GOLGA2 (golgin A2) - Rat Genome Database

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Gene: GOLGA2 (golgin A2) Homo sapiens
Analyze
Symbol: GOLGA2
Name: golgin A2
RGD ID: 1347402
HGNC Page HGNC
Description: Enables several functions, including identical protein binding activity; microtubule binding activity; and syntaxin binding activity. Involved in several processes, including Golgi ribbon formation; microtubule cytoskeleton organization; and positive regulation of protein glycosylation. Located in COPII-coated ER to Golgi transport vesicle; cis-Golgi network; and mitotic spindle. Part of Golgi cis cisterna.
Type: protein-coding
RefSeq Status: REVIEWED
Also known as: 130 kDa cis-Golgi matrix protein; GM130; GM130 autoantigen; golgi autoantigen, golgin subfamily a, 2; Golgi matrix protein GM130; Golgin subfamily A member 2; golgin-95; MGC20672; SY11 protein
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: GOLGA2P1   GOLGA2P10   GOLGA2P11   GOLGA2P2Y   GOLGA2P3Y   GOLGA2P4   GOLGA2P5   GOLGA2P7   GOLGA2P8   GOLGA2P9   LOC101929479   LOC390638   LOC727751  
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl9128,255,829 - 128,275,995 (-)EnsemblGRCh38hg38GRCh38
GRCh389128,255,829 - 128,276,007 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh379131,018,108 - 131,038,231 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 369130,057,929 - 130,078,089 (-)NCBINCBI36hg18NCBI36
Build 349128,097,662 - 128,117,822NCBI
Celera9101,669,012 - 101,689,172 (-)NCBI
Cytogenetic Map9q34.11NCBI
HuRef9100,631,562 - 100,651,722 (-)NCBIHuRef
CHM1_19131,169,131 - 131,189,291 (-)NCBICHM1_1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

Additional References at PubMed
PMID:8315394   PMID:8557739   PMID:9150144   PMID:9346242   PMID:9478999   PMID:9628863   PMID:9753325   PMID:10209123   PMID:10487747   PMID:10560974   PMID:10744704   PMID:10769027  
PMID:10931861   PMID:11035033   PMID:11285137   PMID:11306556   PMID:11591729   PMID:11696556   PMID:11703931   PMID:11718716   PMID:11739401   PMID:11739402   PMID:11781572   PMID:11855815  
PMID:11901144   PMID:12111718   PMID:12270925   PMID:12477932   PMID:12665801   PMID:12788069   PMID:14623284   PMID:15037601   PMID:15101818   PMID:15123239   PMID:15164053   PMID:15194699  
PMID:15229288   PMID:15489334   PMID:15796781   PMID:16097034   PMID:16169070   PMID:16189514   PMID:16489344   PMID:16964243   PMID:17036164   PMID:17314401   PMID:17488291   PMID:17724343  
PMID:18029348   PMID:18045989   PMID:18166528   PMID:18167358   PMID:18985028   PMID:19059912   PMID:19109421   PMID:19242490   PMID:20086247   PMID:20197635   PMID:20332113   PMID:20360068  
PMID:20421892   PMID:20605918   PMID:20936779   PMID:21078624   PMID:21182205   PMID:21516116   PMID:21525244   PMID:21567396   PMID:21757827   PMID:21873635   PMID:21900206   PMID:21911577  
PMID:21988832   PMID:22558309   PMID:22735382   PMID:22792062   PMID:22792322   PMID:22802641   PMID:23125841   PMID:23402259   PMID:23455922   PMID:23602568   PMID:23814182   PMID:24386440  
PMID:24510904   PMID:24648492   PMID:24705354   PMID:24722188   PMID:25416956   PMID:25468996   PMID:25496667   PMID:25787021   PMID:25852190   PMID:25892554   PMID:25910212   PMID:25921289  
PMID:26165940   PMID:26186194   PMID:26314804   PMID:26363069   PMID:26496610   PMID:26617790   PMID:26673895   PMID:26687599   PMID:26742501   PMID:26871637   PMID:27107012   PMID:27107014  
PMID:27229929   PMID:27684187   PMID:28276505   PMID:28380382   PMID:28447717   PMID:28514442   PMID:28515276   PMID:28782625   PMID:29128334   PMID:29395067   PMID:29507755   PMID:29509190  
PMID:29568061   PMID:29892012   PMID:30021884   PMID:30196744   PMID:30481304   PMID:30581152   PMID:30709970   PMID:30816200   PMID:30917363   PMID:30927204   PMID:30979931   PMID:31515488  
