPZB
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1279,182,668 - 79,311,529 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl279,181,851 - 79,311,518 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha275,695,344 - 75,825,750 (+)NCBI
ROS_Cfam_1.0279,804,060 - 79,934,792 (+)NCBI
ROS_Cfam_1.0 Ensembl279,804,081 - 79,934,830 (+)Ensembl
UMICH_Zoey_3.1276,565,507 - 76,695,821 (+)NCBI
UNSW_CanFamBas_1.0277,575,195 - 77,705,390 (+)NCBI
UU_Cfam_GSD_1.0278,644,515 - 78,775,092 (+)NCBI
Capzb
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505839,769,740 - 39,884,578 (-)NCBI
SpeTri2.0NW_0049364745,594,193 - 5,656,665 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CAPZB
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl677,780,681 - 77,912,617 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1677,780,682 - 77,912,653 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2671,842,816 - 71,985,460 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CAPZB
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120113,062,077 - 113,207,983 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl20113,062,192 - 113,210,430 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660332,951,087 - 3,096,887 (-)NCBIVero_WHO_p1.0
Capzb
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247644,473,606 - 4,601,286 (-)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_0046247644,473,880 - 4,601,260 (-)NCBIHetGla_female_1.0hetGla2

Position Markers
AL009488  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37119,749,546 - 19,749,728UniSTSGRCh37
Build 36119,622,133 - 19,622,315RGDNCBI36
Celera118,076,531 - 18,076,713RGD
Cytogenetic Map1p36.1UniSTS
HuRef117,995,878 - 17,996,060UniSTS
AL033889  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37119,674,414 - 19,674,553UniSTSGRCh37
Build 36119,547,001 - 19,547,140RGDNCBI36
Celera118,001,436 - 18,001,575RGD
Cytogenetic Map1p36.1UniSTS
HuRef117,920,726 - 17,920,865UniSTS
RH103414  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37119,718,749 - 19,718,889UniSTSGRCh37
Build 36119,591,336 - 19,591,476RGDNCBI36
Celera118,045,784 - 18,045,924RGD
Cytogenetic Map1p36.1UniSTS
HuRef117,965,100 - 17,965,240UniSTS
GeneMap99-GB4 RH Map175.38UniSTS
SHGC-147427  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37119,699,319 - 19,699,599UniSTSGRCh37
Build 36119,571,906 - 19,572,186RGDNCBI36
Celera118,026,354 - 18,026,634RGD
Cytogenetic Map1p36.1UniSTS
HuRef117,945,677 - 17,945,957UniSTS
SHGC-148894  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37119,715,092 - 19,715,415UniSTSGRCh37
Build 36119,587,679 - 19,588,002RGDNCBI36
Celera118,042,127 - 18,042,450RGD
Cytogenetic Map1p36.1UniSTS
HuRef117,961,463 - 17,961,786UniSTS
SHGC-107611  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37119,705,938 - 19,706,225UniSTSGRCh37
Build 36119,578,525 - 19,578,812RGDNCBI36
Celera118,032,973 - 18,033,260RGD
Cytogenetic Map1p36.1UniSTS
HuRef117,952,296 - 17,952,583UniSTS
SHGC-155098  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37119,796,772 - 19,797,044UniSTSGRCh37
Build 36119,669,359 - 19,669,631RGDNCBI36
Celera118,123,728 - 18,124,000RGD
Cytogenetic Map1p36.1UniSTS
HuRef118,043,122 - 18,043,394UniSTS
SHGC-74331  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37119,794,823 - 19,795,016UniSTSGRCh37
Build 36119,667,410 - 19,667,603RGDNCBI36
Celera118,121,779 - 18,121,972RGD
Cytogenetic Map1p36.1UniSTS
HuRef118,041,171 - 18,041,364UniSTS
GeneMap99-GB4 RH Map175.38UniSTS
SHGC-175  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37119,665,856 - 19,666,104UniSTSGRCh37
Build 36119,538,443 - 19,538,691RGDNCBI36
Celera117,992,879 - 17,993,127RGD
Cytogenetic Map17q23.3UniSTS
Cytogenetic Map1p36.1UniSTS
HuRef117,912,182 - 17,912,430UniSTS
GeneMap99-G3 RH Map11144.0UniSTS
D1S1674  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37119,802,599 - 19,802,806UniSTSGRCh37
Build 36119,675,186 - 19,675,393RGDNCBI36
Celera118,129,523 - 18,129,720RGD
Cytogenetic Map1p36.1UniSTS
HuRef118,048,917 - 18,049,112UniSTS
G35510  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map1q21UniSTS
Cytogenetic Map5q31.2UniSTS
Cytogenetic Map3q29UniSTS
Cytogenetic Map9q21.13UniSTS
Cytogenetic Map9q34.13UniSTS
Cytogenetic Map17p13.2UniSTS
Cytogenetic Map17q25.1UniSTS
Cytogenetic Map16q11.2UniSTS
Cytogenetic Map14q24.3UniSTS
Cytogenetic Map1q25.1UniSTS
Cytogenetic Map17q25UniSTS
Cytogenetic Map1q32.3UniSTS
Cytogenetic Map19p12UniSTS
Cytogenetic Map8p23.1UniSTS
Cytogenetic Map15q15.1UniSTS
Cytogenetic Map1q42UniSTS
Cytogenetic Map3q27.3UniSTS
Cytogenetic Map7q21.2UniSTS
Cytogenetic Map13q34UniSTS
Cytogenetic Map19p13UniSTS
Cytogenetic Map1p36.33UniSTS
Cytogenetic Map20q13.31UniSTS
Cytogenetic Map15q21.3UniSTS
Cytogenetic Map9p13.3UniSTS
Cytogenetic Map5q35.3UniSTS
