RPS17P5 (ribosomal protein S17 pseudogene 5) - Rat Genome Database

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Gene: RPS17P5 (ribosomal protein S17 pseudogene 5) Homo sapiens
Analyze
Symbol: RPS17P5
Name: ribosomal protein S17 pseudogene 5
RGD ID: 1346959
HGNC Page HGNC:21352
Description: INTERACTS WITH N-acetyl-1,4-benzoquinone imine; vorinostat
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: dJ753D5.2; RPS17_4_700; RPS17L4
Related Functional Gene: RPS17  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38650,857,209 - 50,857,687 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl650,857,255 - 50,857,662 (-)EnsemblGRCh38hg38GRCh38
GRCh37650,824,922 - 50,825,400 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36650,932,873 - 50,933,359 (-)NCBINCBI36Build 36hg18NCBI36
Celera652,380,830 - 52,381,308 (-)NCBICelera
Cytogenetic Map6p12.3NCBI
HuRef650,556,115 - 50,556,593 (-)NCBIHuRef
CHM1_1650,827,771 - 50,828,249 (-)NCBICHM1_1
T2T-CHM13v2.0650,699,961 - 50,700,439 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:3240863   PMID:19123937  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:42
Count of miRNA genes:42
Interacting mature miRNAs:42
Transcripts:ENST00000498293
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High
Medium
Low 34 29 16 4 59 1 81 12 35 5 46 27 4 1 15 51 1 2
Below cutoff 814 805 546 154 332 86 1621 669 899 82 462 498 71 455 1049 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000498293
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl650,857,255 - 50,857,662 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RPS17P5 COSMIC
Ensembl Genes ENSG00000060303 Ensembl, ENTREZGENE
GTEx ENSG00000060303 GTEx
HGNC ID HGNC:21352 ENTREZGENE
Human Proteome Map RPS17P5 Human Proteome Map
NCBI Gene 442216 ENTREZGENE