PMID:31519766   PMID:31586073   PMID:31833055   PMID:31995728   PMID:32129710   PMID:32296183   PMID:32331836   PMID:32353859   PMID:32814053   PMID:33060197   PMID:34079125  


Genomics

Comparative Map Data
GOLGA2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl9128,255,829 - 128,275,995 (-)EnsemblGRCh38hg38GRCh38
GRCh389128,255,829 - 128,276,007 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh379131,018,108 - 131,038,231 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 369130,057,929 - 130,078,089 (-)NCBINCBI36hg18NCBI36
Build 349128,097,662 - 128,117,822NCBI
Celera9101,669,012 - 101,689,172 (-)NCBI
Cytogenetic Map9q34.11NCBI
HuRef9100,631,562 - 100,651,722 (-)NCBIHuRef
CHM1_19131,169,131 - 131,189,291 (-)NCBICHM1_1
Golga2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39232,178,299 - 32,197,925 (+)NCBIGRCm39mm39
GRCm39 Ensembl232,177,396 - 32,197,933 (+)Ensembl
GRCm38232,288,287 - 32,307,913 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl232,287,384 - 32,307,921 (+)EnsemblGRCm38mm10GRCm38
MGSCv37232,143,773 - 32,163,441 (+)NCBIGRCm37mm9NCBIm37
MGSCv36232,109,393 - 32,129,930 (+)NCBImm8
Celera231,992,729 - 32,012,412 (+)NCBICelera
Cytogenetic Map2BNCBI
Golga2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2315,583,862 - 15,604,279 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl315,584,039 - 15,604,279 (+)Ensembl
Rnor_6.0311,317,328 - 11,337,569 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl311,317,183 - 11,336,458 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0316,666,198 - 16,686,439 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4311,412,088 - 11,434,260 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1311,308,459 - 11,330,632 (+)NCBI
Celera310,328,596 - 10,348,889 (+)NCBICelera
Cytogenetic Map3p12NCBI
Golga2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955570782,218 - 799,044 (-)NCBIChiLan1.0ChiLan1.0
GOLGA2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.19128,045,805 - 128,065,200 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9128,047,056 - 128,065,137 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0999,376,847 - 99,397,128 (-)NCBIMhudiblu_PPA_v0panPan3
GOLGA2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1955,234,836 - 55,251,698 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha954,429,688 - 54,446,610 (+)NCBI
ROS_Cfam_1.0956,156,848 - 56,173,782 (+)NCBI
UMICH_Zoey_3.1954,916,750 - 54,933,678 (+)NCBI
UNSW_CanFamBas_1.0955,231,389 - 55,248,316 (+)NCBI
UU_Cfam_GSD_1.0955,322,893 - 55,339,826 (+)NCBI
Golga2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947196,030,098 - 196,045,856 (-)NCBI
SpeTri2.0NW_00493648715,798,623 - 15,814,360 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GOLGA2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11268,702,823 - 268,721,174 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21302,693,900 - 302,710,489 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GOLGA2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1129,852,442 - 9,873,536 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl129,852,461 - 9,873,767 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660796,359,761 - 6,380,755 (-)NCBIVero_WHO_p1.0
Golga2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247606,588,351 - 6,605,518 (+)NCBIHetGla_female_1.0hetGla2

Position Markers
RH80222  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh379131,019,219 - 131,019,319UniSTSGRCh37
Build 369130,059,040 - 130,059,140RGDNCBI36
Celera9101,670,123 - 101,670,223RGD
Cytogenetic Map9q34.11UniSTS
HuRef9100,632,673 - 100,632,773UniSTS
GeneMap99-GB4 RH Map9392.76UniSTS
RH39755  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh379131,019,226 - 131,019,461UniSTSGRCh37
