BLCAP (BLCAP apoptosis inducing factor)

Gene: BLCAP (BLCAP apoptosis inducing factor) Homo sapiens

Analyze

Symbol:

BLCAP

Name:

BLCAP apoptosis inducing factor

RGD ID:

1347383

HGNC Page

HGNC:1055

Description:

Involved in apoptotic nuclear changes. Predicted to be located in membrane.

Type:

protein-coding

RefSeq Status:

REVIEWED

Previously known as:

BC10; bladder cancer 10 kDa protein; bladder cancer related protein (10kD); bladder cancer-associated protein; BLCAP, apoptosis inducing factor

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Mus musculus (house mouse):	Blcap (bladder cancer associated protein)	HGNC	EggNOG, Ensembl, HGNC, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Rattus norvegicus (Norway rat):	Blcap (BLCAP, apoptosis inducing factor)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Chinchilla lanigera (long-tailed chinchilla):	Blcap (BLCAP apoptosis inducing factor)	NCBI	Ortholog
Pan paniscus (bonobo/pygmy chimpanzee):	BLCAP (BLCAP apoptosis inducing factor)	NCBI	Ortholog
Canis lupus familiaris (dog):	BLCAP (BLCAP apoptosis inducing factor)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, Treefam
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Blcap (BLCAP apoptosis inducing factor)	NCBI	Ortholog
Sus scrofa (pig):	BLCAP (BLCAP apoptosis inducing factor)	HGNC	NCBI
Chlorocebus sabaeus (green monkey):	BLCAP (BLCAP apoptosis inducing factor)	NCBI	Ortholog
Heterocephalus glaber (naked mole-rat):	Blcap (BLCAP apoptosis inducing factor)	NCBI	Ortholog
Alliance orthologs ³
Rattus norvegicus (Norway rat):	Blcap (BLCAP, apoptosis inducing factor)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Blcap (bladder cancer associated protein)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	blcap (bladder cancer associated protein)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	Y73E7A.6	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	bc10	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	blcap	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus laevis (African clawed frog):	blcap.S	Alliance	DIOPT (Xenbase)
Xenopus laevis (African clawed frog):	blcap.L	Alliance	DIOPT (Xenbase)

Allele / Splice:

See ClinVar data

Latest Assembly:

GRCh38 - Human Genome Assembly GRCh38

Position:

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	20	37,517,417 - 37,527,876 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	20	37,492,472 - 37,527,931 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	20	36,145,819 - 36,156,278 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	20	35,579,233 - 35,589,717 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	20	35,579,233 - 35,589,717	NCBI
Celera	20	32,853,082 - 32,863,596 (-)	NCBI		Celera
Cytogenetic Map	20	q11.23	NCBI
HuRef	20	32,881,537 - 32,892,054 (-)	NCBI		HuRef
CHM1_1	20	36,048,633 - 36,059,135 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	20	39,241,512 - 39,251,972 (-)	NCBI		T2T-CHM13v2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Aicardi-Goutieres Syndrome 5 (IAGP)

focal epilepsy (IAGP)

genetic disease (IAGP)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (ISO)

17beta-hydroxy-17-methylestra-4,9,11-trien-3-one (EXP)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2,4-dinitrotoluene (ISO)

3,4-methylenedioxymethamphetamine (ISO)

4,4'-diaminodiphenylmethane (ISO)

4,4'-sulfonyldiphenol (ISO)

5-aza-2'-deoxycytidine (EXP)

aflatoxin B1 (EXP)

all-trans-retinoic acid (EXP)

ammonium chloride (ISO)

aristolochic acid A (EXP)

arsane (EXP)

arsenic atom (EXP)

azoxystrobin (EXP)

benzene (ISO)

benzo[a]pyrene (EXP,ISO)

bisphenol A (ISO)

bisphenol F (ISO)

chlorpyrifos (ISO)

cisplatin (EXP)

cyclosporin A (EXP)

dorsomorphin (EXP)

doxorubicin (EXP)

endosulfan (ISO)

epoxiconazole (ISO)

ethanol (ISO)

ethyl methanesulfonate (EXP)

flavonoids (ISO)

formaldehyde (EXP)

gentamycin (ISO)

leflunomide (EXP)

methyl methanesulfonate (EXP)

methylmercury chloride (EXP)

ochratoxin A (EXP)

paracetamol (ISO)

parathion (ISO)

phenobarbital (EXP)

phenol (EXP)

resorcinol (EXP)

resveratrol (EXP)

rotenone (EXP)

SB 431542 (EXP)

sodium arsenite (EXP)

temozolomide (EXP)

tetrachloromethane (ISO)

thioacetamide (ISO)

trichloroethene (ISO)

trichostatin A (EXP)

triclosan (EXP)

triptonide (ISO)

valproic acid (ISO)

vinclozolin (ISO)

vorinostat (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

apoptotic nuclear changes (IDA)

apoptotic process (IEA)

Cellular Component

membrane (IEA)

Molecular Function

protein binding (IPI)

Phenotype Annotations Click to see Annotation Detail View

Human Phenotype

Focal-onset seizure (IAGP)

References

References - curated

#	Reference Title	Reference Citation
1.	Identification of true differentially expressed mRNAs in a pair of human bladder transitional cell carcinomas using an improved differential display procedure.	Gromova I, etal., Electrophoresis 1999 Feb;20(2):241-8.
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:11780052	PMID:11920613	PMID:12136878	PMID:12477932	PMID:14702039	PMID:15342556	PMID:15489334	PMID:15731336	PMID:15797904	PMID:16303743	PMID:16344560	PMID:16675915
PMID:16712791	PMID:17031575	PMID:18836209	PMID:19322201	PMID:19783793	PMID:19908260	PMID:21217774	PMID:21844121	PMID:23049907	PMID:25416956	PMID:25499081	PMID:26186239
PMID:26760575	PMID:26986503	PMID:27938505	PMID:28455960	PMID:29117863	PMID:29190807	PMID:30683807	PMID:31515488	PMID:32296183	PMID:32513696	PMID:36724073

Genomics

Comparative Map Data

BLCAP
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	20	37,517,417 - 37,527,876 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	20	37,492,472 - 37,527,931 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	20	36,145,819 - 36,156,278 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	20	35,579,233 - 35,589,717 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	20	35,579,233 - 35,589,717	NCBI
Celera	20	32,853,082 - 32,863,596 (-)	NCBI		Celera
Cytogenetic Map	20	q11.23	NCBI
HuRef	20	32,881,537 - 32,892,054 (-)	NCBI		HuRef
CHM1_1	20	36,048,633 - 36,059,135 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	20	39,241,512 - 39,251,972 (-)	NCBI		T2T-CHM13v2.0

Blcap
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	157,398,282 - 157,408,281 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	157,398,282 - 157,413,194 (-)	Ensembl		GRCm39 Ensembl
GRCm38	2	157,556,362 - 157,566,361 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	157,556,362 - 157,571,274 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	157,382,098 - 157,392,097 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	157,247,803 - 157,257,802 (-)	NCBI		MGSCv36	mm8
Celera	2	163,500,408 - 163,510,408 (-)	NCBI		Celera
Cytogenetic Map	2	H1	NCBI
cM Map	2	78.4	NCBI

Blcap
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	166,642,676 - 166,656,924 (-)	NCBI		GRCr8
mRatBN7.2	3	146,222,699 - 146,232,859 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	146,222,240 - 146,232,909 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	150,048,036 - 150,058,196 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	158,549,229 - 158,559,337 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	156,291,149 - 156,301,311 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	154,040,165 - 154,042,096 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	154,040,166 - 154,042,099 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	161,557,596 - 161,559,527 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	148,265,615 - 148,275,959 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	3	148,171,523 - 148,173,328 (-)	NCBI
Celera	3	144,926,667 - 144,928,598 (-)	NCBI		Celera
Cytogenetic Map	3	q42	NCBI

Blcap
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955445	19,117,226 - 19,127,469 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955445	19,116,945 - 19,127,469 (+)	NCBI	ChiLan1.0	ChiLan1.0

BLCAP
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	21	43,244,895 - 43,255,406 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	20	43,237,993 - 43,248,504 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	20	33,839,246 - 33,849,833 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	20	34,953,172 - 34,963,734 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	20	34,954,666 - 34,954,929 (-)	Ensembl	panpan1.1		panPan2

BLCAP
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	24	26,115,356 - 26,125,963 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	24	26,116,887 - 26,117,150 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	24	25,761,043 - 25,771,930 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	24	26,812,013 - 26,822,916 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	24	26,812,013 - 26,822,600 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	24	26,087,145 - 26,097,929 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	24	26,194,697 - 26,205,316 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	24	26,682,252 - 26,692,880 (-)	NCBI		UU_Cfam_GSD_1.0