Cytogenetic Map19p13.11UniSTS
Cytogenetic Map19q13.42UniSTS
Cytogenetic Map10q21.3UniSTS
Cytogenetic Map1p22UniSTS
Cytogenetic Map14q32.33UniSTS
Cytogenetic Map16p13.3UniSTS
Cytogenetic Map2p11.2UniSTS
Cytogenetic Map7q11.23UniSTS
Cytogenetic Map1p36.1UniSTS
Cytogenetic Map1q23.1UniSTS
Cytogenetic Map6p21.33UniSTS
Cytogenetic Map9q32UniSTS
Cytogenetic Map1q42.13UniSTS
Cytogenetic Map7q22.1UniSTS
Cytogenetic Map8p11.22UniSTS
Cytogenetic Map19q13.32UniSTS
Cytogenetic Map7p22.2UniSTS
Cytogenetic Map18p11.21UniSTS
Cytogenetic Map22q13.33UniSTS
Cytogenetic Map14q32.12UniSTS
Cytogenetic Map7q21.13UniSTS
Cytogenetic Map1p32.3UniSTS
Cytogenetic Map15q22.2UniSTS
Cytogenetic Map16p11.2UniSTS
Cytogenetic Map13q12.11UniSTS
Cytogenetic Map10p12UniSTS
Cytogenetic Map9q13-q21UniSTS
Cytogenetic Map11p15.4UniSTS
Cytogenetic Map4p16.3UniSTS
Cytogenetic Map9q22.3UniSTS
Cytogenetic Map7p12.3UniSTS
Cytogenetic Map1p34.3UniSTS
Cytogenetic Map17p13.3UniSTS
Cytogenetic Map20q11.2-q13.2UniSTS
Cytogenetic Map1p35.3UniSTS
Cytogenetic Map2q36.1UniSTS
Cytogenetic Map11q23.3UniSTS
Cytogenetic Map16q12.2UniSTS
Cytogenetic Map5q35UniSTS
Cytogenetic MapXp22UniSTS
Cytogenetic Map2q37.1UniSTS
Cytogenetic Map2p25-p24UniSTS
Cytogenetic Map16pUniSTS
Cytogenetic Map4q21.3UniSTS
Cytogenetic Map19q13.1UniSTS
Cytogenetic Map2q11.2UniSTS
Cytogenetic Map4q22.1UniSTS
Cytogenetic Map7q36.3UniSTS
Cytogenetic Map5q12.3UniSTS
Cytogenetic Map6q25.1UniSTS
Cytogenetic Map14q11.2UniSTS
Cytogenetic Map19q13.4UniSTS
Cytogenetic Map12q24.31-q24.32UniSTS
Cytogenetic Map1p35UniSTS
Cytogenetic Map1p34.2UniSTS
Cytogenetic Map2q14.3UniSTS
Cytogenetic MapXp11UniSTS
Cytogenetic Map1q21.3UniSTS
Cytogenetic Map14q32.31UniSTS
Cytogenetic MapXp11.3UniSTS
Cytogenetic Map12q22UniSTS
Cytogenetic Map12q15UniSTS
Cytogenetic Map9p12UniSTS
Cytogenetic Map1p35.1UniSTS
Cytogenetic Map19q13.11UniSTS
Cytogenetic Map7p14.3UniSTS
Cytogenetic Map14q13.2UniSTS
Cytogenetic Map15q21UniSTS
Cytogenetic Map1p36.31UniSTS
Cytogenetic Map12q24.31UniSTS
Cytogenetic Map6p21.1UniSTS
Cytogenetic Map2q31.1UniSTS
Cytogenetic Map20p12.1UniSTS
Cytogenetic Map6pter-q22.33UniSTS
Cytogenetic Map14q32.2UniSTS
Cytogenetic Map7q36.1UniSTS
Cytogenetic Map2q32.1UniSTS
Cytogenetic Map9q21.33UniSTS
Cytogenetic Map17q23.3UniSTS
Cytogenetic Map10p13UniSTS
Cytogenetic Map9q34.11UniSTS
Cytogenetic Map11q14.2-q21UniSTS
Cytogenetic Map15q22.31UniSTS
Cytogenetic Map11q22-q23UniSTS
Cytogenetic Map14q12UniSTS
Cytogenetic Map1q25UniSTS
Cytogenetic Map7p11.2UniSTS
Cytogenetic Map4q13.3UniSTS
Cytogenetic Map19p13.2UniSTS
Cytogenetic Map17q24.1UniSTS
Cytogenetic Map14q21UniSTS
Cytogenetic Map8q11.2UniSTS
Cytogenetic Map3q28UniSTS
Cytogenetic Map9p21.3UniSTS
Cytogenetic Map7p15.1UniSTS
Cytogenetic Map1q41UniSTS
Cytogenetic Map8p21.3UniSTS
Cytogenetic Map2q37.3UniSTS
Cytogenetic Map15q14-q15UniSTS
Cytogenetic Map5q31-q32UniSTS
Cytogenetic Map18p11.2UniSTS
Cytogenetic Map21q22.11UniSTS
Cytogenetic Map11p15.5UniSTS
Cytogenetic Map13q14.3UniSTS
Cytogenetic Map3p22.2UniSTS
Cytogenetic Map6p12.1UniSTS
Cytogenetic Map6p21.3UniSTS
Cytogenetic Map13q14.11UniSTS
Cytogenetic Map7p14.1UniSTS
Cytogenetic Map19p13.13UniSTS
Cytogenetic Map12p13.33UniSTS
Cytogenetic Map18p11.22-p11.21UniSTS
Cytogenetic Map5q34-q35UniSTS
Cytogenetic Map7q11.21UniSTS
Cytogenetic MapXp11.4UniSTS
Cytogenetic Map2p25.3UniSTS
Cytogenetic Map9q34UniSTS
Cytogenetic Map20q13.12UniSTS
Cytogenetic Map8q22.1UniSTS
Cytogenetic Map16q24.3UniSTS
Cytogenetic Map3q23UniSTS
Cytogenetic Map12q23.3UniSTS
Cytogenetic Map11q13.1UniSTS
Cytogenetic Map7q34UniSTS
Cytogenetic Map9q21.11UniSTS
Cytogenetic Map16q23.1UniSTS
Cytogenetic Map17q24.3UniSTS
Cytogenetic Map7p14.2UniSTS
Cytogenetic Map1q23.3UniSTS
Cytogenetic Map9q34.3UniSTS
Cytogenetic Map1p36.2UniSTS
Cytogenetic Map12q14.1UniSTS
Cytogenetic Map19q13UniSTS
Cytogenetic Map8p12UniSTS
Cytogenetic Map7p22.1UniSTS
Cytogenetic Map6p24.1UniSTS
Cytogenetic Map6p21.2UniSTS
Cytogenetic Map11q13.4UniSTS
Cytogenetic Map11q13.3UniSTS
Cytogenetic Map1p33-p32UniSTS
Cytogenetic Map5q35.2UniSTS
Cytogenetic Map3p14.3UniSTS
Cytogenetic Map16p13.2UniSTS
Cytogenetic Map17q21.31UniSTS
Cytogenetic Map10q26.1UniSTS
Cytogenetic Map4q26UniSTS
Cytogenetic Map12q13.1-q13.2UniSTS
Cytogenetic Map1p36.11UniSTS
Cytogenetic Map16q24.1UniSTS
Cytogenetic Map19q13.2UniSTS
Cytogenetic Map3q13.2UniSTS
Cytogenetic Map3p24.3UniSTS
Cytogenetic Map2q13UniSTS
Cytogenetic Map1q42.3UniSTS
Cytogenetic Map19p13.3UniSTS
Cytogenetic Map17p13.1UniSTS
Cytogenetic MapXp22.32UniSTS
Cytogenetic MapYp11.3UniSTS
Cytogenetic Map20q13.13UniSTS
Cytogenetic Map20q11.21UniSTS
Cytogenetic Map5p13.2UniSTS
Cytogenetic Map6q13UniSTS
Cytogenetic Map19q13.31UniSTS
Cytogenetic Map18q11.2UniSTS
Cytogenetic Map15q25.2UniSTS
Cytogenetic Map16q22.1UniSTS
Cytogenetic Map20p13UniSTS
Cytogenetic Map1q23.2UniSTS
