ACTBP12 (ACTB pseudogene 12) - Rat Genome Database

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Gene: ACTBP12 (ACTB pseudogene 12) Homo sapiens
Analyze
Symbol: ACTBP12
Name: ACTB pseudogene 12
RGD ID: 1347270
HGNC Page HGNC:150
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: ACTGP5; actin, beta pseudogene 12
Related Functional Gene: ACTB  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38192,229,002 - 92,229,435 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl192,229,018 - 92,229,435 (-)EnsemblGRCh38hg38GRCh38
GRCh37192,694,559 - 92,694,992 (-)NCBIGRCh37GRCh37hg19GRCh37
Celera190,940,994 - 90,941,434 (-)NCBICelera
Cytogenetic Map1p22.1NCBI
HuRef190,814,784 - 90,815,224 (-)NCBIHuRef
CHM1_1192,809,336 - 92,809,776 (-)NCBICHM1_1
T2T-CHM13v2.0192,073,913 - 92,074,346 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:1692956  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:258
Count of miRNA genes:226
Interacting mature miRNAs:230
Transcripts:ENST00000435871, ENST00000594933
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 1 2 1 5 1 4 5 2 1
Low 46 12 20 7 115 9 109 34 72 31 110 120 1 4 9
Below cutoff 381 367 246 90 239 72 705 339 692 125 469 360 28 119 432 4

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000435871
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl192,229,018 - 92,229,435 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC ACTBP12 COSMIC
Ensembl Genes ENSG00000233125 Ensembl, ENTREZGENE
GTEx ENSG00000233125 GTEx
HGNC ID HGNC:150 ENTREZGENE
Human Proteome Map ACTBP12 Human Proteome Map
NCBI Gene 100462767 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-01-15 ACTBP12  ACTB pseudogene 12    actin, beta pseudogene 12  Symbol and/or name change 5135510 APPROVED
2011-07-27 ACTBP12  actin, beta pseudogene 12  ACTGP5  actin, gamma pseudogene 5  Symbol and/or name change 5135510 APPROVED