Build 369130,059,047 - 130,059,282RGDNCBI36
Celera9101,670,130 - 101,670,365RGD
Cytogenetic Map9q34.11UniSTS
HuRef9100,632,680 - 100,632,915UniSTS
G54069  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh379131,018,584 - 131,018,732UniSTSGRCh37
Build 369130,058,405 - 130,058,553RGDNCBI36
Celera9101,669,488 - 101,669,636RGD
Cytogenetic Map9q34.11UniSTS
Cytogenetic Map12q23.1UniSTS
HuRef9100,632,038 - 100,632,186UniSTS
HuRef1297,610,906 - 97,611,059UniSTS
RH69450  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map9q34.11UniSTS

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:3515
Count of miRNA genes:1050
Interacting mature miRNAs:1330
Transcripts:ENST00000421699, ENST00000450617, ENST00000458730, ENST00000461031, ENST00000462089, ENST00000468488, ENST00000470630, ENST00000486411, ENST00000490257, ENST00000490628, ENST00000496221, ENST00000609374
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High
Medium 2430 2575 1691 594 1616 435 4345 2086 3425 401 1446 1601 171 1204 2778 4 1
Low 9 415 35 30 335 30 11 111 309 18 14 12 4 1 10 2 1
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001366244 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001366246 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001389695 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001389696 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001389697 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001389698 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001389699 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001389700 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001389701 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001389702 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001389703 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001389704 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001389705 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_004486 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005251932 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF248953 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL590708 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AW583140 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY823636 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC006381 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC014188 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC069268 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BQ181201 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BT007248 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX647920 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471090 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CQ834570 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  L06147 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENST00000421699   ⟹   ENSP00000416097
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl9128,255,829 - 128,275,989 (-)Ensembl
RefSeq Acc Id: ENST00000450617   ⟹   ENSP00000409271
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl9128,261,172 - 128,275,995 (-)Ensembl
RefSeq Acc Id: ENST00000458730   ⟹   ENSP00000411598
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl9128,263,034 - 128,272,865 (-)Ensembl
RefSeq Acc Id: ENST00000461031
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl9128,260,666 - 128,261,223 (-)Ensembl
RefSeq Acc Id: ENST00000462089
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl9128,258,545 - 128,260,514 (-)Ensembl
RefSeq Acc Id: ENST00000468488
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl9128,261,685 - 128,265,937 (-)Ensembl
RefSeq Acc Id: ENST00000470630
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl9128,261,121 - 128,261,970 (-)Ensembl