Cytogenetic Map15q15.3UniSTS
Cytogenetic Map17q12UniSTS
Cytogenetic Map15q13.3UniSTS
Cytogenetic MapXp21.1UniSTS
Cytogenetic Map19q13.43UniSTS
Cytogenetic Map8q13.1UniSTS
Cytogenetic Map15q21.2UniSTS
Cytogenetic Map6pter-p12.1UniSTS
Cytogenetic Map6p24.3UniSTS
Cytogenetic Map11q13.2UniSTS
Cytogenetic Map13q14UniSTS
Cytogenetic Map17pUniSTS
Cytogenetic Map3p26UniSTS
Cytogenetic Map1p34UniSTS
Cytogenetic Map12q13.11UniSTS
Cytogenetic Map17q25.3UniSTS
Cytogenetic Map8q24.3UniSTS
Cytogenetic Map17q23.2UniSTS
Cytogenetic Map14q22.3UniSTS
Cytogenetic Map14q23.3UniSTS
Cytogenetic Map20q13.33UniSTS
D10S275  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map21q21.3UniSTS
Cytogenetic Map17q24.2UniSTS
Cytogenetic Map1q32.1UniSTS
Cytogenetic Map13q12.13UniSTS
Cytogenetic Map5q31.2UniSTS
Cytogenetic Map10q11.22UniSTS
Cytogenetic Map22q13.33UniSTS
Cytogenetic Map2p25.1UniSTS
Cytogenetic Map4q12UniSTS
Cytogenetic Map19p13.12UniSTS
Cytogenetic Map7p13UniSTS
Cytogenetic Map2q11.2UniSTS
Cytogenetic Map17q25.1UniSTS
Cytogenetic Map8q24.13UniSTS
Cytogenetic Map19q13.12UniSTS
Cytogenetic Map16q22.2UniSTS
Cytogenetic Map16q11.2UniSTS
Cytogenetic Map14q24.3UniSTS
Cytogenetic Map6q22UniSTS
Cytogenetic Map2q33.1UniSTS
Cytogenetic Map20q11UniSTS
Cytogenetic Map5q31.1UniSTS
Cytogenetic Map4q32.3UniSTS
Cytogenetic Map3p22.1UniSTS
Cytogenetic Map1p35.2UniSTS
Cytogenetic Map19q13.3UniSTS
Cytogenetic Map14q24UniSTS
Cytogenetic Map14q22-q24UniSTS
Cytogenetic Map1p21.2UniSTS
Cytogenetic Map12q24.31UniSTS
Cytogenetic Map14q11.2UniSTS
Cytogenetic Map20q13.31UniSTS
Cytogenetic Map19p13.3UniSTS
Cytogenetic Map5q35.3UniSTS
Cytogenetic Map1p36.13UniSTS
Cytogenetic Map4q35.1UniSTS
Cytogenetic MapXp11.3UniSTS
Cytogenetic Map16q24UniSTS
Cytogenetic Map16p13.3UniSTS
Cytogenetic Map16q12.1UniSTS
Cytogenetic Map1p36.1UniSTS
Cytogenetic Map22q12.3UniSTS
Cytogenetic Map6p21.33UniSTS
Cytogenetic Map10p11UniSTS
Cytogenetic Map1p13.1UniSTS
Cytogenetic Map7q22.1UniSTS
Cytogenetic Map19q13.32UniSTS
Cytogenetic Map7p22.2UniSTS
Cytogenetic MapXq22.1UniSTS
Cytogenetic Map16q21UniSTS
Cytogenetic Map1p36.31UniSTS
Cytogenetic Map3q12.3UniSTS
Cytogenetic Map6q24UniSTS
Cytogenetic Map3p21.31UniSTS
Cytogenetic Map9q13-q21UniSTS
Cytogenetic Map3p25UniSTS
Cytogenetic Map6p21.3UniSTS
Cytogenetic Map7q22.3UniSTS
Cytogenetic Map9q22UniSTS
Cytogenetic Map12q13.3UniSTS
Cytogenetic Map1q21-q23UniSTS
Cytogenetic Map5q23.3UniSTS
Cytogenetic Map20q13UniSTS
Cytogenetic Map1p35.1UniSTS
Cytogenetic Map1p32.3UniSTS
Cytogenetic Map21q22.13UniSTS
Cytogenetic Map19q13.2UniSTS
Cytogenetic Map19q13.43UniSTS
Cytogenetic Map22q13.2UniSTS
Cytogenetic MapXp22.2-p22.1UniSTS
Cytogenetic Map7q11.23UniSTS
Cytogenetic Map10q26.13UniSTS
Cytogenetic Map2q33.2UniSTS
Cytogenetic Map8q24.3UniSTS
Cytogenetic Map20pter-q11.23UniSTS
Cytogenetic Map4p16.3UniSTS
Cytogenetic Map10p12.1UniSTS
Cytogenetic Map10p12.3UniSTS
Cytogenetic Map12p13.3UniSTS
Cytogenetic Map3q27UniSTS
Cytogenetic Map17p13.2UniSTS
Cytogenetic Map1p34.2UniSTS
Cytogenetic Map21q22.3UniSTS
Cytogenetic Map2q14.3UniSTS
Cytogenetic Map3p14.1UniSTS
Cytogenetic Map3q26.3UniSTS
Cytogenetic Map1q21.3UniSTS
Cytogenetic Map14q32.31UniSTS
Cytogenetic Map17q22UniSTS
Cytogenetic Map2p16.1UniSTS
Cytogenetic Map3q27.1UniSTS
Cytogenetic Map22q13UniSTS
Cytogenetic Map11q22.3UniSTS
Cytogenetic Map9q21.13UniSTS
Cytogenetic Map16p11.2UniSTS
Cytogenetic Map10q24.31UniSTS
Cytogenetic Map9q22.31UniSTS
Cytogenetic Map15q21UniSTS
Cytogenetic Map17p13.1UniSTS
Cytogenetic Map15q25.2UniSTS
Cytogenetic Map12p12UniSTS
Cytogenetic Map3q13.31UniSTS
Cytogenetic Map5q23.2UniSTS
Cytogenetic Map22q11.2UniSTS
Cytogenetic Map1q24-q25.3UniSTS
Cytogenetic Map7p11UniSTS
Cytogenetic Map2q32.1UniSTS
Cytogenetic Map17q23.3UniSTS
Cytogenetic MapXq13-q21UniSTS
Cytogenetic Map6p24.3UniSTS
Cytogenetic Map11p15.4UniSTS
Cytogenetic Map1q21.2-q21.3UniSTS
Cytogenetic Map6q25.2-q27UniSTS
Cytogenetic Map11q23UniSTS
Cytogenetic Map9q34UniSTS
Cytogenetic Map12q24.32UniSTS
Cytogenetic MapXq13.1UniSTS
Cytogenetic Map10q11.21UniSTS
Cytogenetic Map14q32.3UniSTS
Cytogenetic Map13q12-q14UniSTS
Cytogenetic MapXp11.23UniSTS
Cytogenetic Map22q11.21UniSTS
Cytogenetic Map1p36.11UniSTS
Cytogenetic Map2p11.2UniSTS
Cytogenetic Map1q21.2UniSTS
Cytogenetic Map14q23.1UniSTS
Cytogenetic Map20q13.3UniSTS
Cytogenetic Map2q24.1UniSTS
Cytogenetic Map10q25.3UniSTS
Cytogenetic Map14q31UniSTS
Cytogenetic Map15q25.1UniSTS
Cytogenetic Map15q26.1UniSTS
Cytogenetic Map8p21.1UniSTS
Cytogenetic Map2p15UniSTS
Cytogenetic Map17q23.2UniSTS
Cytogenetic Map11p14.3UniSTS
Cytogenetic Map9q33.3UniSTS
Cytogenetic Map1p13.3UniSTS
Cytogenetic Map4q13UniSTS
Cytogenetic MapXq12UniSTS
Cytogenetic Map3p25.3UniSTS
Cytogenetic Map1p34.3UniSTS
Cytogenetic Map19q13.42UniSTS
Cytogenetic Map16q24.3UniSTS
Cytogenetic MapXp11.4UniSTS