Blcap
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	175,003,456 - 175,017,123 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936561	3,732,134 - 3,746,028 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936561	3,735,449 - 3,746,028 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

BLCAP
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	17	40,624,844 - 40,625,107 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	17	40,603,977 - 40,633,613 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	17	46,025,954 - 46,050,016 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

BLCAP
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	2	26,225,572 - 26,236,065 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	2	26,234,308 - 26,234,568 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666050	75,098,090 - 75,108,591 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Blcap
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624842	2,118,955 - 2,129,291 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624842	2,118,996 - 2,127,981 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in BLCAP
3 total Variants

Clinical Variants

Name	Type	Condition(s)	Position(s)	Clinical significance
GRCh38/hg38 20q11.22-12(chr20:34541747-39663219)x1	copy number loss	Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052766]\|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052766]\|See cases [RCV000052766]	Chr20:34541747..39663219 [GRCh38] Chr20:33129551..38291861 [GRCh37] Chr20:32593212..37725275 [NCBI36] Chr20:20q11.22-12	pathogenic
GRCh38/hg38 20q11.22-13.11(chr20:34249453-43359749)x3	copy number gain	Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053002]\|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053002]\|See cases [RCV000053002]	Chr20:34249453..43359749 [GRCh38] Chr20:32837259..41988389 [GRCh37] Chr20:32300920..41421803 [NCBI36] Chr20:20q11.22-13.11	pathogenic
GRCh38/hg38 20p12.2-q12(chr20:9811433-39316956)x3	copy number gain	See cases [RCV000052999]	Chr20:9811433..39316956 [GRCh38] Chr20:9792081..37945599 [GRCh37] Chr20:9740081..37379013 [NCBI36] Chr20:20p12.2-q12	pathogenic
GRCh38/hg38 20p13-q13.33(chr20:99557-64277321)x3	copy number gain	See cases [RCV000135859]	Chr20:99557..64277321 [GRCh38] Chr20:80198..62908674 [GRCh37] Chr20:28198..62379118 [NCBI36] Chr20:20p13-q13.33	pathogenic
GRCh38/hg38 20q11.22-13.12(chr20:35237946-47631818)x1	copy number loss	See cases [RCV000140816]	Chr20:35237946..47631818 [GRCh38] Chr20:33825749..46260562 [GRCh37] Chr20:33289165..45693969 [NCBI36] Chr20:20q11.22-13.12	pathogenic
GRCh37/hg19 20p13-q13.33(chr20:61569-62915555)x3	copy number gain	See cases [RCV000510832]	Chr20:61569..62915555 [GRCh37] Chr20:20p13-q13.33	pathogenic
GRCh37/hg19 20p13-q13.33(chr20:61569-62915555)	copy number gain	See cases [RCV000512450]	Chr20:61569..62915555 [GRCh37] Chr20:20p13-q13.33	pathogenic
GRCh37/hg19 20p13-q13.33(chr20:63244-62961294)x3	copy number gain	not provided [RCV000741059]	Chr20:63244..62961294 [GRCh37] Chr20:20p13-q13.33	pathogenic
GRCh37/hg19 20p13-q13.33(chr20:63244-62912463)x3	copy number gain	not provided [RCV000741057]	Chr20:63244..62912463 [GRCh37] Chr20:20p13-q13.33	pathogenic
GRCh37/hg19 20p13-q13.33(chr20:63244-62948788)x3	copy number gain	not provided [RCV000741058]	Chr20:63244..62948788 [GRCh37] Chr20:20p13-q13.33	pathogenic
Single allele	deletion	Focal-onset seizure [RCV001004039]	Chr20:34980430..46806549 [GRCh37] Chr20:20q11.23-13.13	likely pathogenic
NC_000020.10:g.(?_35569422)_(36500415_?)dup	duplication	Aicardi-Goutieres syndrome 5 [RCV003119602]	Chr20:35569422..36500415 [GRCh37] Chr20:20q11.23	uncertain significance
NM_006698.4(BLCAP):c.220C>T (p.Pro74Ser)	single nucleotide variant	Inborn genetic diseases [RCV003295559]	Chr20:37518955 [GRCh38] Chr20:36147357 [GRCh37] Chr20:20q11.23	uncertain significance
NM_006698.4(BLCAP):c.115G>C (p.Glu39Gln)	single nucleotide variant	Inborn genetic diseases [RCV002766980]	Chr20:37519060 [GRCh38] Chr20:36147462 [GRCh37] Chr20:20q11.23	uncertain significance
NM_005386.4(NNAT):c.54C>G (p.Ile18Met)	single nucleotide variant	Inborn genetic diseases [RCV002941535]	Chr20:37521385 [GRCh38] Chr20:36149787 [GRCh37] Chr20:20q11.23	uncertain significance
GRCh37/hg19 20q11.23(chr20:36112920-36787057)x1	copy number loss	not provided [RCV003483362]	Chr20:36112920..36787057 [GRCh37] Chr20:20q11.23	uncertain significance

miRNA Target Status

Confirmed Target Of

miRNA Gene	Mature miRNA	Method Name	Result Type	Data Type	Support Type	PMID
MIR138-2	hsa-miR-138-5p	Mirtarbase	external_info	Luciferase reporter assay//Microarray	Functional MTI	22921398
MIR138-1	hsa-miR-138-5p	Mirtarbase	external_info	Luciferase reporter assay//Microarray	Functional MTI	22921398

Predicted Target Of

	Summary Value
Count of predictions:	5358
Count of miRNA genes:	947
Interacting mature miRNAs:	1147
Transcripts:	ENST00000373537, ENST00000397131, ENST00000397134, ENST00000397135, ENST00000397137, ENST00000414080, ENST00000414542, ENST00000432507, ENST00000445723, ENST00000456058, ENST00000467603
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region

D20S530E

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	20	36,145,888 - 36,145,957	UniSTS	GRCh37
GRCh37	13	20,332,019 - 20,332,088	UniSTS	GRCh37
Build 36	13	19,230,019 - 19,230,088	RGD	NCBI36
Celera	20	32,853,151 - 32,853,220	UniSTS
Celera	13	1,393,857 - 1,393,926	RGD
Cytogenetic Map	20	q11.23	UniSTS
Cytogenetic Map	13	q12.11	UniSTS
HuRef	20	32,881,606 - 32,881,675	UniSTS
HuRef	13	1,136,982 - 1,137,051	UniSTS
GeneMap99-GB4 RH Map	20	209.67	UniSTS
NCBI RH Map	20	309.9	UniSTS

RH79915

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	20	36,151,185 - 36,151,435	UniSTS	GRCh37
Build 36	20	35,584,599 - 35,584,849	RGD	NCBI36
Celera	20	32,858,448 - 32,858,698	RGD
Cytogenetic Map	20	q11.23	UniSTS
Cytogenetic Map	20	q11.2-q12	UniSTS
HuRef	20	32,886,905 - 32,887,155	UniSTS

D20S769

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	20	36,146,104 - 36,146,262	UniSTS	GRCh37
Build 36	20	35,579,518 - 35,579,676	RGD	NCBI36
Celera	20	32,853,367 - 32,853,525	RGD
Cytogenetic Map	20	q11.23	UniSTS
HuRef	20	32,881,822 - 32,881,980	UniSTS

G19955

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	20	36,145,870 - 36,146,093	UniSTS	GRCh37
Build 36	20	35,579,284 - 35,579,507	RGD	NCBI36
Celera	20	32,853,133 - 32,853,356	RGD
Cytogenetic Map	20	q11.23	UniSTS
HuRef	20	32,881,588 - 32,881,811	UniSTS

A002D19

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	20	36,145,870 - 36,146,093	UniSTS	GRCh37
Build 36	20	35,579,284 - 35,579,507	RGD	NCBI36
Celera	20	32,853,133 - 32,853,356	RGD
Cytogenetic Map	20	q11.23	UniSTS
HuRef	20	32,881,588 - 32,881,811	UniSTS
GeneMap99-GB4 RH Map	20	210.86	UniSTS
NCBI RH Map	20	310.1	UniSTS

NNAT_8167

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	20	36,151,331 - 36,152,139	UniSTS	GRCh37
Build 36	20	35,584,745 - 35,585,553	RGD	NCBI36
Celera	20	32,858,594 - 32,859,402	RGD
HuRef	20	32,887,051 - 32,887,859	UniSTS

WI-19586

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	20	36,145,918 - 36,146,173	UniSTS	GRCh37
Build 36	20	35,579,332 - 35,579,587	RGD	NCBI36
Celera	20	32,853,181 - 32,853,436	RGD
Cytogenetic Map	20	q11.23	UniSTS
HuRef	20	32,881,636 - 32,881,891	UniSTS
GeneMap99-GB4 RH Map	20	208.7	UniSTS
Whitehead-RH Map	20	232.9	UniSTS