RefSeq Acc Id: ENST00000486411
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl9128,260,126 - 128,260,991 (-)Ensembl
RefSeq Acc Id: ENST00000490257
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl9128,261,192 - 128,267,202 (-)Ensembl
RefSeq Acc Id: ENST00000490628   ⟹   ENSP00000473603
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl9128,273,640 - 128,275,987 (-)Ensembl
RefSeq Acc Id: ENST00000496221
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl9128,258,713 - 128,259,246 (-)Ensembl
RefSeq Acc Id: ENST00000610329   ⟹   ENSP00000481685
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl9128,255,832 - 128,275,938 (-)Ensembl
RefSeq Acc Id: ENST00000611957   ⟹   ENSP00000478799
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl9128,255,830 - 128,275,989 (-)Ensembl
RefSeq Acc Id: ENST00000639983   ⟹   ENSP00000491980
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl9128,257,087 - 128,260,560 (-)Ensembl
RefSeq Acc Id: NM_001366244   ⟹   NP_001353173
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh389128,255,829 - 128,276,007 (-)NCBI
RefSeq Acc Id: NM_001366246   ⟹   NP_001353175
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh389128,255,829 - 128,276,007 (-)NCBI
RefSeq Acc Id: NM_001389695   ⟹   NP_001376624
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh389128,255,829 - 128,276,007 (-)NCBI
RefSeq Acc Id: NM_001389696   ⟹   NP_001376625
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh389128,255,829 - 128,276,007 (-)NCBI
RefSeq Acc Id: NM_001389697   ⟹   NP_001376626
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh389128,255,829 - 128,276,007 (-)NCBI
RefSeq Acc Id: NM_001389698   ⟹   NP_001376627
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh389128,255,829 - 128,276,007 (-)NCBI
RefSeq Acc Id: NM_001389699   ⟹   NP_001376628
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh389128,255,829 - 128,276,007 (-)NCBI
RefSeq Acc Id: NM_001389700   ⟹   NP_001376629
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh389128,255,829 - 128,276,007 (-)NCBI
RefSeq Acc Id: NM_001389701   ⟹   NP_001376630
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh389128,255,829 - 128,276,007 (-)NCBI
RefSeq Acc Id: NM_001389702   ⟹   NP_001376631
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh389128,255,829 - 128,276,007 (-)NCBI
RefSeq Acc Id: NM_001389703   ⟹   NP_001376632
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh389128,255,829 - 128,276,007 (-)NCBI
RefSeq Acc Id: NM_001389704   ⟹   NP_001376633
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh389128,255,829 - 128,276,007 (-)NCBI
RefSeq Acc Id: NM_001389705   ⟹   NP_001376634
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh389128,255,829 - 128,276,007 (-)NCBI
RefSeq Acc Id: NM_004486   ⟹   NP_004477
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh389128,255,829 - 128,276,007 (-)NCBI
GRCh379131,018,108 - 131,038,286 (-)NCBI
Build 369130,057,929 - 130,078,089 (-)NCBI Archive
HuRef9100,631,562 - 100,651,722 (-)ENTREZGENE
CHM1_19131,169,131 - 131,189,291 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001353173 (Get FASTA)   NCBI Sequence Viewer  
  NP_001353175 (Get FASTA)   NCBI Sequence Viewer  
  NP_001376624 (Get FASTA)   NCBI Sequence Viewer  
  NP_001376625 (Get FASTA)   NCBI Sequence Viewer  
  NP_001376626 (Get FASTA)   NCBI Sequence Viewer  
  NP_001376627 (Get FASTA)   NCBI Sequence Viewer  
  NP_001376628 (Get FASTA)   NCBI Sequence Viewer  
  NP_001376629 (Get FASTA)   NCBI Sequence Viewer  
  NP_001376630 (Get FASTA)   NCBI Sequence Viewer  
  NP_001376631 (Get FASTA)   NCBI Sequence Viewer  
  NP_001376632 (Get FASTA)   NCBI Sequence Viewer  
  NP_001376633 (Get FASTA)   NCBI Sequence Viewer  
  NP_001376634 (Get FASTA)   NCBI Sequence Viewer  