Cytogenetic Map7q34UniSTS
Cytogenetic Map2p25.3UniSTS
Cytogenetic Map1q41UniSTS
Cytogenetic Map5q14.1UniSTS
Cytogenetic Map15q15.2UniSTS
Cytogenetic Map12p11.21UniSTS
Cytogenetic Map5p13.1UniSTS
Cytogenetic Map7q31.3UniSTS
Cytogenetic Map2q35UniSTS
Cytogenetic Map16q23.1UniSTS
Cytogenetic Map12q13.13UniSTS
Cytogenetic Map1p21UniSTS
Cytogenetic MapXq24UniSTS
Cytogenetic Map7p14.2UniSTS
Cytogenetic Map6q24.3UniSTS
Cytogenetic Map22q13.31UniSTS
Cytogenetic Map9p24.3UniSTS
Cytogenetic Map6q12-q13UniSTS
Cytogenetic Map19q13UniSTS
Cytogenetic Map9q31-q33UniSTS
Cytogenetic Map9q34.1UniSTS
Cytogenetic Map17p11.2UniSTS
Cytogenetic Map14q32UniSTS
Cytogenetic Map3p14.3UniSTS
Cytogenetic Map8p11.21UniSTS
Cytogenetic Map16p12.3UniSTS
Cytogenetic Map9q31.3UniSTS
Cytogenetic Map9p13.2UniSTS
Cytogenetic Map5q13.2UniSTS
Cytogenetic Map18q23UniSTS
Cytogenetic Map8p22UniSTS
Cytogenetic Map17p13UniSTS
Cytogenetic Map19p12UniSTS
Cytogenetic Map8p21.2UniSTS
Cytogenetic Map12q13.11UniSTS
Cytogenetic Map1q32.3UniSTS
Cytogenetic Map1p33UniSTS
Cytogenetic Map19q13.31UniSTS
Cytogenetic Map6p21UniSTS
Cytogenetic Map17q21.31UniSTS
Cytogenetic Map3p22.2UniSTS
Cytogenetic Map17q12UniSTS
Cytogenetic MapXp21.1UniSTS
Cytogenetic Map12q13UniSTS
Cytogenetic Map11q13.2UniSTS
Cytogenetic Map11p15.1UniSTS
Cytogenetic Map1q43UniSTS
Cytogenetic Map19p13.2UniSTS
Cytogenetic Map15q21.2UniSTS
Cytogenetic Map9q22.2UniSTS
Cytogenetic MapXp22UniSTS
Cytogenetic Map13q14UniSTS
Cytogenetic Map3p21.3UniSTS
Cytogenetic Map7q22UniSTS
Cytogenetic Map2p22UniSTS
Cytogenetic Map11q13.1UniSTS
Cytogenetic Map3p25.2UniSTS
Cytogenetic Map14q22.3UniSTS
Cytogenetic Map2p14UniSTS

miRNA Target Status

Confirmed Target Of
miRNA GeneMature miRNAMethod NameResult TypeData TypeSupport TypePMID
MIR3934hsa-miR-3934-5pMirtarbaseexternal_infoCLASHFunctional MTI (Weak)23622248

Predicted Target Of
Summary Value
Count of predictions:3546
Count of miRNA genes:949
Interacting mature miRNAs:1112
Transcripts:ENST00000264202, ENST00000264203, ENST00000375142, ENST00000375144, ENST00000401084, ENST00000413711, ENST00000433834, ENST00000457768, ENST00000459967, ENST00000482808, ENST00000489607
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High 4
Medium 2439 2982 1724 622 1950 463 4357 2189 3732 418 1456 1613 175 1 1204 2788 6 2
Low 9 2 2 1 2 8 2 1
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NG_029551 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001206540 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001206541 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001282162 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001313932 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_004930 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006710938 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011542228 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011542229 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011542230 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017002428 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017002429 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017002430 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024450096 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024450097 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047431397 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047431400 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047431404 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AI799520 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK022336 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK125085 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK126650 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK301442 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK313113 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL035413 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL359199 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL445163 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC008095 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC012305 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC024601 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC069031 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC107752 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC109241 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC109242 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BE870234 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BQ009850 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BQ773230 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BT019470 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BT019471 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX647941 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB267021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB993069 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471134 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CN273493 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068277 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EB387955 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GQ900984 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HY021163 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KF495883 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U03271 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENST00000264202   ⟹   ENSP00000264202