D20S125E

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	20	36,148,194 - 36,148,345	UniSTS	GRCh37
Build 36	20	35,581,608 - 35,581,759	RGD	NCBI36
Celera	20	32,855,456 - 32,855,607	RGD
HuRef	20	32,883,912 - 32,884,063	UniSTS
Stanford-G3 RH Map	20	1968.0	UniSTS
NCBI RH Map	20	335.1	UniSTS
GeneMap99-G3 RH Map	20	2001.0	UniSTS

WI-21755

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	20	36,151,765 - 36,152,061	UniSTS	GRCh37
Build 36	20	35,585,179 - 35,585,475	RGD	NCBI36
Celera	20	32,859,028 - 32,859,324	RGD
Cytogenetic Map	20	q11.23	UniSTS
Cytogenetic Map	20	q11.2-q12	UniSTS
HuRef	20	32,887,485 - 32,887,781	UniSTS
GeneMap99-GB4 RH Map	20	209.89	UniSTS
Whitehead-RH Map	20	232.9	UniSTS

D20S1120

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	20	36,145,896 - 36,146,026	UniSTS	GRCh37
Build 36	20	35,579,310 - 35,579,440	RGD	NCBI36
Celera	20	32,853,159 - 32,853,289	RGD
Cytogenetic Map	20	q11.23	UniSTS
HuRef	20	32,881,614 - 32,881,744	UniSTS

RH27937

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	20	36,148,340 - 36,148,413	UniSTS	GRCh37
Build 36	20	35,581,754 - 35,581,827	RGD	NCBI36
Celera	20	32,855,602 - 32,855,675	RGD
Cytogenetic Map	20	q11.23	UniSTS
Cytogenetic Map	20	q11.2-q12	UniSTS
HuRef	20	32,884,058 - 32,884,131	UniSTS
GeneMap99-GB4 RH Map	20	231.12	UniSTS
NCBI RH Map	20	344.5	UniSTS

D20S125E

Human Assembly	Chr	Position (strand)	Source
Cytogenetic Map	20	q11.23	UniSTS
Cytogenetic Map	20	q11.2-q12	UniSTS
Stanford-G3 RH Map	20	1968.0	UniSTS
NCBI RH Map	20	335.1	UniSTS
GeneMap99-G3 RH Map	20	2001.0	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system

circulatory system

endocrine system

exocrine system

hemolymphoid system

hepatobiliary system

integumental system

musculoskeletal system

nervous system

renal system

reproductive system

respiratory system

sensory system

visual system

adipose tissue

appendage

entire extraembryonic component

pharyngeal arch

High

Medium

2404

2191

1708

609

1294

451

4352

2059

3587

409

1446

1606

172

1203

2785

Low

800

657

138

146

Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001167820	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001167821	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001167822	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001167823	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001317074	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001317075	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_006698	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017027599	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AA780553	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF053470	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AI920860	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK074498	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK124822	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AL049288	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AL109614	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC047692	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC071704	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BP293276	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CB155706	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH471077	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CP068258	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DA198124	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DA262965	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DA283758	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DA632207	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DA770824	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DA943717	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENST00000373537 ⟹ ENSP00000362637

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	20	37,517,417 - 37,527,876 (-)	Ensembl

RefSeq Acc Id:

ENST00000397131 ⟹ ENSP00000380320

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	20	37,518,893 - 37,524,551 (-)	Ensembl

RefSeq Acc Id:

ENST00000397134 ⟹ ENSP00000380323

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	20	37,518,853 - 37,520,303 (-)	Ensembl

RefSeq Acc Id:

ENST00000397135 ⟹ ENSP00000380324

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	20	37,518,816 - 37,527,723 (-)	Ensembl

RefSeq Acc Id:

ENST00000397137 ⟹ ENSP00000380326

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	20	37,517,417 - 37,527,732 (-)	Ensembl

RefSeq Acc Id:

ENST00000411780

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	20	37,492,472 - 37,509,231 (-)	Ensembl

RefSeq Acc Id:

ENST00000414080 ⟹ ENSP00000391768

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	20	37,518,989 - 37,527,878 (-)	Ensembl

RefSeq Acc Id:

ENST00000414542 ⟹ ENSP00000397172

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	20	37,517,418 - 37,527,931 (-)	Ensembl

RefSeq Acc Id:

ENST00000432507 ⟹ ENSP00000414973

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	20	37,518,912 - 37,520,589 (-)	Ensembl

RefSeq Acc Id:

ENST00000445723 ⟹ ENSP00000405953

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	20	37,518,940 - 37,527,878 (-)	Ensembl

RefSeq Acc Id:

ENST00000447625

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	20	37,492,534 - 37,495,762 (-)	Ensembl

RefSeq Acc Id:

ENST00000456058 ⟹ ENSP00000389735

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	20	37,519,154 - 37,521,693 (-)	Ensembl

RefSeq Acc Id:

ENST00000467603

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	20	37,502,414 - 37,527,862 (-)	Ensembl

RefSeq Acc Id:

ENST00000613961

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	20	37,499,893 - 37,503,975 (-)	Ensembl

RefSeq Acc Id:

NM_001167820 ⟹ NP_001161292

RefSeq Status:

REVIEWED

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	20	37,517,417 - 37,527,876 (-)	NCBI
GRCh37	20	36,145,819 - 36,156,333 (-)	RGD
Celera	20	32,853,082 - 32,863,596 (-)	RGD
HuRef	20	32,881,537 - 32,892,054 (-)	RGD
CHM1_1	20	36,048,633 - 36,059,135 (-)	NCBI
T2T-CHM13v2.0	20	39,241,512 - 39,251,972 (-)	NCBI

Sequence:

show sequence

CCTGCGGCGTCGGTGGCGAGCTGAGGTGGAGGCAGGCTGCGGCAGACGGCGACAGTGGCGGCGG
CGCCATGGCAGGGCTTGCAGGGGCGCGAGTTGGGAACCCTCTCCCACCCGAAACCCCGTCAGAC
TTACCTGCAGCAGCACGCGGAAGATGTACCAGCCGATGATGAGCAGTTCAGCCGAGGCCGCCGC
CACTGCCGCCATGGTTCCAAGAATGGATCCCTGCTGCCTTGGTGATCCCGGGCTGACAGCCAGA
GAGCACAGCGGCTCAGCTCCTGGAGAGTGAGGGTTGAAGAAAGCGGAGGGCAGCCGCCTGCGCC
CGCTGGCTCCCATTAGGTCGGTTCCTGCAGCGGTGCCCGGCAGCCTTGGTGAAGGCCCTGCCCG
GCAGAGATCATGTATTGCCTCCAGTGGCTGCTGCCCGTCCTCCTCATCCCCAAGCCCCTCAACC
CCGCCCTGTGGTTCAGCCACTCCATGTTCATGGGCTTCTACCTGCTCAGCTTCCTCCTGGAACG
GAAGCCTTGCACAATTTGTGCCTTGGTTTTCCTGGCAGCCCTGTTCCTTATCTGCTATAGCTGC
TGGGGAAACTGTTTCCTGTACCACTGCTCCGATTCCCCGCTTCCAGAATCGGCGCATGATCCCG
GCGTTGTGGGCACCTAACGGCCTGCCCTGTTAGCTTTCCAAGGAAGCAGAAGACGGGAGGGGAG
GCATTGACATAGGTCATAAAGCATTGGAGTTTCAAATCCCGCAGCCTCGCGGGTGTCACATTCC
TGACGGCGCCTTTTTGGCCTGTGATGTTTTATCCTTACAATGTGAATAATGGCACTGACCGGTG
CTTTTATTGTAAAGTCCTATAGTCGTGGGTGGTCTTGTGGTTGTGTGTGTTCTGTCCCCATCTA
GGTCCTGGCTGGCCGCATGACCACCCCTCTCGCCTCATTACTGTGAGGAGTCTGGGTCCATCCT
GGTCAGCTGCCCCAATGTGACCTGGGGCAGATAAAATGCCAGTCTCATTGTCACCTCTGTGACC
CCTCCTTGTCAGGGTCTCCTTCCTTCCCAGAATGTTACTGACTCCTCAGTCCCTCTTCTGGTTT
CCCTTTATTTCTCTTCTACCCTTTTCCTTTTTTGGGGAGTACCTGTCCAAGACAGGGCTCATTT
TTGCACTTATCTCGAATTTGAAGAGATTGCTGACGCCCGAGAGCCTCGCTTTTTCATCCTTCTT
TCCTTGTTCAGCAGGCTAGACAGAAACATGTCTTGACTGTTAGTTGTCCACAAATCTTCAGTAT
TTTCTCCACTTCATTTTTAAGAAAGGAAGCAACAGATAGATGTTGCTCTTTCACCTGGGTGTCT
GGGCTCAAGCTTTCCCGCCCAGCCTCACTTCCTTTGCCCTTCCTCCTGCCTTTCTCAACTGTCC
CAAGGAGGGGGCCTCATTGTGTCTCCCGTGCATGCTCTGCAGCATTGAAGTATGGTGTGTTCAC
GTAGTTCTAGCAGTCCCCAGCTGAGTGAGTGGGAGAGTACCTGTGTGTTTCGTAACGGCCTTGA
TCCCCTTGATAGATGTTTGGATATTTTTTGGTGTGCCCTGTGTGTGTGTGTGTACAAATACATG
TGTATATTCCTTTTAAAGAAGCTTTATCGAACGTGGTCTGATTTTGAGGTTTAGCAATAGCTAG
CTATATATGGTAGGTGCCGCTACAGTTTTTATTTAGCATGGGGATTGCAGAGTGACCAGCACAC
TGGACTCCGAGGTGGTTCAGACAAGACAGAGGGGAGCAGTGGCCATCATCCTCCCGCCAGGAGC
TTCTTCGTTCCTGCGCATATAGACTGTACATTATGAAGAATACCCAGGAAGACTTTGTGACTGT
CACTTGCTGCTTTTTCTGCGCTTCAGTAACAAGTGTTGGCAAACGAGACTTTCTCCTGGCCCCT
GCCTGCTGGAGATCAGCATGCCTGTCCTTTCAGTCTGATCCATCCATCTCTCTCTTGCCTGAGG
GGAAAGAGAGATGGGCCAGGCAGAGAACAGAACTGGAGGCAGTCCATCTAGGGAATGGGACTGT
GAGGCCATACTTGTGAAACGTCTGGACTGCTATTCTAGAGCTTTTATTTGGTGTGTTCGTTGCA
CAGCTGTTTGAAATGTTTAATAAAGCTTTATAAACTTTA