  NP_004477 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA35920 (Get FASTA)   NCBI Sequence Viewer  
  AAF65550 (Get FASTA)   NCBI Sequence Viewer  
  AAH14188 (Get FASTA)   NCBI Sequence Viewer  
  AAH69268 (Get FASTA)   NCBI Sequence Viewer  
  AAP35912 (Get FASTA)   NCBI Sequence Viewer  
  AAV76025 (Get FASTA)   NCBI Sequence Viewer  
  CAH05500 (Get FASTA)   NCBI Sequence Viewer  
  CAI46071 (Get FASTA)   NCBI Sequence Viewer  
  EAW87762 (Get FASTA)   NCBI Sequence Viewer  
  EAW87763 (Get FASTA)   NCBI Sequence Viewer  
  EAW87764 (Get FASTA)   NCBI Sequence Viewer  
  EAW87765 (Get FASTA)   NCBI Sequence Viewer  
  Q08379 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_004477   ⟸   NM_004486
- Peptide Label: isoform 2
- Sequence:
RefSeq Acc Id: NP_001353175   ⟸   NM_001366246
- Peptide Label: isoform 3
RefSeq Acc Id: NP_001353173   ⟸   NM_001366244
- Peptide Label: isoform 1
RefSeq Acc Id: ENSP00000409271   ⟸   ENST00000450617
RefSeq Acc Id: ENSP00000473603   ⟸   ENST00000490628
RefSeq Acc Id: ENSP00000481685   ⟸   ENST00000610329
RefSeq Acc Id: ENSP00000491980   ⟸   ENST00000639983
RefSeq Acc Id: ENSP00000478799   ⟸   ENST00000611957
RefSeq Acc Id: ENSP00000411598   ⟸   ENST00000458730
RefSeq Acc Id: ENSP00000416097   ⟸   ENST00000421699
RefSeq Acc Id: NP_001376634   ⟸   NM_001389705
- Peptide Label: isoform 13
RefSeq Acc Id: NP_001376633   ⟸   NM_001389704
- Peptide Label: isoform 12
RefSeq Acc Id: NP_001376631   ⟸   NM_001389702
- Peptide Label: isoform 10
RefSeq Acc Id: NP_001376632   ⟸   NM_001389703
- Peptide Label: isoform 11
RefSeq Acc Id: NP_001376630   ⟸   NM_001389701
- Peptide Label: isoform 9
RefSeq Acc Id: NP_001376629   ⟸   NM_001389700
- Peptide Label: isoform 8
RefSeq Acc Id: NP_001376628   ⟸   NM_001389699
- Peptide Label: isoform 7
RefSeq Acc Id: NP_001376626   ⟸   NM_001389697
- Peptide Label: isoform 5
RefSeq Acc Id: NP_001376627   ⟸   NM_001389698
- Peptide Label: isoform 6
RefSeq Acc Id: NP_001376624   ⟸   NM_001389695
- Peptide Label: isoform 3
RefSeq Acc Id: NP_001376625   ⟸   NM_001389696
- Peptide Label: isoform 4

Promoters
RGD ID:7216269
Promoter ID:EPDNEW_H13876
Type:initiation region
Name:GOLGA2_1
Description:golgin A2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh389128,275,952 - 128,276,012EPDNEW
RGD ID:6807747
Promoter ID:HG_KWN:65120
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:K562
Transcripts:OTTHUMT00000054355,   OTTHUMT00000054356,   OTTHUMT00000054365,   OTTHUMT00000054366,   UC004BUH.1
Position:
Human AssemblyChrPosition (strand)Source
Build 369130,061,966 - 130,062,466 (-)MPROMDB
RGD ID:6807749
Promoter ID:HG_KWN:65124
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:K562
Transcripts:OTTHUMT00000054364,   OTTHUMT00000342645
Position:
Human AssemblyChrPosition (strand)Source
Build 369130,069,216 - 130,069,716 (-)MPROMDB
RGD ID:6807748
Promoter ID:HG_KWN:65125
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:K562,   Lymphoblastoid
Transcripts:UC004BUM.1
Position:
Human AssemblyChrPosition (strand)Source
Build 369130,070,339 - 130,070,839 (-)MPROMDB
RGD ID:6807300
Promoter ID:HG_KWN:65128
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   HeLa_S3,   Jurkat,   K562,   Lymphoblastoid,   NB4
Transcripts:NM_004486,   OTTHUMT00000054336,   OTTHUMT00000054337,   OTTHUMT00000054360,   OTTHUMT00000054362,   UC010MXW.1,   UC010MXX.1
Position:
Human AssemblyChrPosition (strand)Source
Build 369130,077,766 - 130,078,487 (+)MPROMDB

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 9p24.3-q34.3(chr9:193412-138179445)x3 copy number gain See cases [RCV000050348] Chr9:193412..138179445 [GRCh38]
Chr9:204193..141073897 [GRCh37]
Chr9:194193..140193718 [NCBI36]
Chr9:9p24.3-q34.3
pathogenic