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl119,338,775 - 19,485,539 (-)Ensembl
RefSeq Acc Id: ENST00000264203   ⟹   ENSP00000264203
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl119,338,776 - 19,485,513 (-)Ensembl
RefSeq Acc Id: ENST00000375142   ⟹   ENSP00000364284
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl119,338,823 - 19,485,485 (-)Ensembl
RefSeq Acc Id: ENST00000375144   ⟹   ENSP00000364286
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl119,339,245 - 19,485,537 (-)Ensembl
RefSeq Acc Id: ENST00000433834   ⟹   ENSP00000401010
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl119,339,359 - 19,484,664 (-)Ensembl
RefSeq Acc Id: ENST00000457768
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl119,356,747 - 19,385,797 (-)Ensembl
RefSeq Acc Id: ENST00000459967
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl119,356,655 - 19,485,539 (-)Ensembl
RefSeq Acc Id: ENST00000482808
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl119,339,137 - 19,485,537 (-)Ensembl
RefSeq Acc Id: ENST00000489607
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl119,357,522 - 19,420,144 (-)Ensembl
RefSeq Acc Id: ENST00000674228   ⟹   ENSP00000501330
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl119,339,374 - 19,419,737 (-)Ensembl
RefSeq Acc Id: ENST00000674278   ⟹   ENSP00000501392
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl119,374,048 - 19,385,564 (-)Ensembl
RefSeq Acc Id: ENST00000674299
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl119,339,137 - 19,346,362 (-)Ensembl
RefSeq Acc Id: ENST00000674390
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl119,339,231 - 19,484,891 (-)Ensembl
RefSeq Acc Id: ENST00000674432   ⟹   ENSP00000501528
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl119,339,325 - 19,485,537 (-)Ensembl
RefSeq Acc Id: ENST00000674449   ⟹   ENSP00000501388
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl119,339,137 - 19,485,477 (-)Ensembl
RefSeq Acc Id: NM_001206540   ⟹   NP_001193469
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38119,338,775 - 19,485,539 (-)NCBI
GRCh37119,665,267 - 19,812,066 (-)ENTREZGENE
HuRef117,911,593 - 18,058,441 (-)NCBI
CHM1_1119,774,569 - 19,921,404 (-)NCBI
T2T-CHM13v2.0119,162,310 - 19,308,992 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001206541   ⟹   NP_001193470
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38119,338,775 - 19,485,539 (-)NCBI
HuRef117,911,593 - 18,058,441 (-)NCBI
CHM1_1119,774,569 - 19,921,404 (-)NCBI
T2T-CHM13v2.0119,162,310 - 19,308,992 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001282162   ⟹   NP_001269091
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38119,338,775 - 19,484,295 (-)NCBI
HuRef117,911,593 - 18,058,441 (-)NCBI
CHM1_1119,774,569 - 19,920,470 (-)NCBI
T2T-CHM13v2.0119,162,310 - 19,307,748 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001313932   ⟹   NP_001300861
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38119,374,175 - 19,485,539 (-)NCBI
CHM1_1119,810,010 - 19,921,404 (-)NCBI
T2T-CHM13v2.0119,197,712 - 19,308,992 (-)NCBI
Sequence:
RefSeq Acc Id: NM_004930   ⟹   NP_004921
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38119,338,775 - 19,485,539 (-)NCBI
GRCh37119,665,267 - 19,812,066 (-)RGD
Build 36119,537,860 - 19,684,579 (-)NCBI Archive
Celera117,992,290 - 18,138,980 (-)RGD
HuRef117,911,593 - 18,058,441 (-)NCBI
CHM1_1119,774,569 - 19,921,404 (-)NCBI
T2T-CHM13v2.0119,162,310 - 19,308,992 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006710938   ⟹   XP_006711001
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38119,338,775 - 19,452,230 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011542228   ⟹   XP_011540530
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38119,338,775 - 19,484,295 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017002429   ⟹   XP_016857918
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38119,374,175 - 19,484,295 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017002430   ⟹   XP_016857919
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38119,376,323 - 19,484,295 (-)NCBI