hide sequence

RefSeq Acc Id:

NM_001167821 ⟹ NP_001161293

RefSeq Status:

REVIEWED

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	20	37,517,417 - 37,527,732 (-)	NCBI
GRCh37	20	36,145,819 - 36,156,333 (-)	RGD
Celera	20	32,853,082 - 32,863,596 (-)	RGD
HuRef	20	32,881,537 - 32,892,054 (-)	RGD
CHM1_1	20	36,048,633 - 36,058,936 (-)	NCBI
T2T-CHM13v2.0	20	39,241,512 - 39,251,828 (-)	NCBI

Sequence:

show sequence

ATATTGTCCCTTCTGGGTCACCTTAGGCGTCGCCGGGTCCCCGTCACTGGGGTTTTCCTTCCGC
ATACCCCGGGAAGGCAGGGCGCCCCTGTCCGGCTTCAGGATCCCTGCTGCCTTGGTGATCCCGG
GCTGACAGCCAGAGAGCACAGCGGCTCAGCTCCTGGAGAGTGAGGGTTGAAGAAAGCGGAGGGC
AGCCGCCTGCGCCCGCTGGCTCCCATTAGGTCGGTTCCTGCAGCGGTGCCCGGCAGCCTTGGTG
AAGGCCCTGCCCGGCAGAGATCATGTATTGCCTCCAGTGGCTGCTGCCCGTCCTCCTCATCCCC
AAGCCCCTCAACCCCGCCCTGTGGTTCAGCCACTCCATGTTCATGGGCTTCTACCTGCTCAGCT
TCCTCCTGGAACGGAAGCCTTGCACAATTTGTGCCTTGGTTTTCCTGGCAGCCCTGTTCCTTAT
CTGCTATAGCTGCTGGGGAAACTGTTTCCTGTACCACTGCTCCGATTCCCCGCTTCCAGAATCG
GCGCATGATCCCGGCGTTGTGGGCACCTAACGGCCTGCCCTGTTAGCTTTCCAAGGAAGCAGAA
GACGGGAGGGGAGGCATTGACATAGGTCATAAAGCATTGGAGTTTCAAATCCCGCAGCCTCGCG
GGTGTCACATTCCTGACGGCGCCTTTTTGGCCTGTGATGTTTTATCCTTACAATGTGAATAATG
GCACTGACCGGTGCTTTTATTGTAAAGTCCTATAGTCGTGGGTGGTCTTGTGGTTGTGTGTGTT
CTGTCCCCATCTAGGTCCTGGCTGGCCGCATGACCACCCCTCTCGCCTCATTACTGTGAGGAGT
CTGGGTCCATCCTGGTCAGCTGCCCCAATGTGACCTGGGGCAGATAAAATGCCAGTCTCATTGT
CACCTCTGTGACCCCTCCTTGTCAGGGTCTCCTTCCTTCCCAGAATGTTACTGACTCCTCAGTC
CCTCTTCTGGTTTCCCTTTATTTCTCTTCTACCCTTTTCCTTTTTTGGGGAGTACCTGTCCAAG
ACAGGGCTCATTTTTGCACTTATCTCGAATTTGAAGAGATTGCTGACGCCCGAGAGCCTCGCTT
TTTCATCCTTCTTTCCTTGTTCAGCAGGCTAGACAGAAACATGTCTTGACTGTTAGTTGTCCAC
AAATCTTCAGTATTTTCTCCACTTCATTTTTAAGAAAGGAAGCAACAGATAGATGTTGCTCTTT
CACCTGGGTGTCTGGGCTCAAGCTTTCCCGCCCAGCCTCACTTCCTTTGCCCTTCCTCCTGCCT
TTCTCAACTGTCCCAAGGAGGGGGCCTCATTGTGTCTCCCGTGCATGCTCTGCAGCATTGAAGT
ATGGTGTGTTCACGTAGTTCTAGCAGTCCCCAGCTGAGTGAGTGGGAGAGTACCTGTGTGTTTC
GTAACGGCCTTGATCCCCTTGATAGATGTTTGGATATTTTTTGGTGTGCCCTGTGTGTGTGTGT
GTACAAATACATGTGTATATTCCTTTTAAAGAAGCTTTATCGAACGTGGTCTGATTTTGAGGTT
TAGCAATAGCTAGCTATATATGGTAGGTGCCGCTACAGTTTTTATTTAGCATGGGGATTGCAGA
GTGACCAGCACACTGGACTCCGAGGTGGTTCAGACAAGACAGAGGGGAGCAGTGGCCATCATCC
TCCCGCCAGGAGCTTCTTCGTTCCTGCGCATATAGACTGTACATTATGAAGAATACCCAGGAAG
ACTTTGTGACTGTCACTTGCTGCTTTTTCTGCGCTTCAGTAACAAGTGTTGGCAAACGAGACTT
TCTCCTGGCCCCTGCCTGCTGGAGATCAGCATGCCTGTCCTTTCAGTCTGATCCATCCATCTCT
CTCTTGCCTGAGGGGAAAGAGAGATGGGCCAGGCAGAGAACAGAACTGGAGGCAGTCCATCTAG
GGAATGGGACTGTGAGGCCATACTTGTGAAACGTCTGGACTGCTATTCTAGAGCTTTTATTTGG
TGTGTTCGTTGCACAGCTGTTTGAAATGTTTAATAAAGCTTTATAAACTTTA

hide sequence

RefSeq Acc Id:

NM_001167822 ⟹ NP_001161294

RefSeq Status:

REVIEWED

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	20	37,517,417 - 37,527,732 (-)	NCBI
GRCh37	20	36,145,819 - 36,156,333 (-)	RGD
Celera	20	32,853,082 - 32,863,596 (-)	RGD
HuRef	20	32,881,537 - 32,892,054 (-)	RGD
CHM1_1	20	36,048,633 - 36,058,936 (-)	NCBI
T2T-CHM13v2.0	20	39,241,512 - 39,251,828 (-)	NCBI