GRCh38/hg38 9q33.2-34.3(chr9:122792658-138124532)x3 copy number gain See cases [RCV000051040] Chr9:122792658..138124532 [GRCh38]
Chr9:125554937..141018984 [GRCh37]
Chr9:124594758..140138805 [NCBI36]
Chr9:9q33.2-34.3
pathogenic
GRCh38/hg38 9q33.2-34.3(chr9:121112395-138075224)x3 copy number gain See cases [RCV000051009] Chr9:121112395..138075224 [GRCh38]
Chr9:123874673..140969676 [GRCh37]
Chr9:122914494..140089497 [NCBI36]
Chr9:9q33.2-34.3
pathogenic
GRCh38/hg38 9q33.3-34.11(chr9:125993583-129682375)x1 copy number loss See cases [RCV000052923] Chr9:125993583..129682375 [GRCh38]
Chr9:128755862..132444654 [GRCh37]
Chr9:127795683..131484475 [NCBI36]
Chr9:9q33.3-34.11
pathogenic
GRCh38/hg38 9q34.11(chr9:127874581-130421811)x1 copy number loss See cases [RCV000052934] Chr9:127874581..130421811 [GRCh38]
Chr9:130636860..133297198 [GRCh37]
Chr9:129676681..132287019 [NCBI36]
Chr9:9q34.11
pathogenic
GRCh38/hg38 9p24.3-q34.3(chr9:193412-138124532)x3 copy number gain See cases [RCV000053745] Chr9:193412..138124532 [GRCh38]
Chr9:204193..141018984 [GRCh37]
Chr9:194193..140138805 [NCBI36]
Chr9:9p24.3-q34.3
pathogenic
GRCh38/hg38 9p24.3-q34.3(chr9:193412-138179445)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053748]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053748]|See cases [RCV000053748] Chr9:193412..138179445 [GRCh38]
Chr9:266045..141073897 [GRCh37]
Chr9:256045..140193718 [NCBI36]
Chr9:9p24.3-q34.3
pathogenic
GRCh38/hg38 9p24.3-q34.3(chr9:193412-138114463)x3 copy number gain See cases [RCV000053746] Chr9:193412..138114463 [GRCh38]
Chr9:214367..141008915 [GRCh37]
Chr9:204367..140128736 [NCBI36]
Chr9:9p24.3-q34.3
pathogenic
GRCh38/hg38 9q33.2-34.3(chr9:121586837-138179445)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053776]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053776]|See cases [RCV000053776] Chr9:121586837..138179445 [GRCh38]
Chr9:124349116..141073897 [GRCh37]
Chr9:123388937..140193718 [NCBI36]
Chr9:9q33.2-34.3
pathogenic
GRCh38/hg38 9q34.11(chr9:127919476-130079974)x3 copy number gain See cases [RCV000053777] Chr9:127919476..130079974 [GRCh38]
Chr9:130681755..132842253 [GRCh37]
Chr9:129721576..131882074 [NCBI36]
Chr9:9q34.11
pathogenic
NM_004486.4(GOLGA2):c.666C>T (p.Thr222=) single nucleotide variant Malignant melanoma [RCV000068551] Chr9:128265867 [GRCh38]
Chr9:131028146 [GRCh37]
Chr9:130067967 [NCBI36]
Chr9:9q34.11
not provided
GRCh38/hg38 9p24.3-q34.3(chr9:204193-138179445) copy number gain See cases [RCV000133791] Chr9:204193..138179445 [GRCh38]
Chr9:204193..141073897 [GRCh37]
Chr9:194193..140193718 [NCBI36]
Chr9:9p24.3-q34.3
pathogenic
GRCh38/hg38 9q33.2-34.3(chr9:121073102-138179445)x3 copy number gain See cases [RCV000134920] Chr9:121073102..138179445 [GRCh38]
Chr9:123835380..141073897 [GRCh37]
Chr9:122875201..140193718 [NCBI36]
Chr9:9q33.2-34.3
pathogenic
GRCh38/hg38 9q33.3-34.11(chr9:125055865-128637946)x1 copy number loss See cases [RCV000137787] Chr9:125055865..128637946 [GRCh38]
Chr9:127818144..131400225 [GRCh37]
Chr9:126857965..130440046 [NCBI36]
Chr9:9q33.3-34.11
pathogenic
GRCh38/hg38 9p24.3-q34.3(chr9:193412-138124524)x3 copy number gain See cases [RCV000138783] Chr9:193412..138124524 [GRCh38]
Chr9:204090..141018976 [GRCh37]
Chr9:194090..140138797 [NCBI36]
Chr9:9p24.3-q34.3
pathogenic
GRCh38/hg38 9q34.11(chr9:128236347-128912067)x1 copy number loss See cases [RCV000138929] Chr9:128236347..128912067 [GRCh38]
Chr9:130998626..131674346 [GRCh37]
Chr9:130038447..130714167 [NCBI36]
Chr9:9q34.11
pathogenic
GRCh38/hg38 9p11.2-q34.3(chr9:193412-138159073)x3 copy number gain See cases [RCV000139207] Chr9:193412..138159073 [GRCh38]
Chr9:68420641..141053525 [GRCh37]
Chr9:67910461..140173346 [NCBI36]
Chr9:9p11.2-q34.3
pathogenic
GRCh38/hg38 9p24.3-q34.3(chr9:193412-138159073)x3 copy number gain See cases [RCV000138962] Chr9:193412..138159073 [GRCh38]