Sequence:
RefSeq Acc Id: XM_047431397   ⟹   XP_047287353
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38119,338,775 - 19,452,230 (-)NCBI
RefSeq Acc Id: XM_047431400   ⟹   XP_047287356
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38119,338,775 - 19,439,920 (-)NCBI
RefSeq Acc Id: XM_047431404   ⟹   XP_047287360
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38119,338,775 - 19,427,466 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001193469 (Get FASTA)   NCBI Sequence Viewer  
  NP_001193470 (Get FASTA)   NCBI Sequence Viewer  
  NP_001269091 (Get FASTA)   NCBI Sequence Viewer  
  NP_001300861 (Get FASTA)   NCBI Sequence Viewer  
  NP_004921 (Get FASTA)   NCBI Sequence Viewer  
  XP_006711001 (Get FASTA)   NCBI Sequence Viewer  
  XP_011540530 (Get FASTA)   NCBI Sequence Viewer  
  XP_016857918 (Get FASTA)   NCBI Sequence Viewer  
  XP_016857919 (Get FASTA)   NCBI Sequence Viewer  
  XP_047287353 (Get FASTA)   NCBI Sequence Viewer  
  XP_047287356 (Get FASTA)   NCBI Sequence Viewer  
  XP_047287360 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA87395 (Get FASTA)   NCBI Sequence Viewer  
  AAH08095 (Get FASTA)   NCBI Sequence Viewer  
  AAH24601 (Get FASTA)   NCBI Sequence Viewer  
  AAI07753 (Get FASTA)   NCBI Sequence Viewer  
  AAI09242 (Get FASTA)   NCBI Sequence Viewer  
  AAI09243 (Get FASTA)   NCBI Sequence Viewer  
  AAV38277 (Get FASTA)   NCBI Sequence Viewer  
  AAV38278 (Get FASTA)   NCBI Sequence Viewer  
  ADO22501 (Get FASTA)   NCBI Sequence Viewer  
  BAG35935 (Get FASTA)   NCBI Sequence Viewer  
  BAG54137 (Get FASTA)   NCBI Sequence Viewer  
  BAG62968 (Get FASTA)   NCBI Sequence Viewer  
  EAW94888 (Get FASTA)   NCBI Sequence Viewer  
  EAW94889 (Get FASTA)   NCBI Sequence Viewer  
  EAW94890 (Get FASTA)   NCBI Sequence Viewer  
  EAW94891 (Get FASTA)   NCBI Sequence Viewer  
  P47756 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_004921   ⟸   NM_004930
- Peptide Label: isoform 1
- UniProtKB: P47756 (UniProtKB/Swiss-Prot),   Q7L4N0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001193469   ⟸   NM_001206540
- Peptide Label: isoform 2
- UniProtKB: P47756 (UniProtKB/Swiss-Prot),   Q7L4N0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001193470   ⟸   NM_001206541
- Peptide Label: isoform 3
- UniProtKB: B1AK85 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001269091   ⟸   NM_001282162
- Peptide Label: isoform 4
- UniProtKB: P47756 (UniProtKB/Swiss-Prot),   B1AK88 (UniProtKB/TrEMBL),   B4DWA6 (UniProtKB/TrEMBL),   Q7L4N0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006711001   ⟸   XM_006710938
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_011540530   ⟸   XM_011542228
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: NP_001300861   ⟸   NM_001313932
- Peptide Label: isoform 5
- Sequence:
RefSeq Acc Id: XP_016857918   ⟸   XM_017002429
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_016857919   ⟸   XM_017002430
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: ENSP00000501388   ⟸   ENST00000674449
RefSeq Acc Id: ENSP00000501528   ⟸   ENST00000674432
RefSeq Acc Id: ENSP00000501330   ⟸   ENST00000674228
RefSeq Acc Id: ENSP00000501392   ⟸   ENST00000674278
RefSeq Acc Id: ENSP00000364286   ⟸   ENST00000375144
RefSeq Acc Id: ENSP00000364284   ⟸   ENST00000375142
RefSeq Acc Id: ENSP00000401010   ⟸   ENST00000433834
RefSeq Acc Id: ENSP00000264203   ⟸   ENST00000264203
RefSeq Acc Id: ENSP00000264202   ⟸   ENST00000264202
RefSeq Acc Id: XP_047287353   ⟸   XM_047431397
- Peptide Label: isoform X3
RefSeq Acc Id: XP_047287356   ⟸   XM_047431400
- Peptide Label: isoform X4
RefSeq Acc Id: XP_047287360   ⟸   XM_047431404
- Peptide Label: isoform X4

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P47756-F1-model_v2 AlphaFold P47756 1-277 view protein structure

Promoters
RGD ID:6854330
Promoter ID:EPDNEW_H329
Type:initiation region
Name:CAPZB_2
Description:capping actin protein of muscle Z-line beta subunit
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H331  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38119,419,762 - 19,419,822EPDNEW
RGD ID:6854334
Promoter ID:EPDNEW_H331
Type:initiation region
Name:CAPZB_1
Description:capping actin protein of muscle Z-line beta subunit
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H329  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38119,485,533 - 19,485,593EPDNEW
RGD ID:6784852
Promoter ID:HG_KWN:1095
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Lymphoblastoid
Transcripts:OTTHUMT00000007265,   OTTHUMT00000007266
Position:
Human AssemblyChrPosition (strand)Source
Build 36119,683,321 - 19,683,972 (-)MPROMDB
RGD ID:6851398
Promoter ID:EP73499
Type:initiation region
Name:HS_CAPZB
Description:Capping protein (actin filament) muscle Z-line, beta.