Sequence:

show sequence

ATATTGTCCCTTCTGGGTCACCTTAGGCGTCGCCGGGTCCCCGTCACTGGGGTTTTCCTTCCGC
ATACCCCGGGAAGGCAGGGCGCCCCTGTCCGGCTTCAGGTGATTGCCGTGATTGGACCTAGCCT
GGGCCTTGGGGGGTCCCTTCCCAGCCCGGAGGATCCCTGCTGCCTTGGTGATCCCGGGCTGACA
GCCAGAGAGCACAGCGGCTCAGCTCCTGGAGAGTGAGGGTTGAAGAAAGCGGAGGGCAGCCGCC
TGCGCCCGCTGGCTCCCATTAGGTCGGTTCCTGCAGCGGTGCCCGGCAGCCTTGGTGAAGGCCC
TGCCCGGCAGAGATCATGTATTGCCTCCAGTGGCTGCTGCCCGTCCTCCTCATCCCCAAGCCCC
TCAACCCCGCCCTGTGGTTCAGCCACTCCATGTTCATGGGCTTCTACCTGCTCAGCTTCCTCCT
GGAACGGAAGCCTTGCACAATTTGTGCCTTGGTTTTCCTGGCAGCCCTGTTCCTTATCTGCTAT
AGCTGCTGGGGAAACTGTTTCCTGTACCACTGCTCCGATTCCCCGCTTCCAGAATCGGCGCATG
ATCCCGGCGTTGTGGGCACCTAACGGCCTGCCCTGTTAGCTTTCCAAGGAAGCAGAAGACGGGA
GGGGAGGCATTGACATAGGTCATAAAGCATTGGAGTTTCAAATCCCGCAGCCTCGCGGGTGTCA
CATTCCTGACGGCGCCTTTTTGGCCTGTGATGTTTTATCCTTACAATGTGAATAATGGCACTGA
CCGGTGCTTTTATTGTAAAGTCCTATAGTCGTGGGTGGTCTTGTGGTTGTGTGTGTTCTGTCCC
CATCTAGGTCCTGGCTGGCCGCATGACCACCCCTCTCGCCTCATTACTGTGAGGAGTCTGGGTC
CATCCTGGTCAGCTGCCCCAATGTGACCTGGGGCAGATAAAATGCCAGTCTCATTGTCACCTCT
GTGACCCCTCCTTGTCAGGGTCTCCTTCCTTCCCAGAATGTTACTGACTCCTCAGTCCCTCTTC
TGGTTTCCCTTTATTTCTCTTCTACCCTTTTCCTTTTTTGGGGAGTACCTGTCCAAGACAGGGC
TCATTTTTGCACTTATCTCGAATTTGAAGAGATTGCTGACGCCCGAGAGCCTCGCTTTTTCATC
CTTCTTTCCTTGTTCAGCAGGCTAGACAGAAACATGTCTTGACTGTTAGTTGTCCACAAATCTT
CAGTATTTTCTCCACTTCATTTTTAAGAAAGGAAGCAACAGATAGATGTTGCTCTTTCACCTGG
GTGTCTGGGCTCAAGCTTTCCCGCCCAGCCTCACTTCCTTTGCCCTTCCTCCTGCCTTTCTCAA
CTGTCCCAAGGAGGGGGCCTCATTGTGTCTCCCGTGCATGCTCTGCAGCATTGAAGTATGGTGT
GTTCACGTAGTTCTAGCAGTCCCCAGCTGAGTGAGTGGGAGAGTACCTGTGTGTTTCGTAACGG
CCTTGATCCCCTTGATAGATGTTTGGATATTTTTTGGTGTGCCCTGTGTGTGTGTGTGTACAAA
TACATGTGTATATTCCTTTTAAAGAAGCTTTATCGAACGTGGTCTGATTTTGAGGTTTAGCAAT
AGCTAGCTATATATGGTAGGTGCCGCTACAGTTTTTATTTAGCATGGGGATTGCAGAGTGACCA
GCACACTGGACTCCGAGGTGGTTCAGACAAGACAGAGGGGAGCAGTGGCCATCATCCTCCCGCC
AGGAGCTTCTTCGTTCCTGCGCATATAGACTGTACATTATGAAGAATACCCAGGAAGACTTTGT
GACTGTCACTTGCTGCTTTTTCTGCGCTTCAGTAACAAGTGTTGGCAAACGAGACTTTCTCCTG
GCCCCTGCCTGCTGGAGATCAGCATGCCTGTCCTTTCAGTCTGATCCATCCATCTCTCTCTTGC
CTGAGGGGAAAGAGAGATGGGCCAGGCAGAGAACAGAACTGGAGGCAGTCCATCTAGGGAATGG
GACTGTGAGGCCATACTTGTGAAACGTCTGGACTGCTATTCTAGAGCTTTTATTTGGTGTGTTC
GTTGCACAGCTGTTTGAAATGTTTAATAAAGCTTTATAAACTTTA

hide sequence

RefSeq Acc Id:

NM_001167823 ⟹ NP_001161295

RefSeq Status:

REVIEWED

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	20	37,517,417 - 37,524,453 (-)	NCBI
GRCh37	20	36,145,819 - 36,156,333 (-)	RGD
Celera	20	32,853,082 - 32,863,596 (-)	RGD
HuRef	20	32,881,537 - 32,892,054 (-)	RGD
CHM1_1	20	36,048,633 - 36,055,754 (-)	NCBI
T2T-CHM13v2.0	20	39,241,512 - 39,248,550 (-)	NCBI

Sequence:

show sequence

GAGAGGAAGACAAGTCCGAGGCCGAGCACTGCCCACCCTGACGTGATGGCAGGGGAGAGCCCAG
GGCCACGGACCTGGATCCCTGCTGCCTTGGTGATCCCGGGCTGACAGCCAGAGAGCACAGCGGC
TCAGCTCCTGGAGAGTGAGGGTTGAAGAAAGCGGAGGGCAGCCGCCTGCGCCCGCTGGCTCCCA
TTAGGTCGGTTCCTGCAGCGGTGCCCGGCAGCCTTGGTGAAGGCCCTGCCCGGCAGAGATCATG
TATTGCCTCCAGTGGCTGCTGCCCGTCCTCCTCATCCCCAAGCCCCTCAACCCCGCCCTGTGGT
TCAGCCACTCCATGTTCATGGGCTTCTACCTGCTCAGCTTCCTCCTGGAACGGAAGCCTTGCAC
AATTTGTGCCTTGGTTTTCCTGGCAGCCCTGTTCCTTATCTGCTATAGCTGCTGGGGAAACTGT
TTCCTGTACCACTGCTCCGATTCCCCGCTTCCAGAATCGGCGCATGATCCCGGCGTTGTGGGCA
CCTAACGGCCTGCCCTGTTAGCTTTCCAAGGAAGCAGAAGACGGGAGGGGAGGCATTGACATAG
GTCATAAAGCATTGGAGTTTCAAATCCCGCAGCCTCGCGGGTGTCACATTCCTGACGGCGCCTT
TTTGGCCTGTGATGTTTTATCCTTACAATGTGAATAATGGCACTGACCGGTGCTTTTATTGTAA
AGTCCTATAGTCGTGGGTGGTCTTGTGGTTGTGTGTGTTCTGTCCCCATCTAGGTCCTGGCTGG
CCGCATGACCACCCCTCTCGCCTCATTACTGTGAGGAGTCTGGGTCCATCCTGGTCAGCTGCCC
CAATGTGACCTGGGGCAGATAAAATGCCAGTCTCATTGTCACCTCTGTGACCCCTCCTTGTCAG
GGTCTCCTTCCTTCCCAGAATGTTACTGACTCCTCAGTCCCTCTTCTGGTTTCCCTTTATTTCT
CTTCTACCCTTTTCCTTTTTTGGGGAGTACCTGTCCAAGACAGGGCTCATTTTTGCACTTATCT
CGAATTTGAAGAGATTGCTGACGCCCGAGAGCCTCGCTTTTTCATCCTTCTTTCCTTGTTCAGC
AGGCTAGACAGAAACATGTCTTGACTGTTAGTTGTCCACAAATCTTCAGTATTTTCTCCACTTC
ATTTTTAAGAAAGGAAGCAACAGATAGATGTTGCTCTTTCACCTGGGTGTCTGGGCTCAAGCTT
TCCCGCCCAGCCTCACTTCCTTTGCCCTTCCTCCTGCCTTTCTCAACTGTCCCAAGGAGGGGGC
CTCATTGTGTCTCCCGTGCATGCTCTGCAGCATTGAAGTATGGTGTGTTCACGTAGTTCTAGCA
GTCCCCAGCTGAGTGAGTGGGAGAGTACCTGTGTGTTTCGTAACGGCCTTGATCCCCTTGATAG
ATGTTTGGATATTTTTTGGTGTGCCCTGTGTGTGTGTGTGTACAAATACATGTGTATATTCCTT
TTAAAGAAGCTTTATCGAACGTGGTCTGATTTTGAGGTTTAGCAATAGCTAGCTATATATGGTA
GGTGCCGCTACAGTTTTTATTTAGCATGGGGATTGCAGAGTGACCAGCACACTGGACTCCGAGG
TGGTTCAGACAAGACAGAGGGGAGCAGTGGCCATCATCCTCCCGCCAGGAGCTTCTTCGTTCCT
GCGCATATAGACTGTACATTATGAAGAATACCCAGGAAGACTTTGTGACTGTCACTTGCTGCTT
TTTCTGCGCTTCAGTAACAAGTGTTGGCAAACGAGACTTTCTCCTGGCCCCTGCCTGCTGGAGA
TCAGCATGCCTGTCCTTTCAGTCTGATCCATCCATCTCTCTCTTGCCTGAGGGGAAAGAGAGAT
GGGCCAGGCAGAGAACAGAACTGGAGGCAGTCCATCTAGGGAATGGGACTGTGAGGCCATACTT
GTGAAACGTCTGGACTGCTATTCTAGAGCTTTTATTTGGTGTGTTCGTTGCACAGCTGTTTGAA
ATGTTTAATAAAGCTTTATAAACTTTA

hide sequence

RefSeq Acc Id:

NM_001317074 ⟹ NP_001304003

RefSeq Status:

REVIEWED

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	20	37,517,417 - 37,520,589 (-)	NCBI
CHM1_1	20	36,048,633 - 36,051,807 (-)	NCBI
T2T-CHM13v2.0	20	39,241,512 - 39,244,684 (-)	NCBI

Sequence:

show sequence

ATCTGTAGGAGGGATACAGGAAGGATTGGCGCCCTTCGTATGCACGGAAGGAATGAGCTCTACG
GAGAAGTGGTTGGAATATGCTTGGGGATAGTTTTCTGCTGGACAGGTCGTTTCGACCTCAGTCT
TCCGCTCCCCTCCCCCAAGCCCTGGATCCCTGCTGCCTTGGTGATCCCGGGCTGACAGCCAGAG
AGCACAGCGGCTCAGCTCCTGGAGAGTGAGGGTTGAAGAAAGCGGAGGGCAGCCGCCTGCGCCC
GCTGGCTCCCATTAGGTCGGTTCCTGCAGCGGTGCCCGGCAGCCTTGGTGAAGGCCCTGCCCGG
CAGAGATCATGTATTGCCTCCAGTGGCTGCTGCCCGTCCTCCTCATCCCCAAGCCCCTCAACCC
CGCCCTGTGGTTCAGCCACTCCATGTTCATGGGCTTCTACCTGCTCAGCTTCCTCCTGGAACGG
AAGCCTTGCACAATTTGTGCCTTGGTTTTCCTGGCAGCCCTGTTCCTTATCTGCTATAGCTGCT
GGGGAAACTGTTTCCTGTACCACTGCTCCGATTCCCCGCTTCCAGAATCGGCGCATGATCCCGG
CGTTGTGGGCACCTAACGGCCTGCCCTGTTAGCTTTCCAAGGAAGCAGAAGACGGGAGGGGAGG
CATTGACATAGGTCATAAAGCATTGGAGTTTCAAATCCCGCAGCCTCGCGGGTGTCACATTCCT
GACGGCGCCTTTTTGGCCTGTGATGTTTTATCCTTACAATGTGAATAATGGCACTGACCGGTGC
TTTTATTGTAAAGTCCTATAGTCGTGGGTGGTCTTGTGGTTGTGTGTGTTCTGTCCCCATCTAG
GTCCTGGCTGGCCGCATGACCACCCCTCTCGCCTCATTACTGTGAGGAGTCTGGGTCCATCCTG
GTCAGCTGCCCCAATGTGACCTGGGGCAGATAAAATGCCAGTCTCATTGTCACCTCTGTGACCC
CTCCTTGTCAGGGTCTCCTTCCTTCCCAGAATGTTACTGACTCCTCAGTCCCTCTTCTGGTTTC
CCTTTATTTCTCTTCTACCCTTTTCCTTTTTTGGGGAGTACCTGTCCAAGACAGGGCTCATTTT
TGCACTTATCTCGAATTTGAAGAGATTGCTGACGCCCGAGAGCCTCGCTTTTTCATCCTTCTTT
CCTTGTTCAGCAGGCTAGACAGAAACATGTCTTGACTGTTAGTTGTCCACAAATCTTCAGTATT
TTCTCCACTTCATTTTTAAGAAAGGAAGCAACAGATAGATGTTGCTCTTTCACCTGGGTGTCTG
GGCTCAAGCTTTCCCGCCCAGCCTCACTTCCTTTGCCCTTCCTCCTGCCTTTCTCAACTGTCCC
AAGGAGGGGGCCTCATTGTGTCTCCCGTGCATGCTCTGCAGCATTGAAGTATGGTGTGTTCACG
TAGTTCTAGCAGTCCCCAGCTGAGTGAGTGGGAGAGTACCTGTGTGTTTCGTAACGGCCTTGAT
CCCCTTGATAGATGTTTGGATATTTTTTGGTGTGCCCTGTGTGTGTGTGTGTACAAATACATGT
GTATATTCCTTTTAAAGAAGCTTTATCGAACGTGGTCTGATTTTGAGGTTTAGCAATAGCTAGC
TATATATGGTAGGTGCCGCTACAGTTTTTATTTAGCATGGGGATTGCAGAGTGACCAGCACACT
GGACTCCGAGGTGGTTCAGACAAGACAGAGGGGAGCAGTGGCCATCATCCTCCCGCCAGGAGCT
TCTTCGTTCCTGCGCATATAGACTGTACATTATGAAGAATACCCAGGAAGACTTTGTGACTGTC
ACTTGCTGCTTTTTCTGCGCTTCAGTAACAAGTGTTGGCAAACGAGACTTTCTCCTGGCCCCTG
CCTGCTGGAGATCAGCATGCCTGTCCTTTCAGTCTGATCCATCCATCTCTCTCTTGCCTGAGGG
GAAAGAGAGATGGGCCAGGCAGAGAACAGAACTGGAGGCAGTCCATCTAGGGAATGGGACTGTG
AGGCCATACTTGTGAAACGTCTGGACTGCTATTCTAGAGCTTTTATTTGGTGTGTTCGTTGCAC
AGCTGTTTGAAATGTTTAATAAAGCTTTATAAACTTTA

hide sequence

RefSeq Acc Id:

NM_001317075 ⟹ NP_001304004

RefSeq Status:

REVIEWED

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	20	37,517,417 - 37,520,303 (-)	NCBI
CHM1_1	20	36,048,633 - 36,051,521 (-)	NCBI
T2T-CHM13v2.0	20	39,241,512 - 39,244,398 (-)	NCBI

Sequence:

show sequence

TAGACCGCCAGTCTTGTGGGTCCCTCGCACAGCGCGGATTTTCGGGCGGGAAGACCGGAATGCG
GTTTGATCCCTGCTGCCTTGGTGATCCCGGGCTGACAGCCAGAGAGCACAGCGGCTCAGCTCCT
GGAGAGTGAGGGTTGAAGAAAGCGGAGGGCAGCCGCCTGCGCCCGCTGGCTCCCATTAGGTCGG
TTCCTGCAGCGGTGCCCGGCAGCCTTGGTGAAGGCCCTGCCCGGCAGAGATCATGTATTGCCTC
CAGTGGCTGCTGCCCGTCCTCCTCATCCCCAAGCCCCTCAACCCCGCCCTGTGGTTCAGCCACT
CCATGTTCATGGGCTTCTACCTGCTCAGCTTCCTCCTGGAACGGAAGCCTTGCACAATTTGTGC
CTTGGTTTTCCTGGCAGCCCTGTTCCTTATCTGCTATAGCTGCTGGGGAAACTGTTTCCTGTAC
CACTGCTCCGATTCCCCGCTTCCAGAATCGGCGCATGATCCCGGCGTTGTGGGCACCTAACGGC
CTGCCCTGTTAGCTTTCCAAGGAAGCAGAAGACGGGAGGGGAGGCATTGACATAGGTCATAAAG
CATTGGAGTTTCAAATCCCGCAGCCTCGCGGGTGTCACATTCCTGACGGCGCCTTTTTGGCCTG
TGATGTTTTATCCTTACAATGTGAATAATGGCACTGACCGGTGCTTTTATTGTAAAGTCCTATA
GTCGTGGGTGGTCTTGTGGTTGTGTGTGTTCTGTCCCCATCTAGGTCCTGGCTGGCCGCATGAC
CACCCCTCTCGCCTCATTACTGTGAGGAGTCTGGGTCCATCCTGGTCAGCTGCCCCAATGTGAC
CTGGGGCAGATAAAATGCCAGTCTCATTGTCACCTCTGTGACCCCTCCTTGTCAGGGTCTCCTT
CCTTCCCAGAATGTTACTGACTCCTCAGTCCCTCTTCTGGTTTCCCTTTATTTCTCTTCTACCC
TTTTCCTTTTTTGGGGAGTACCTGTCCAAGACAGGGCTCATTTTTGCACTTATCTCGAATTTGA
AGAGATTGCTGACGCCCGAGAGCCTCGCTTTTTCATCCTTCTTTCCTTGTTCAGCAGGCTAGAC
AGAAACATGTCTTGACTGTTAGTTGTCCACAAATCTTCAGTATTTTCTCCACTTCATTTTTAAG
AAAGGAAGCAACAGATAGATGTTGCTCTTTCACCTGGGTGTCTGGGCTCAAGCTTTCCCGCCCA
GCCTCACTTCCTTTGCCCTTCCTCCTGCCTTTCTCAACTGTCCCAAGGAGGGGGCCTCATTGTG
TCTCCCGTGCATGCTCTGCAGCATTGAAGTATGGTGTGTTCACGTAGTTCTAGCAGTCCCCAGC
TGAGTGAGTGGGAGAGTACCTGTGTGTTTCGTAACGGCCTTGATCCCCTTGATAGATGTTTGGA
TATTTTTTGGTGTGCCCTGTGTGTGTGTGTGTACAAATACATGTGTATATTCCTTTTAAAGAAG
CTTTATCGAACGTGGTCTGATTTTGAGGTTTAGCAATAGCTAGCTATATATGGTAGGTGCCGCT
ACAGTTTTTATTTAGCATGGGGATTGCAGAGTGACCAGCACACTGGACTCCGAGGTGGTTCAGA
CAAGACAGAGGGGAGCAGTGGCCATCATCCTCCCGCCAGGAGCTTCTTCGTTCCTGCGCATATA
GACTGTACATTATGAAGAATACCCAGGAAGACTTTGTGACTGTCACTTGCTGCTTTTTCTGCGC
TTCAGTAACAAGTGTTGGCAAACGAGACTTTCTCCTGGCCCCTGCCTGCTGGAGATCAGCATGC
CTGTCCTTTCAGTCTGATCCATCCATCTCTCTCTTGCCTGAGGGGAAAGAGAGATGGGCCAGGC
AGAGAACAGAACTGGAGGCAGTCCATCTAGGGAATGGGACTGTGAGGCCATACTTGTGAAACGT
CTGGACTGCTATTCTAGAGCTTTTATTTGGTGTGTTCGTTGCACAGCTGTTTGAAATGTTTAAT
AAAGCTTTATAAACTTTA