Chr9:204104..141053525 [GRCh37]
Chr9:194104..140173346 [NCBI36]
Chr9:9p24.3-q34.3
pathogenic|conflicting data from submitters
GRCh38/hg38 9p24.3-q34.3(chr9:203861-138125937)x3 copy number gain See cases [RCV000141876] Chr9:203861..138125937 [GRCh38]
Chr9:203861..141020389 [GRCh37]
Chr9:193861..140140210 [NCBI36]
Chr9:9p24.3-q34.3
pathogenic
GRCh38/hg38 9p24.3-q34.3(chr9:203862-138125937)x3 copy number gain See cases [RCV000143476] Chr9:203862..138125937 [GRCh38]
Chr9:203862..141020389 [GRCh37]
Chr9:193862..140140210 [NCBI36]
Chr9:9p24.3-q34.3
pathogenic
GRCh38/hg38 9p24.3-q34.3(chr9:193412-138179445)x3 copy number gain See cases [RCV000148113] Chr9:193412..138179445 [GRCh38]
Chr9:204193..141073897 [GRCh37]
Chr9:194193..140193718 [NCBI36]
Chr9:9p24.3-q34.3
pathogenic
GRCh37/hg19 9p24.3-q34.3(chr9:163131-141122114)x3 copy number gain See cases [RCV000240081] Chr9:163131..141122114 [GRCh37]
Chr9:9p24.3-q34.3
pathogenic
GRCh37/hg19 9p24.3-q34.3(chr9:62525-141006407) copy number gain See cases [RCV000449375] Chr9:62525..141006407 [GRCh37]
Chr9:9p24.3-q34.3
pathogenic
GRCh37/hg19 9p24.3-q34.3(chr9:203861-141020389)x3 copy number gain See cases [RCV000447207] Chr9:203861..141020389 [GRCh37]
Chr9:9p24.3-q34.3
pathogenic
GRCh37/hg19 9q33.3-34.3(chr9:128652785-141044751)x3 copy number gain See cases [RCV000447080] Chr9:128652785..141044751 [GRCh37]
Chr9:9q33.3-34.3
pathogenic
GRCh37/hg19 9q34.11(chr9:130390139-132760275)x1 copy number loss See cases [RCV000445837] Chr9:130390139..132760275 [GRCh37]
Chr9:9q34.11
pathogenic
GRCh37/hg19 9p24.3-q34.3(chr9:203864-141020389)x3 copy number gain See cases [RCV000448978] Chr9:203864..141020389 [GRCh37]
Chr9:9p24.3-q34.3
pathogenic
GRCh37/hg19 9q33.2-34.3(chr9:124642754-141146461)x3 copy number gain See cases [RCV000448784] Chr9:124642754..141146461 [GRCh37]
Chr9:9q33.2-34.3
pathogenic
GRCh37/hg19 9q21.11-34.3(chr9:71069743-140999928) copy number gain Global developmental delay [RCV000626548] Chr9:71069743..140999928 [GRCh37]
Chr9:9q21.11-34.3
likely pathogenic
GRCh37/hg19 9p24.3-q34.3(chr9:203862-141020389) copy number gain See cases [RCV000512392] Chr9:203862..141020389 [GRCh37]
Chr9:9p24.3-q34.3
pathogenic
NC_000009.11:g.(?_130911805)_(131302617_?)dup duplication Coenzyme Q10 deficiency, primary, 7 [RCV000708297] Chr9:128149526..128540338 [GRCh38]
Chr9:130911805..131302617 [GRCh37]
Chr9:9q34.11
uncertain significance
GRCh37/hg19 9p24.3-q34.3(chr9:10590-141122247)x3 copy number gain not provided [RCV000748055] Chr9:10590..141122247 [GRCh37]
Chr9:9p24.3-q34.3
pathogenic
GRCh37/hg19 9q33.3-34.12(chr9:129370440-133866894)x1 copy number loss not provided [RCV000748671] Chr9:129370440..133866894 [GRCh37]
Chr9:9q33.3-34.12
pathogenic
GRCh37/hg19 9q33.3-34.11(chr9:129522693-131410039)x1 copy number loss not provided [RCV000748677] Chr9:129522693..131410039 [GRCh37]
Chr9:9q33.3-34.11
benign
GRCh37/hg19 9p24.3-q34.3(chr9:10590-141107672)x3 copy number gain not provided [RCV000748053] Chr9:10590..141107672 [GRCh37]
Chr9:9p24.3-q34.3
pathogenic
GRCh37/hg19 9p24.3-q34.3(chr9:46587-141066491)x3 copy number gain not provided [RCV000748063] Chr9:46587..141066491 [GRCh37]
Chr9:9p24.3-q34.3
pathogenic
GRCh37/hg19 9p24.3-q34.3(chr9:10590-141114095)x2 copy number gain not provided [RCV000748054] Chr9:10590..141114095 [GRCh37]
Chr9:9p24.3-q34.3
pathogenic
NM_004486.5(GOLGA2):c.1609C>G (p.Leu537Val) single nucleotide variant not provided [RCV000880845] Chr9:128260497 [GRCh38]
Chr9:131022776 [GRCh37]
Chr9:9q34.11
benign
NM_004486.5(GOLGA2):c.1494G>A (p.Ala498=) single nucleotide variant not provided [RCV000970403] Chr9:128260612 [GRCh38]
Chr9:131022891 [GRCh37]
Chr9:9q34.11
likely benign
GRCh37/hg19 9p24.3-q34.3(chr9:203861-141020388)x3 copy number gain not provided [RCV000845900] Chr9:203861..141020388 [GRCh37]