SO ACC ID:SO:0000170
Source:EPD (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:NEDO full length human cDNA sequencing project.; Oligo-capping
Position:
Human AssemblyChrPosition (strand)Source
Build 36119,684,614 - 19,684,674EPD
RGD ID:6785145
Promoter ID:HG_KWN:1096
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   HeLa_S3,   Jurkat,   K562,   Lymphoblastoid,   NB4
Transcripts:ENST00000264202,   ENST00000264203,   ENST00000375142,   ENST00000401082,   NM_004930,   OTTHUMT00000007263,   OTTHUMT00000007264
Position:
Human AssemblyChrPosition (strand)Source
Build 36119,684,726 - 19,685,226 (-)MPROMDB

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 1p36.21-36.12(chr1:15385267-20980349)x1 copy number loss See cases [RCV000051146] Chr1:15385267..20980349 [GRCh38]
Chr1:15711763..21306842 [GRCh37]
Chr1:15584350..21179429 [NCBI36]
Chr1:1p36.21-36.12		 pathogenic
GRCh38/hg38 1p36.21-36.12(chr1:13110797-20670207)x3 copy number gain See cases [RCV000051797] Chr1:13110797..20670207 [GRCh38]
Chr1:13178269..20996700 [GRCh37]
Chr1:13100856..20869287 [NCBI36]
Chr1:1p36.21-36.12		 pathogenic
GRCh38/hg38 1p36.22-36.12(chr1:10556797-22557907)x1 copy number loss See cases [RCV000053760] Chr1:10556797..22557907 [GRCh38]
Chr1:10616854..22884400 [GRCh37]
Chr1:10539441..22756987 [NCBI36]
Chr1:1p36.22-36.12		 pathogenic
GRCh38/hg38 1p36.13-36.12(chr1:18347821-22512894)x1 copy number loss See cases [RCV000053789] Chr1:18347821..22512894 [GRCh38]
Chr1:18674315..22839387 [GRCh37]
Chr1:18546902..22711974 [NCBI36]
Chr1:1p36.13-36.12		 pathogenic
GRCh38/hg38 1p36.13(chr1:18989947-19499528)x1 copy number loss Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053791]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053791]|See cases [RCV000053791] Chr1:18989947..19499528 [GRCh38]
Chr1:19316441..19826022 [GRCh37]
Chr1:19189028..19698609 [NCBI36]
Chr1:1p36.13		 pathogenic
GRCh38/hg38 1p36.13(chr1:19093306-20063342)x1 copy number loss See cases [RCV000053793] Chr1:19093306..20063342 [GRCh38]
Chr1:19419800..20389835 [GRCh37]
Chr1:19292387..20262422 [NCBI36]
Chr1:1p36.13		 pathogenic
GRCh38/hg38 1p36.21-36.13(chr1:15681812-19662339)x1 copy number loss See cases [RCV000138070] Chr1:15681812..19662339 [GRCh38]
Chr1:16008307..19988832 [GRCh37]
Chr1:15880894..19861419 [NCBI36]
Chr1:1p36.21-36.13		 pathogenic
GRCh38/hg38 1p36.13(chr1:19169253-19797307)x3 copy number gain See cases [RCV000141322] Chr1:19169253..19797307 [GRCh38]
Chr1:19495747..20123800 [GRCh37]
Chr1:19368334..19996387 [NCBI36]
Chr1:1p36.13		 likely benign
GRCh38/hg38 1p36.13(chr1:19169253-19415934)x1 copy number loss See cases [RCV000140822] Chr1:19169253..19415934 [GRCh38]
Chr1:19495747..19742428 [GRCh37]
Chr1:19368334..19615015 [NCBI36]
Chr1:1p36.13		 uncertain significance
GRCh37/hg19 1p36.13-36.12(chr1:19809419-20418333)x3 copy number gain See cases [RCV000239783] Chr1:19809419..20418333 [GRCh37]
Chr1:1p36.13-36.12		 uncertain significance
Single allele complex Ductal breast carcinoma [RCV000207058] Chr1:909238..24706269 [GRCh37]
Chr1:1p36.33-36.11		 uncertain significance
chr1:17555508-24706269 complex variant complex Ductal breast carcinoma [RCV000207266] Chr1:17555508..24706269 [GRCh37]
Chr1:1p36.13-36.11		 uncertain significance
GRCh37/hg19 1p36.32-36.12(chr1:2749920-22564787)x1 copy number loss See cases [RCV000446470] Chr1:2749920..22564787 [GRCh37]
Chr1:1p36.32-36.12		 pathogenic
GRCh37/hg19 1p36.21-36.13(chr1:13178371-19961858)x1 copy number loss See cases [RCV000447987] Chr1:13178371..19961858 [GRCh37]
Chr1:1p36.21-36.13		 pathogenic
GRCh37/hg19 1p36.33-q44(chr1:849467-249224684)x3 copy number gain See cases [RCV000510383] Chr1:849467..249224684 [GRCh37]
Chr1:1p36.33-q44		 pathogenic
GRCh37/hg19 1p36.33-q44(chr1:849467-249224684) copy number gain See cases [RCV000510926] Chr1:849467..249224684 [GRCh37]
Chr1:1p36.33-q44		 pathogenic
GRCh37/hg19 1p36.33-q44(chr1:47851-249228449)x3 copy number gain not provided [RCV000736295] Chr1:47851..249228449 [GRCh37]
Chr1:1p36.33-q44		 pathogenic
GRCh37/hg19 1p36.33-q44(chr1:82154-249218992)x3 copy number gain not provided [RCV000736305] Chr1:82154..249218992 [GRCh37]