hide sequence

RefSeq Acc Id:

NM_006698 ⟹ NP_006689

RefSeq Status:

REVIEWED

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	20	37,517,417 - 37,527,876 (-)	NCBI
GRCh37	20	36,145,819 - 36,156,333 (-)	RGD
Build 36	20	35,579,233 - 35,589,717 (-)	NCBI Archive
Celera	20	32,853,082 - 32,863,596 (-)	RGD
HuRef	20	32,881,537 - 32,892,054 (-)	RGD
CHM1_1	20	36,048,633 - 36,059,135 (-)	NCBI
T2T-CHM13v2.0	20	39,241,512 - 39,251,972 (-)	NCBI

Sequence:

show sequence

CCTGCGGCGTCGGTGGCGAGCTGAGGTGGAGGCAGGCTGCGGCAGACGGCGACAGTGGCGGCGG
CGCCATGGCAGGGCTTGCAGGATCCCTGCTGCCTTGGTGATCCCGGGCTGACAGCCAGAGAGCA
CAGCGGCTCAGCTCCTGGAGAGTGAGGGTTGAAGAAAGCGGAGGGCAGCCGCCTGCGCCCGCTG
GCTCCCATTAGGTCGGTTCCTGCAGCGGTGCCCGGCAGCCTTGGTGAAGGCCCTGCCCGGCAGA
GATCATGTATTGCCTCCAGTGGCTGCTGCCCGTCCTCCTCATCCCCAAGCCCCTCAACCCCGCC
CTGTGGTTCAGCCACTCCATGTTCATGGGCTTCTACCTGCTCAGCTTCCTCCTGGAACGGAAGC
CTTGCACAATTTGTGCCTTGGTTTTCCTGGCAGCCCTGTTCCTTATCTGCTATAGCTGCTGGGG
AAACTGTTTCCTGTACCACTGCTCCGATTCCCCGCTTCCAGAATCGGCGCATGATCCCGGCGTT
GTGGGCACCTAACGGCCTGCCCTGTTAGCTTTCCAAGGAAGCAGAAGACGGGAGGGGAGGCATT
GACATAGGTCATAAAGCATTGGAGTTTCAAATCCCGCAGCCTCGCGGGTGTCACATTCCTGACG
GCGCCTTTTTGGCCTGTGATGTTTTATCCTTACAATGTGAATAATGGCACTGACCGGTGCTTTT
ATTGTAAAGTCCTATAGTCGTGGGTGGTCTTGTGGTTGTGTGTGTTCTGTCCCCATCTAGGTCC
TGGCTGGCCGCATGACCACCCCTCTCGCCTCATTACTGTGAGGAGTCTGGGTCCATCCTGGTCA
GCTGCCCCAATGTGACCTGGGGCAGATAAAATGCCAGTCTCATTGTCACCTCTGTGACCCCTCC
TTGTCAGGGTCTCCTTCCTTCCCAGAATGTTACTGACTCCTCAGTCCCTCTTCTGGTTTCCCTT
TATTTCTCTTCTACCCTTTTCCTTTTTTGGGGAGTACCTGTCCAAGACAGGGCTCATTTTTGCA
CTTATCTCGAATTTGAAGAGATTGCTGACGCCCGAGAGCCTCGCTTTTTCATCCTTCTTTCCTT
GTTCAGCAGGCTAGACAGAAACATGTCTTGACTGTTAGTTGTCCACAAATCTTCAGTATTTTCT
CCACTTCATTTTTAAGAAAGGAAGCAACAGATAGATGTTGCTCTTTCACCTGGGTGTCTGGGCT
CAAGCTTTCCCGCCCAGCCTCACTTCCTTTGCCCTTCCTCCTGCCTTTCTCAACTGTCCCAAGG
AGGGGGCCTCATTGTGTCTCCCGTGCATGCTCTGCAGCATTGAAGTATGGTGTGTTCACGTAGT
TCTAGCAGTCCCCAGCTGAGTGAGTGGGAGAGTACCTGTGTGTTTCGTAACGGCCTTGATCCCC
TTGATAGATGTTTGGATATTTTTTGGTGTGCCCTGTGTGTGTGTGTGTACAAATACATGTGTAT
ATTCCTTTTAAAGAAGCTTTATCGAACGTGGTCTGATTTTGAGGTTTAGCAATAGCTAGCTATA
TATGGTAGGTGCCGCTACAGTTTTTATTTAGCATGGGGATTGCAGAGTGACCAGCACACTGGAC
TCCGAGGTGGTTCAGACAAGACAGAGGGGAGCAGTGGCCATCATCCTCCCGCCAGGAGCTTCTT
CGTTCCTGCGCATATAGACTGTACATTATGAAGAATACCCAGGAAGACTTTGTGACTGTCACTT
GCTGCTTTTTCTGCGCTTCAGTAACAAGTGTTGGCAAACGAGACTTTCTCCTGGCCCCTGCCTG
CTGGAGATCAGCATGCCTGTCCTTTCAGTCTGATCCATCCATCTCTCTCTTGCCTGAGGGGAAA
GAGAGATGGGCCAGGCAGAGAACAGAACTGGAGGCAGTCCATCTAGGGAATGGGACTGTGAGGC
CATACTTGTGAAACGTCTGGACTGCTATTCTAGAGCTTTTATTTGGTGTGTTCGTTGCACAGCT
GTTTGAAATGTTTAATAAAGCTTTATAAACTTTA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001161292	(Get FASTA)	NCBI Sequence Viewer
	NP_001161293	(Get FASTA)	NCBI Sequence Viewer
	NP_001161294	(Get FASTA)	NCBI Sequence Viewer
	NP_001161295	(Get FASTA)	NCBI Sequence Viewer
	NP_001304003	(Get FASTA)	NCBI Sequence Viewer
	NP_001304004	(Get FASTA)	NCBI Sequence Viewer
	NP_006689	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAC06370	(Get FASTA)	NCBI Sequence Viewer
	AAH47692	(Get FASTA)	NCBI Sequence Viewer
	AAH71704	(Get FASTA)	NCBI Sequence Viewer
	EAW76056	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSP00000362637
	ENSP00000362637.2
	ENSP00000380320
	ENSP00000380320.1
	ENSP00000380323
	ENSP00000380323.1
	ENSP00000380324
	ENSP00000380324.1
	ENSP00000380326
	ENSP00000380326.1
	ENSP00000389735.1
	ENSP00000391768.1
	ENSP00000397172
	ENSP00000397172.2
	ENSP00000405953.1
	ENSP00000414973
	ENSP00000414973.1
GenBank Protein	P62952	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_006689 ⟸ NM_006698
- UniProtKB:	O60629 (UniProtKB/Swiss-Prot), A2A2K7 (UniProtKB/Swiss-Prot), Q9D3B5 (UniProtKB/Swiss-Prot), P62952 (UniProtKB/Swiss-Prot), A2A2K8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MYCLQWLLPVLLIPKPLNPALWFSHSMFMGFYLLSFLLERKPCTICALVFLAALFLICYSCWGN CFLYHCSDSPLPESAHDPGVVGT hide sequence