Chr9:9p24.3-q34.3
pathogenic
NC_000009.12:g.(?_127612384)_(128566997_?)del deletion Coenzyme Q10 deficiency, primary, 7 [RCV001387712]|Early infantile epileptic encephalopathy with suppression bursts [RCV000819894] Chr9:127612384..128566997 [GRCh38]
Chr9:130374663..131329276 [GRCh37]
Chr9:9q34.11
pathogenic|uncertain significance
GRCh37/hg19 9q21.11-34.3(chr9:71416475-141020389)x3 copy number gain not provided [RCV000847808] Chr9:71416475..141020389 [GRCh37]
Chr9:9q21.11-34.3
pathogenic
GRCh37/hg19 9q34.11(chr9:130957344-132310210)x1 copy number loss not provided [RCV001006274] Chr9:130957344..132310210 [GRCh37]
Chr9:9q34.11
pathogenic
NM_004486.5(GOLGA2):c.2744C>T (p.Ala915Val) single nucleotide variant not provided [RCV000999225] Chr9:128257383 [GRCh38]
Chr9:131019662 [GRCh37]
Chr9:9q34.11
uncertain significance
null microsatellite not provided [RCV001674650] Chr9:128258517..128258519 [GRCh38]
Chr9:131020796..131020798 [GRCh37]
Chr9:9q34.11
benign
NM_004486.5(GOLGA2):c.2228G>A (p.Arg743His) single nucleotide variant not provided [RCV000954125] Chr9:128258143 [GRCh38]
Chr9:131020422 [GRCh37]
Chr9:9q34.11
benign
NC_000009.12:g.(?_127815672)_(128541180_?)del deletion not provided [RCV001032461] Chr9:130577951..131303459 [GRCh37]
Chr9:9q34.11
pathogenic
GRCh37/hg19 9q34.11(chr9:130412438-131423964)x1 copy number loss Infantile epilepsy syndrome [RCV001265154] Chr9:130412438..131423964 [GRCh37]
Chr9:9q34.11
pathogenic
null single nucleotide variant not provided [RCV001641882] Chr9:128265703 [GRCh38]
Chr9:131027982 [GRCh37]
Chr9:9q34.11
benign
NC_000009.11:g.(?_130374663)_(131329276_?)del deletion Early infantile epileptic encephalopathy with suppression bursts [RCV001304269] Chr9:130374663..131329276 [GRCh37]
Chr9:9q34.11
uncertain significance

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:4425 AgrOrtholog
COSMIC GOLGA2 COSMIC
Ensembl Genes ENSG00000167110 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSP00000409271 UniProtKB/TrEMBL
  ENSP00000411598 UniProtKB/TrEMBL
  ENSP00000416097 UniProtKB/TrEMBL
  ENSP00000473603 UniProtKB/TrEMBL
  ENSP00000478799 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSP00000481685 UniProtKB/TrEMBL
  ENSP00000491980 UniProtKB/TrEMBL
Ensembl Transcript ENST00000421699 UniProtKB/TrEMBL
  ENST00000450617 UniProtKB/TrEMBL
  ENST00000458730 UniProtKB/TrEMBL
  ENST00000490628 UniProtKB/TrEMBL
  ENST00000610329 UniProtKB/TrEMBL
  ENST00000611957 ENTREZGENE, UniProtKB/Swiss-Prot
  ENST00000639983 UniProtKB/TrEMBL
GTEx ENSG00000167110 GTEx
HGNC ID HGNC:4425 ENTREZGENE
Human Proteome Map GOLGA2 Human Proteome Map
InterPro GM130_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GOLGA_cons_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Golgin_A UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:2801 UniProtKB/Swiss-Prot
NCBI Gene 2801 ENTREZGENE
OMIM 602580 OMIM
PANTHER PTHR10881 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam GM130_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GOLGA2L5 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB GOLGA2 RGD, PharmGKB
UniProt A0A087WYC0_HUMAN UniProtKB/TrEMBL
  A0A1W2PQY5_HUMAN UniProtKB/TrEMBL
  A0A6Q8KRG2_HUMAN UniProtKB/TrEMBL
  B7ZC06_HUMAN UniProtKB/TrEMBL
  GOGA2_HUMAN UniProtKB/Swiss-Prot
  H0Y7B8_HUMAN UniProtKB/TrEMBL
  Q08379 ENTREZGENE
  Q5PXD5_HUMAN UniProtKB/TrEMBL
  R4GND7_HUMAN UniProtKB/TrEMBL
UniProt Secondary A0A0C4DGS5 UniProtKB/Swiss-Prot
  Q6GRM9 UniProtKB/Swiss-Prot
  Q9BRB0 UniProtKB/Swiss-Prot
  Q9NYF9 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-08-16 GOLGA2  golgin A2  GOLGA2  golgin A2  Symbol and/or name change 5135510 APPROVED
2011-07-27 GOLGA2  golgin A2  GOLGA2  golgi autoantigen, golgin subfamily a, 2  Symbol and/or name change 5135510 APPROVED