Chr1:1p36.33-q44		 pathogenic
GRCh37/hg19 1p36.22-21.1(chr1:103343285-103455144)x3 copy number gain Global developmental delay [RCV000787285] Chr1:103343285..103455144 [GRCh37]
Chr1:1p36.22-21.1		 uncertain significance
GRCh37/hg19 1p36.13-36.12(chr1:16785250-23491592)x1 copy number loss 1p36.1 deletion syndrome [RCV001614471] Chr1:16785250..23491592 [GRCh37]
Chr1:1p36.13-36.12		 pathogenic
GRCh37/hg19 1p36.13(chr1:19809464-20123500)x3 copy number gain not provided [RCV001259566] Chr1:19809464..20123500 [GRCh37]
Chr1:1p36.13		 uncertain significance
GRCh37/hg19 1p36.13-36.12(chr1:17284906-21778495)x1 copy number loss not provided [RCV001259567] Chr1:17284906..21778495 [GRCh37]
Chr1:1p36.13-36.12		 pathogenic
GRCh37/hg19 1p36.21-36.12(chr1:16041431-21295864)x1 copy number loss not provided [RCV001259568] Chr1:16041431..21295864 [GRCh37]
Chr1:1p36.21-36.12		 pathogenic
GRCh37/hg19 1p36.13(chr1:16773001-20221073)x1 copy number loss not provided [RCV001829114] Chr1:16773001..20221073 [GRCh37]
Chr1:1p36.13		 pathogenic

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:1491 AgrOrtholog
COSMIC CAPZB COSMIC
Ensembl Genes ENSG00000077549 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSP00000264202 ENTREZGENE
  ENSP00000264202.7 UniProtKB/Swiss-Prot
  ENSP00000264203 ENTREZGENE
  ENSP00000264203.3 UniProtKB/TrEMBL
  ENSP00000364284 ENTREZGENE
  ENSP00000364284.1 UniProtKB/Swiss-Prot
  ENSP00000364286.2 UniProtKB/TrEMBL
  ENSP00000401010 ENTREZGENE
  ENSP00000401010.1 UniProtKB/TrEMBL
  ENSP00000501330.1 UniProtKB/TrEMBL
  ENSP00000501388.1 UniProtKB/TrEMBL
  ENSP00000501392.1 UniProtKB/TrEMBL
  ENSP00000501528.1 UniProtKB/Swiss-Prot
Ensembl Transcript ENST00000264202 ENTREZGENE
  ENST00000264202.8 UniProtKB/Swiss-Prot
  ENST00000264203 ENTREZGENE
  ENST00000264203.7 UniProtKB/TrEMBL
  ENST00000375142 ENTREZGENE
  ENST00000375142.5 UniProtKB/Swiss-Prot
  ENST00000375144.6 UniProtKB/TrEMBL
  ENST00000433834 ENTREZGENE
  ENST00000433834.5 UniProtKB/TrEMBL
  ENST00000674228.1 UniProtKB/TrEMBL
  ENST00000674278.1 UniProtKB/TrEMBL
  ENST00000674432.1 UniProtKB/Swiss-Prot
  ENST00000674449.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.58.570 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.90.1150.210 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000077549 GTEx
HGNC ID HGNC:1491 ENTREZGENE
Human Proteome Map CAPZB Human Proteome Map
InterPro CapZ_alpha/beta UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CapZ_alpha/beta_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CAPZB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CAPZB_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  F-actin_capping_bsu_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:832 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene 832 ENTREZGENE
OMIM 601572 OMIM
PANTHER PTHR10619 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam F_actin_cap_B UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA26072 PharmGKB
PRINTS FACTINCAPB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE F_ACTIN_CAPPING_BETA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF90096 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A384MR50_HUMAN UniProtKB/TrEMBL
  A0A6I8PIH4_HUMAN UniProtKB/TrEMBL
  A0A6I8PIN8_HUMAN UniProtKB/TrEMBL
  A0A6I8PRV6_HUMAN UniProtKB/TrEMBL
  B1AK85 ENTREZGENE, UniProtKB/TrEMBL
  B1AK87_HUMAN UniProtKB/TrEMBL
  B1AK88 ENTREZGENE, UniProtKB/TrEMBL
  B4DWA6 ENTREZGENE, UniProtKB/TrEMBL
  CAPZB_HUMAN UniProtKB/Swiss-Prot, ENTREZGENE
  Q7L4N0 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary Q32Q68 UniProtKB/Swiss-Prot
  Q5U0L4 UniProtKB/Swiss-Prot
  Q8TB49 UniProtKB/Swiss-Prot
  Q9NUC4 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-05-01 CAPZB  capping actin protein of muscle Z-line subunit beta    capping actin protein of muscle Z-line beta subunit  Symbol and/or name change 5135510 APPROVED
2016-02-10 CAPZB  capping actin protein of muscle Z-line beta subunit    capping protein (actin filament) muscle Z-line, beta  Symbol and/or name change 5135510 APPROVED