RefSeq Acc Id:	NP_001161292 ⟸ NM_001167820
- UniProtKB:	O60629 (UniProtKB/Swiss-Prot), A2A2K7 (UniProtKB/Swiss-Prot), Q9D3B5 (UniProtKB/Swiss-Prot), P62952 (UniProtKB/Swiss-Prot), A2A2K8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MYCLQWLLPVLLIPKPLNPALWFSHSMFMGFYLLSFLLERKPCTICALVFLAALFLICYSCWGN CFLYHCSDSPLPESAHDPGVVGT hide sequence

RefSeq Acc Id:	NP_001161293 ⟸ NM_001167821
- UniProtKB:	O60629 (UniProtKB/Swiss-Prot), A2A2K7 (UniProtKB/Swiss-Prot), Q9D3B5 (UniProtKB/Swiss-Prot), P62952 (UniProtKB/Swiss-Prot), A2A2K8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MYCLQWLLPVLLIPKPLNPALWFSHSMFMGFYLLSFLLERKPCTICALVFLAALFLICYSCWGN CFLYHCSDSPLPESAHDPGVVGT hide sequence

RefSeq Acc Id:	NP_001161294 ⟸ NM_001167822
- UniProtKB:	O60629 (UniProtKB/Swiss-Prot), A2A2K7 (UniProtKB/Swiss-Prot), Q9D3B5 (UniProtKB/Swiss-Prot), P62952 (UniProtKB/Swiss-Prot), A2A2K8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MYCLQWLLPVLLIPKPLNPALWFSHSMFMGFYLLSFLLERKPCTICALVFLAALFLICYSCWGN CFLYHCSDSPLPESAHDPGVVGT hide sequence

RefSeq Acc Id:	NP_001161295 ⟸ NM_001167823
- UniProtKB:	O60629 (UniProtKB/Swiss-Prot), A2A2K7 (UniProtKB/Swiss-Prot), Q9D3B5 (UniProtKB/Swiss-Prot), P62952 (UniProtKB/Swiss-Prot), A2A2K8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MYCLQWLLPVLLIPKPLNPALWFSHSMFMGFYLLSFLLERKPCTICALVFLAALFLICYSCWGN CFLYHCSDSPLPESAHDPGVVGT hide sequence

RefSeq Acc Id:	NP_001304003 ⟸ NM_001317074
- UniProtKB:	O60629 (UniProtKB/Swiss-Prot), A2A2K7 (UniProtKB/Swiss-Prot), Q9D3B5 (UniProtKB/Swiss-Prot), P62952 (UniProtKB/Swiss-Prot), A2A2K8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MYCLQWLLPVLLIPKPLNPALWFSHSMFMGFYLLSFLLERKPCTICALVFLAALFLICYSCWGN CFLYHCSDSPLPESAHDPGVVGT hide sequence

RefSeq Acc Id:	NP_001304004 ⟸ NM_001317075
- UniProtKB:	O60629 (UniProtKB/Swiss-Prot), A2A2K7 (UniProtKB/Swiss-Prot), Q9D3B5 (UniProtKB/Swiss-Prot), P62952 (UniProtKB/Swiss-Prot), A2A2K8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MYCLQWLLPVLLIPKPLNPALWFSHSMFMGFYLLSFLLERKPCTICALVFLAALFLICYSCWGN CFLYHCSDSPLPESAHDPGVVGT hide sequence

RefSeq Acc Id:

ENSP00000362637 ⟸ ENST00000373537

RefSeq Acc Id:

ENSP00000397172 ⟸ ENST00000414542

RefSeq Acc Id:

ENSP00000391768 ⟸ ENST00000414080

RefSeq Acc Id:

ENSP00000389735 ⟸ ENST00000456058

RefSeq Acc Id:

ENSP00000405953 ⟸ ENST00000445723

RefSeq Acc Id:

ENSP00000414973 ⟸ ENST00000432507

RefSeq Acc Id:

ENSP00000380326 ⟸ ENST00000397137

RefSeq Acc Id:

ENSP00000380324 ⟸ ENST00000397135

RefSeq Acc Id:

ENSP00000380323 ⟸ ENST00000397134

RefSeq Acc Id:

ENSP00000380320 ⟸ ENST00000397131

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-P62952-F1-model_v2	AlphaFold	P62952	1-87	view protein structure

Promoters

RGD ID:

6798541

Promoter ID:

HG_KWN:39349

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

Lymphoblastoid

Transcripts:

UC002XHA.1

Position:

Human Assembly	Chr	Position (strand)	Source
Build 36	20	35,582,886 - 35,583,386 (-)	MPROMDB

RGD ID:

6798542

Promoter ID:

HG_KWN:39351

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

CD4+TCell, CD4+TCell_12Hour, CD4+TCell_2Hour, HeLa_S3, Jurkat, K562, Lymphoblastoid, NB4

Transcripts:

ENST00000397135, ENST00000397137, NM_001167820, OTTHUMT00000079113, OTTHUMT00000079114, OTTHUMT00000276652

Position:

Human Assembly	Chr	Position (strand)	Source
Build 36	20	35,589,584 - 35,590,084 (-)	MPROMDB

RGD ID:

6851014

Promoter ID:

EP73304

Type:

initiation region

Name:

HS_BLCAP

Description:

Bladder cancer associated protein.

SO ACC ID:

SO:0000170

Source:

EPD (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

NEDO full length human cDNA sequencing project.; Oligo-capping

Position:

Human Assembly	Chr	Position (strand)	Source
Build 36	20	35,589,689 - 35,589,749	EPD

RGD ID:

13206887

Promoter ID:

EPDNEW_H27024

Type:

initiation region

Name:

BLCAP_2

Description:

bladder cancer associated protein

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_H27025

Experiment Methods:

Single-end sequencing.

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	20	37,524,452 - 37,524,512	EPDNEW

RGD ID:

13206889

Promoter ID:

EPDNEW_H27025

Type:

initiation region

Name:

BLCAP_1

Description:

bladder cancer associated protein

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_H27024

Experiment Methods:

Single-end sequencing.

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	20	37,527,875 - 37,527,935	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	HGNC:1055	AgrOrtholog
COSMIC	BLCAP	COSMIC
Ensembl Genes	ENSG00000166619	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript	ENST00000373537	ENTREZGENE
	ENST00000373537.7	UniProtKB/Swiss-Prot
	ENST00000397131	ENTREZGENE
	ENST00000397131.1	UniProtKB/Swiss-Prot
	ENST00000397134	ENTREZGENE
	ENST00000397134.1	UniProtKB/Swiss-Prot
	ENST00000397135	ENTREZGENE
	ENST00000397135.1	UniProtKB/Swiss-Prot
	ENST00000397137	ENTREZGENE
	ENST00000397137.5	UniProtKB/Swiss-Prot
	ENST00000414080.1	UniProtKB/TrEMBL
	ENST00000414542	ENTREZGENE
	ENST00000414542.6	UniProtKB/Swiss-Prot
	ENST00000432507	ENTREZGENE
	ENST00000432507.1	UniProtKB/Swiss-Prot
	ENST00000445723.5	UniProtKB/TrEMBL
	ENST00000456058.1	UniProtKB/TrEMBL
GTEx	ENSG00000166619	GTEx
HGNC ID	HGNC:1055	ENTREZGENE
Human Proteome Map	BLCAP	Human Proteome Map
InterPro	BC10	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	hsa:10904	UniProtKB/Swiss-Prot
NCBI Gene	10904	ENTREZGENE
OMIM	613110	OMIM
PANTHER	BLADDER CANCER-ASSOCIATED PROTEIN	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PTHR13259	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	BC10	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB	PA25367	PharmGKB
SMART	BC10	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A1Y8ELN7_HUMAN	UniProtKB/TrEMBL
	A2A2K7	ENTREZGENE
	A2A2K8	ENTREZGENE, UniProtKB/TrEMBL
	A2A2K9_HUMAN	UniProtKB/TrEMBL
	BLCAP_HUMAN	UniProtKB/Swiss-Prot
	O60629	ENTREZGENE
	P62952	ENTREZGENE
	Q9D3B5	ENTREZGENE
UniProt Secondary	A2A2K7	UniProtKB/Swiss-Prot
	O60629	UniProtKB/Swiss-Prot
	Q9D3B5	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2019-01-29	BLCAP	BLCAP apoptosis inducing factor		BLCAP, apoptosis inducing factor	Symbol and/or name change	5135510	APPROVED
2018-05-08	BLCAP	BLCAP, apoptosis inducing factor		bladder cancer associated protein	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Human Phenotype Annotations - ClinVar

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Imported Disease Annotations - ClinVar

Imported Human Phenotype Annotations - ClinVar